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Gene: Sox13 (SRY-box transcription factor 13) Rattus norvegicus

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Symbol:

Sox13

Name:

SRY-box transcription factor 13

RGD ID:

1309674

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; positive regulation of cell differentiation; and spinal cord oligodendrocyte cell differentiation. Predicted to act upstream of or within regulation of gamma-delta T cell differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SOX13 (SRY-box transcription factor 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC289026; SRY (sex determining region Y)-box 13; SRY box 13; SRY-box containing gene 13; transcription factor SOX-13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SOX13 (SRY-box transcription factor 13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Sox13 (SRY (sex determining region Y)-box 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sox13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SOX13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SOX13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sox13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SOX13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SOX13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sox13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sox13 (SRY-box transcription factor 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SOX13 (SRY-box transcription factor 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sox13 (SRY (sex determining region Y)-box 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sox13 (SRY (sex determining region Y)-box 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	egl-13	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sox102F	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Sox102F	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	sox13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,383,145 - 47,427,572 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	47,383,145 - 47,435,663 (-)	Ensembl				GRCr8
mRatBN7.2	13	44,831,097 - 44,875,522 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	44,831,085 - 44,875,762 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	47,440,198 - 47,484,766 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,728,297 - 48,772,864 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,987,023 - 46,031,359 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,434,702 - 50,479,118 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	50,434,702 - 50,479,657 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	55,487,460 - 55,531,979 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	46,298,820 - 46,345,155 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	45,163,489 - 45,207,838 (-)	NCBI		Celera
RGSC_v3.1	13	46,314,242 - 46,328,986 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibenzo[a,l]pyrene (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fipronil (EXP)

flusilazole (ISO)

FR900359 (ISO)

gentamycin (EXP)

hexaconazole (ISO)

indometacin (ISO)

L-ascorbic acid (ISO)

lead(0) (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorononanoic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triadimefon (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

urethane (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cell fate commitment (IBA)

DNA-templated transcription (IEA)

gamma-delta T cell differentiation (IEA,ISO)

negative regulation of canonical Wnt signaling pathway (IEA,ISO)

negative regulation of DNA-templated transcription (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of brown fat cell differentiation (IEA,ISO)

positive regulation of gamma-delta T cell differentiation (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of gamma-delta T cell differentiation (ISO)

regulation of transcription by RNA polymerase II (IBA)

spinal cord oligodendrocyte cell differentiation (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IEA)

DNA binding (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity (IEA,ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA,ISO)

identical protein binding (IEA,ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

sequence-specific DNA binding (IEA,ISO)

transcription cis-regulatory region binding (IEA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

albuminuria (IAGP)

salt-sensitive hypertension (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Congenic mapping and sequence analysis of the Renin locus.	Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9421502	PMID:9524265	PMID:10871192	PMID:16835393	PMID:17218525	PMID:21737317	PMID:23562159	PMID:26525805	PMID:27923061

Genomics

Comparative Map Data

Sox13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,383,145 - 47,427,572 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	47,383,145 - 47,435,663 (-)	Ensembl				GRCr8
mRatBN7.2	13	44,831,097 - 44,875,522 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	44,831,085 - 44,875,762 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	47,440,198 - 47,484,766 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,728,297 - 48,772,864 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,987,023 - 46,031,359 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,434,702 - 50,479,118 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	50,434,702 - 50,479,657 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	55,487,460 - 55,531,979 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	46,298,820 - 46,345,155 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	45,163,489 - 45,207,838 (-)	NCBI		Celera
RGSC_v3.1	13	46,314,242 - 46,328,986 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

SOX13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	204,073,115 - 204,127,743 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	204,073,111 - 204,127,743 (+)	Ensembl			hg38	GRCh38
GRCh37	1	204,042,243 - 204,096,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	202,308,869 - 202,363,494 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	200,773,902 - 200,828,526	NCBI
Celera	1	177,177,489 - 177,232,113 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	175,207,788 - 175,262,190 (+)	NCBI		HuRef
CHM1_1	1	205,465,911 - 205,520,530 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	203,337,265 - 203,391,900 (+)	NCBI		T2T-CHM13v2.0

Sox13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	133,310,038 - 133,352,159 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	133,310,041 - 133,352,115 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	133,382,300 - 133,424,459 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	133,382,303 - 133,424,377 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	135,278,877 - 135,320,789 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	135,209,849 - 135,220,764 (-)	NCBI		MGSCv36	mm8
Celera	1	135,994,724 - 136,036,968 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.91	NCBI

Sox13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,966,055 - 39,994,214 (+)	Ensembl
ChiLan1.0	NW_004955406	39,959,458 - 39,994,214 (+)	NCBI	ChiLan1.0	ChiLan1.0

SOX13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	45,248,731 - 45,303,911 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	45,214,012 - 45,269,597 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	179,675,017 - 179,730,628 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	183,963,390 - 184,018,111 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	184,003,907 - 184,016,504 (+)	Ensembl			panPan2	panpan1.1

SOX13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	702,974 - 721,340 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	523,481 - 720,195 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	798,529 - 815,690 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	705,300 - 716,303 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	519,330 - 717,371 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	701,321 - 712,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	1,092,743 - 1,103,513 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	1,286,221 - 1,304,778 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sox13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,396,509 - 71,441,482 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	630,855 - 642,017 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	631,126 - 641,967 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOX13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	64,731,969 - 64,780,942 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	64,745,762 - 64,780,942 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	71,086,586 - 71,142,049 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SOX13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	25,220,341 - 25,275,981 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	25,221,945 - 25,235,449 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	25,980,881 - 26,036,324 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sox13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	6,848,218 - 6,888,467 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	6,848,218 - 6,887,666 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sox13
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	2,416,975 - 2,460,906 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sox13
405 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	543
Count of miRNA genes:	247
Interacting mature miRNAs:	295
Transcripts:	ENSRNOT00000032244
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	46272922	51216694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

BE108977

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	44,849,741 - 44,849,897 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	50,460,322 - 50,460,477	NCBI	Rnor6.0
Rnor_5.0	13	55,513,181 - 55,513,336	UniSTS	Rnor5.0
RGSC_v3.4	13	46,319,379 - 46,319,534	UniSTS	RGSC3.4
Celera	13	45,182,066 - 45,182,221	UniSTS
RH 3.4 Map	13	181.0	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	91	59	6	355	191	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032244 ⟹ ENSRNOP00000030216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	47,383,145 - 47,426,820 (-)	Ensembl
mRatBN7.2 Ensembl	13	44,831,097 - 44,875,762 (-)	Ensembl
Rnor_6.0 Ensembl	13	50,434,702 - 50,479,118 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076857 ⟹ ENSRNOP00000068223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	47,383,145 - 47,435,663 (-)	Ensembl
mRatBN7.2 Ensembl	13	44,831,085 - 44,875,286 (-)	Ensembl
Rnor_6.0 Ensembl	13	50,434,886 - 50,479,657 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142596 ⟹ ENSRNOP00000108249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	47,384,364 - 47,427,427 (-)	Ensembl

RefSeq Acc Id:

NM_001105952 ⟹ NP_001099422

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,145 - 47,427,572 (-)	NCBI
mRatBN7.2	13	44,831,097 - 44,875,522 (-)	NCBI
Rnor_6.0	13	50,434,702 - 50,479,118 (+)	NCBI
Rnor_5.0	13	55,487,460 - 55,531,979 (+)	NCBI
RGSC_v3.4	13	46,298,820 - 46,345,155 (-)	RGD
Celera	13	45,163,489 - 45,207,838 (-)	RGD

Sequence:

show sequence

CGGCCGGGAGTCCGGGAGCCGGACTGCGGAAGGGAGCACGGCTGCGGCCAGCCGAGGGCAGAGG
GCAGAGTGCCGAGCGGCCTGGCTCGGCGGAGGGCGCCGCCCGACCCGTCCTCAGCTCGGCGCCC
GCGACGGTGGCCAGCGGAGCCTGGCGGGCCGCGGATCCTGAGCGCTTCCAGCCCACGGTGGGGG
GCGTGCCTCCGCCCGGCCGCGCCGCCCCGGCCCGCTGCCCGCCGCGTTGCCTGGGCATGTGAGC
GGGAAGGCCAGGCTGCTGGCCGCCGGGACGCACTGAACAGGAGCCGGAGCACGGAGTTGCGACC
CCGGGCCAGCGCCCGACCGATTAGATGTCCGTGCAGAGCCCCGTCTCTGTGCAGCTGGCCCCAG
ACAGCGCTAGCACCATGGTGAACTGCACCGTCAAGTCTGAGGAGAAGAAGGAGCCTTGCCACGA
AGCTCCCCAAGGCACAGCCACTGCAGTGGAGCCCCAGCCTGGAGACCCAGCCCTGGCCTCTCAG
GATGCCACCAACTCCAAAGCCCCTGCTCAGGACTGTGCCTCACCACAGAGCAGTGGGTCCCCAG
ACCCCAAGAGACCAGCAGCTTCCGAGGCTGCTTCGGGAAGCCAGGAGCGGCTGGACTTCAACCG
CAACTTACAGGAAGTTGTTCCAGCCATTGAGAAGCTGCTGTCCAGTGACTGGAAGGAGAGGTTT
CTGGGAAGAAGCTCTGTGGAAGCTAAGGATGTCAAAGGGACCCAAGAGAGCCTGGCTGAGAAGG
AGCTCCAGCTTCTGGTCATGATCCATCAGCTCTCCGCCCTTCGGGACCAGCTCCTTACGGCCCA
CTCTGAGCAGAAGAACATGGCTGCCATGCTGTTTGAGAAACAGCAGCAGCAGATGGAACTGGCC
AGGCAGCAGCAGGAGCAGATCGCCAAGCAACAGCAGCAGCTGATTCAGCAGCAGCACAAGATCA
ACCTCCTCCAGCAGCAGATCCAGGTTAACATGCCTTATGTCATGATCCCGGCCTTTCCCTCAAG
TCACCAGCCTTTGCCTGTCACTCCTGACTCCCAGCTGGCTTTGCCCATTCAGCCCATTCCCTGC
AAGCCAGTGGAGTACCCACTGCAGCTGCTGCACAGCCCGCCTGCCCCCGTGGTGAAGAGGCCTG
GGGTGGCCACCCACCACCCCCTGCAGGAGCCCCCACAACCACTGAACCTCACAGCCAAGCCCAA
GGTCTCTGAGCTACCCAACACCTCCAGCTCTCCCAGCCTGAAGATGAACAGTTGTGGGCCTCGC
CCCTCCAGCCATGGGGCTCCCACAAGGGATCTGCAGTCCAGCCCCCCGAACCTGCCTCTGGGCT
TCCTTGGGGAAGGGGACGCTGTCACCAAAGCCATCCAGGATGCTCGGCAACTGCTACACAGCCA
CAGTGGGGCCTTGGAAAACTCCCCCAGTGCCCCATTCCGAAAGGACCTCATCAGCCTGGACTCC
TCCCCAGCCAAGGAGCGGCTGGAGGAGAACTGTGTGCATCCCCTGGAGGAAGCCATGCTGGGCT
GTGACGTGGATGGCTCTCGCCATTTCTCCGAGTCTCGGAACAGCAGCCACATCAAGAGACCCAT
GAATGCCTTCATGGTGTGGGCCAAGGATGAGCGGAGGAAAATTCTTCAAGCCTTCCCAGATATG
CATAACTCCAGCATCAGCAAGATCCTTGGTTCTCGCTGGAAGTCCATGACCAACCAGGAGAAGC
AGCCGTACTACGAGGAGCAGGCCCGTCTGAGCCGACAGCACCTGGAGAAATATCCCGACTACAA
GTACAAGCCAAGGCCTAAACGCACCTGTGTCGTGGAGGGCCGGCGGCTGCGAGTGGGCGAGTAC
AAAGCCCTGATGAGGACACGGCGCCAGGGTGCTCGCCAAAGCTACGCCATCCCCCCGCAGGCTG
GCCAGGCACAGGTGAGCTCAGATATCCTGTTCCCTCGGGCAGCAGGCATGCCCTTGGCACGTCC
ACTGGTGGAGCACTATGACCCCCAGGGCCTGGACCCCAACATGCCTGTCATCATCAATACCTGC
AGTCTCCGGGAGGAAGGGGAGGGCACAGATGACAGGCACTCGGTGGCCGATGGAGAGATGTACC
GGTACAGCGAGGATGAGGACTCAGAGGGTGACGAGAAGAGTGAGGAGGAGCTGGTGGTACTCAC
AGACTGATCCTCAGCTAGCTGGGCCTGGCCCGTCACCGCTGGGGGAAGAGAACTTGTTCCCAAC
CCGACAGGCACAGCCAGCCTTCCTGAACTATGTTGGTACTTGGACTTTGGGCGTGCCCAGGTAA
TGGGTGAAACCGCGTTTGTAGATACATTCCCCAGGCGGGGCTCCTCCTCTTCATCACACCTCCA
GGCACATCTGAGGAGCCAACGGCCTGGCTGGGTGGGATTCACGTGGCTGTGGTGAACCAAGCTG
GCTGAGGGTTTTAGCCCTTGGGGCGAATGGCCTGGGACCACTGGGTGTATACCCTCCTGTATGT
CCACCCACTCGAGGGGATGGCAGGGATATACCTGTCCCCTTAAGGTCACATGCTTTGTTTCCAT
TTTGTCTCGGCCCAAACCAGCCATGGTGGGACAATATGTCTGCCCTAGAAGCTCCCAGGTCACC
CCTGTGTCACCTGGGTTACTCTGTACTCTGTGCAGTCTGGCTGTCCCGTCTTTGTCTTCCAAGT
CCACGTGCCTCTGGCTGCTGTGTGTCTGTGCGCAGCTCACGTTGTCATCCCTCCACTCTTGGCG
GAAGGTATTTGCTGGGTGGTCACTGTGAGCCAGGCGTGCTGGTGAGATCCGTGATGTGTGTCTT
AATGCTTCTCTGGGGGCTTCTTCTGTGTTCCTTTGTCCCCAAAATGCTACCTCTTTGTCAGTCT
GGTGTCTCAGGTTCTGTGTATTTTCTTTCCATGTGCATTTTCTCTCTTCCTCTGTCTGTCCCTG
CTCCCTCCCACCACACCTGCTGTATCTTCTGGGTGTTTGTAGGGCCCAGCCTGCCCCTGGGACT
GGCAGTTTCCTGACCCCATGACCCCTTTCCTCCCTTCTGACTTTGCCAGTCAGTTCCCATGGAG
CCATTTTTAGCTCCTGGGACCGTGAGAGCGTGCCTAGGCCTCCAAGGGGCTCTGCCCCAATTCC
CAACCTGTGTCCCCAGGCATGGGGGTCTTTTGTCAGTGACAGCCCTGCAGAGGGGACTCCATGG
CAGCTGGTCTCCATCCCTTCTTCATGAGCTTAGGGTGGGTTCTTCCCTCCCCCACCTCGTCCTG
GGGAATGGGCTCCACTCGTTATAAATAAGCTTTCTGGTTGTGTACCAAGAAAATCAAAGACCAT
CAGCACCCAGCTTCAAAGATCTGGAGCTGCCCTGGGTCAGGGAAATGATCCCAAACCCCACATG
GCCGGGCGCCTCCCTCCCCACCTCTGTTGACCCCATTTCTCTCCAGACTGTTTCTTTTTATGAC
TGTAAACATAGATAGTGCTTTATTTTGTTACTAAGAAGATAATGATGAATAACTTAACCAGCAT
ATTTGTTTTCTGATGGTGTAATAAAGACCGACCATTTCAGAAC

hide sequence

RefSeq Acc Id:

XM_006249762 ⟹ XP_006249824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,146 - 47,427,370 (-)	NCBI
mRatBN7.2	13	44,831,098 - 44,875,310 (-)	NCBI
Rnor_6.0	13	50,434,965 - 50,479,114 (+)	NCBI
Rnor_5.0	13	55,487,460 - 55,531,979 (+)	NCBI

Sequence:

show sequence

CCAGGCTGCTGGCCGCCGGGACGCACTGAACAGGAGCCGGAGCACGGAGTTGCGACCCCGGGCC
AGCGCCCGACCGATTAGATGTCCGTGCAGAGCCCCGTCTCTGTGCAGCTGGCCCCAGACAGCGC
TAGCACCATGGTGAACTGCACCGTCAAGTCTGAGGAGAAGAAGGAGCCTTGCCACGAAGCTCCC
CAAGGCACAGCCACTGCAGTGGAGCCCCAGCCTGGAGACCCAGCCCTGGCCTCTCAGGATGCCA
CCAACTCCAAAGCCCCTGCTCAGGACTGTGCCTCACCACAGAGCAGTGGGTCCCCAGACCCCAA
GAGACCAGCAGCTTCCGAGGCTGCTTCGGGAAGCCAGGAGCGGCTGGACTTCAACCGCAACTTA
CAGGAAGTTGTTCCAGCCATTGAGAAGCTGCTGTCCAGTGACTGGAAGGAGAGGTTTCTGGGAA
GAAGCTCTGTGGAAGCTAAGGATGTCAAAGGGACCCAAGAGAGCCTGGCTGAGAAGGAGCTCCA
GCTTCTGGTCATGATCCATCAGCTCTCCGCCCTTCGGGACCAGCTCCTTACGGCCCACTCTGAG
CAGAAGAACATGGCTGCCATGCTGTTTGAGAAACAGCAGCAGCAGATGGAACTGGCCAGGCAGC
AGCAGGAGCAGATCGCCAAGCAACAGCAGCAGCTGATTCAGCAGCAGCACAAGATCAACCTCCT
CCAGCAGCAGATCCAGCAGGTTAACATGCCTTATGTCATGATCCCGGCCTTTCCCTCAAGTCAC
CAGCCTTTGCCTGTCACTCCTGACTCCCAGCTGGCTTTGCCCATTCAGCCCATTCCCTGCAAGC
CAGTGGAGTACCCACTGCAGCTGCTGCACAGCCCGCCTGCCCCCGTGGTGAAGAGGCCTGGGGT
GGCCACCCACCACCCCCTGCAGGAGCCCCCACAACCACTGAACCTCACAGCCAAGCCCAAGGTC
TCTGAGCTACCCAACACCTCCAGCTCTCCCAGCCTGAAGATGAACAGTTGTGGGCCTCGCCCCT
CCAGCCATGGGGCTCCCACAAGGGATCTGCAGTCCAGCCCCCCGAACCTGCCTCTGGGCTTCCT
TGGGGAAGGGGACGCTGTCACCAAAGCCATCCAGGATGCTCGGCAACTGCTACACAGCCACAGT
GGGGCCTTGGAAAACTCCCCCAGTGCCCCATTCCGAAAGGACCTCATCAGCCTGGACTCCTCCC
CAGCCAAGGAGCGGCTGGAGGAGAACTGTGTGCATCCCCTGGAGGAAGCCATGCTGGGCTGTGA
CGTGGATGGCTCTCGCCATTTCTCCGAGTCTCGGAACAGCAGCCACATCAAGAGACCCATGAAT
GCCTTCATGGTGTGGGCCAAGGATGAGCGGAGGAAAATTCTTCAAGCCTTCCCAGATATGCATA
ACTCCAGCATCAGCAAGATCCTTGGTTCTCGCTGGAAGTCCATGACCAACCAGGAGAAGCAGCC
GTACTACGAGGAGCAGGCCCGTCTGAGCCGACAGCACCTGGAGAAATATCCCGACTACAAGTAC
AAGCCAAGGCCTAAACGCACCTGTGTCGTGGAGGGCCGGCGGCTGCGAGTGGGCGAGTACAAAG
CCCTGATGAGGACACGGCGCCAGGGTGCTCGCCAAAGCTACGCCATCCCCCCGCAGGCTGGCCA
GGCACAGGTGAGCTCAGATATCCTGTTCCCTCGGGCAGCAGGCATGCCCTTGGCACGTCCACTG
GTGGAGCACTATGACCCCCAGGGCCTGGACCCCAACATGCCTGTCATCATCAATACCTGCAGTC
TCCGGGAGGAAGGGGAGGGCACAGATGACAGGCACTCGGTGGCCGATGGAGAGATGTACCGGTA
CAGCGAGGATGAGGACTCAGAGGGTGACGAGAAGAGTGAGGAGGAGCTGGTGGTACTCACAGAC
TGATCCTCAGCTAGCTGGGCCTGGCCCGTCACCGCTGGGGGAAGAGAACTTGTTCCCAACCCGA
CAGGCACAGCCAGCCTTCCTGAACTATGTTGGTACTTGGACTTTGGGCGTGCCCAGGTAATGGG
TGAAACCGCGTTTGTAGATACATTCCCCAGGCGGGGCTCCTCCTCTTCATCACACCTCCAGGCA
CATCTGAGGAGCCAACGGCCTGGCTGGGTGGGATTCACGTGGCTGTGGTGAACCAAGCTGGCTG
AGGGTTTTAGCCCTTGGGGCGAATGGCCTGGGACCACTGGGTGTATACCCTCCTGTATGTCCAC
CCACTCGAGGGGATGGCAGGGATATACCTGTCCCCTTAAGGTCACATGCTTTGTTTCCATTTTG
TCTCGGCCCAAACCAGCCATGGTGGGACAATATGTCTGCCCTAGAAGCTCCCAGGTCACCCCTG
TGTCACCTGGGTTACTCTGTACTCTGTGCAGTCTGGCTGTCCCGTCTTTGTCTTCCAAGTCCAC
GTGCCTCTGGCTGCTGTGTGTCTGTGCGCAGCTCACGTTGTCATCCCTCCACTCTTGGCGGAAG
GTATTTGCTGGGTGGTCACTGTGAGCCAGGCGTGCTGGTGAGATCCGTGATGTGTGTCTTAATG
CTTCTCTGGGGGCTTCTTCTGTGTTCCTTTGTCCCCAAAATGCTACCTCTTTGTCAGTCTGGTG
TCTCAGGTTCTGTGTATTTTCTTTCCATGTGCATTTTCTCTCTTCCTCTGTCTGTCCCTGCTCC
CTCCCACCACACCTGCTGTATCTTCTGGGTGTTTGTAGGGCCCAGCCTGCCCCTGGGACTGGCA
GTTTCCTGACCCCATGACCCCTTTCCTCCCTTCTGACTTTGCCAGTCAGTTCCCATGGAGCCAT
TTTTAGCTCCTGGGACCGTGAGAGCGTGCCTAGGCCTCCAAGGGGCTCTGCCCCAATTCCCAAC
CTGTGTCCCCAGGCATGGGGGTCTTTTGTCAGTGACAGCCCTGCAGAGGGGACTCCATGGCAGC
TGGTCTCCATCCCTTCTTCATGAGCTTAGGGTGGGTTCTTCCCTCCCCCACCTCGTCCTGGGGA
ATGGGCTCCACTCGTTATAAATAAGCTTTCTGGTTGTGTACCAAGAAAATCAAAGACCATCAGC
ACCCAGCTTCAAAGATCTGGAGCTGCCCTGGGTCAGGGAAATGATCCCAAACCCCACATGGCCG
GGCGCCTCCCTCCCCACCTCTGTTGACCCCATTTCTCTCCAGACTGTTTCTTTTTATGACTGTA
AACATAGATAGTGCTTTATTTTGTTACTAAGAAGATAATGATGAATAACTTAACCAGCATATTT
GTTTTCTGATGGTGTAATAAAGACCGACCATTTCA

hide sequence

RefSeq Acc Id:

XM_039090434 ⟹ XP_038946362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,146 - 47,426,996 (-)	NCBI
mRatBN7.2	13	44,831,098 - 44,874,677 (-)	NCBI

RefSeq Acc Id:

XM_063272077 ⟹ XP_063128147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,146 - 47,415,744 (-)	NCBI

RefSeq Acc Id:

XM_063272078 ⟹ XP_063128148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,146 - 47,415,744 (-)	NCBI

RefSeq Acc Id:

XM_063272079 ⟹ XP_063128149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,383,146 - 47,426,977 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099422	(Get FASTA)	NCBI Sequence Viewer
	XP_006249824	(Get FASTA)	NCBI Sequence Viewer
	XP_038946362	(Get FASTA)	NCBI Sequence Viewer
	XP_063128147	(Get FASTA)	NCBI Sequence Viewer
	XP_063128148	(Get FASTA)	NCBI Sequence Viewer
	XP_063128149	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09767	(Get FASTA)	NCBI Sequence Viewer
	EDM09768	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030216
	ENSRNOP00000030216.6
	ENSRNOP00000068223
	ENSRNOP00000068223.3
	ENSRNOP00000108249.1

RefSeq Acc Id:

NP_001099422 ⟸ NM_001105952

- UniProtKB:

A6IC79 (UniProtKB/TrEMBL), A6IC80 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVQSPVSVQLAPDSASTMVNCTVKSEEKKEPCHEAPQGTATAVEPQPGDPALASQDATNSKAP
AQDCASPQSSGSPDPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVEA
KDVKGTQESLAEKELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIA
KQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFPSSHQPLPVTPDSQLALPIQPIPCKPVEYPLQ
LLHSPPAPVVKRPGVATHHPLQEPPQPLNLTAKPKVSELPNTSSSPSLKMNSCGPRPSSHGAPT
RDLQSSPPNLPLGFLGEGDAVTKAIQDARQLLHSHSGALENSPSAPFRKDLISLDSSPAKERLE
ENCVHPLEEAMLGCDVDGSRHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKI
LGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVGEYKALMRTRR
QGARQSYAIPPQAGQAQVSSDILFPRAAGMPLARPLVEHYDPQGLDPNMPVIINTCSLREEGEG
TDDRHSVADGEMYRYSEDEDSEGDEKSEEELVVLTD

hide sequence

RefSeq Acc Id:	XP_006249824 ⟸ XM_006249762
- Peptide Label:	isoform X3
- UniProtKB:	D4A8S0 (UniProtKB/TrEMBL), A6IC80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVQSPVSVQLAPDSASTMVNCTVKSEEKKEPCHEAPQGTATAVEPQPGDPALASQDATNSKAP AQDCASPQSSGSPDPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVEA KDVKGTQESLAEKELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIA KQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFPSSHQPLPVTPDSQLALPIQPIPCKPVEYPL QLLHSPPAPVVKRPGVATHHPLQEPPQPLNLTAKPKVSELPNTSSSPSLKMNSCGPRPSSHGAP TRDLQSSPPNLPLGFLGEGDAVTKAIQDARQLLHSHSGALENSPSAPFRKDLISLDSSPAKERL EENCVHPLEEAMLGCDVDGSRHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISK ILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVGEYKALMRTR RQGARQSYAIPPQAGQAQVSSDILFPRAAGMPLARPLVEHYDPQGLDPNMPVIINTCSLREEGE GTDDRHSVADGEMYRYSEDEDSEGDEKSEEELVVLTD hide sequence

Ensembl Acc Id:

ENSRNOP00000030216 ⟸ ENSRNOT00000032244

Ensembl Acc Id:

ENSRNOP00000068223 ⟸ ENSRNOT00000076857

RefSeq Acc Id:	XP_038946362 ⟸ XM_039090434
- Peptide Label:	isoform X3
- UniProtKB:	D4A8S0 (UniProtKB/TrEMBL), A6IC80 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128149 ⟸ XM_063272079
- Peptide Label:	isoform X4
- UniProtKB:	A6IC79 (UniProtKB/TrEMBL), A6IC80 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128148 ⟸ XM_063272078
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063128147 ⟸ XM_063272077
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000108249 ⟸ ENSRNOT00000142596

Protein Domains

HMG box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A8S0-F1-model_v2	AlphaFold	D4A8S0	1-612	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698827

Promoter ID:

EPDNEW_R9347

Type:

single initiation site

Name:

Sox13_1

Description:

SRY box 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	50,434,894 - 50,434,954	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309674	AgrOrtholog
BioCyc Gene	G2FUF-18284	BioCyc
Ensembl Genes	ENSRNOG00000028353	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032244	ENTREZGENE
	ENSRNOT00000032244.9	UniProtKB/TrEMBL
	ENSRNOT00000076857	ENTREZGENE
	ENSRNOT00000076857.3	UniProtKB/TrEMBL
	ENSRNOT00000142596.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	HMG_box_dom_sf	UniProtKB/TrEMBL
	HMG_superfamily	UniProtKB/TrEMBL
	SOX/SOX-like_TF	UniProtKB/TrEMBL
KEGG Report	rno:289026	UniProtKB/TrEMBL
NCBI Gene	289026	ENTREZGENE
PANTHER	FI18025P1	UniProtKB/TrEMBL
	PTHR45789:SF4	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
PhenoGen	Sox13	PhenoGen
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000028353	RatGTEx
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	HMG-box	UniProtKB/TrEMBL
UniProt	A0A096MJQ6_RAT	UniProtKB/TrEMBL
	A0ABK0LQR0_RAT	UniProtKB/TrEMBL
	A6IC79	ENTREZGENE, UniProtKB/TrEMBL
	A6IC80	ENTREZGENE, UniProtKB/TrEMBL
	D4A8S0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Sox13	SRY-box transcription factor 13	Sox13	SRY box 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-12	Sox13	SRY box 13	Sox13	SRY (sex determining region Y)-box 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Sox13	SRY (sex determining region Y)-box 13	Sox13	SRY-box containing gene 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Sox13	SRY-box containing gene 13	Sox13_predicted	SRY (sex determining region Y)-box 13 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Sox13_predicted	SRY (sex determining region Y)-box 13 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype