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Gene: Ypel5 (yippee-like 5) Rattus norvegicus

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Symbol:

Ypel5

Name:

yippee-like 5

RGD ID:

1309657

Description:

Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC102553396; LOC298792; uncharacterized LOC102553396; yippee-like 5 (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YPEL5 (yippee like 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ypel5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ypel5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YPEL5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YPEL5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ypel5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YPEL5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YPEL5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ypel5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ypel5 (yippee like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	YPEL5 (yippee like 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	YPEL5 (yippee like 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Ypel5 (yippee like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ypel5 (yippee like 5)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	ypel5 (yippee-like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MOH1	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	B0546.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	B0546.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ypel5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ype	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	28,408,079 - 28,423,536 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	28,408,080 - 28,412,385 (-)	Ensembl				GRCr8
mRatBN7.2	6	22,656,284 - 22,671,741 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	22,656,285 - 22,671,691 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	22,987,739 - 23,003,146 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	23,303,574 - 23,318,981 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	22,786,551 - 22,801,960 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	24,069,351 - 24,084,758 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	24,064,738 - 24,084,757 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	33,919,768 - 33,935,181 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	22,758,416 - 22,773,823 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	22,192,616 - 22,208,062 (-)	NCBI		Celera
RGSC_v3.1	6	22,761,365 - 22,770,801 (-)	NCBI
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bortezomib (ISO)

buspirone (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

chloropicrin (ISO)

chrysene (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diethyl maleate (ISO)

dimethyl sulfoxide (ISO)

endosulfan (EXP)

Enterolactone (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ketamine (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

N(4)-hydroxycytidine (ISO)

nefazodone (EXP)

niclosamide (ISO)

nimesulide (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phorone (EXP)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thioacetamide (EXP)

thiram (ISO)

triphenyl phosphate (ISO)

trovafloxacin (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

ubiquitin ligase complex (IBA,IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:29911972

Genomics

Comparative Map Data

Ypel5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	28,408,079 - 28,423,536 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	28,408,080 - 28,412,385 (-)	Ensembl				GRCr8
mRatBN7.2	6	22,656,284 - 22,671,741 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	22,656,285 - 22,671,691 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	22,987,739 - 23,003,146 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	23,303,574 - 23,318,981 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	22,786,551 - 22,801,960 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	24,069,351 - 24,084,758 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	24,064,738 - 24,084,757 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	33,919,768 - 33,935,181 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	22,758,416 - 22,773,823 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	22,192,616 - 22,208,062 (-)	NCBI		Celera
RGSC_v3.1	6	22,761,365 - 22,770,801 (-)	NCBI
Cytogenetic Map	6	q14	NCBI

YPEL5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	30,147,007 - 30,160,533 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	30,146,771 - 30,160,538 (+)	Ensembl			hg38	GRCh38
GRCh37	2	30,369,873 - 30,383,399 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	30,223,332 - 30,236,903 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	30,281,478 - 30,295,050	NCBI
Celera	2	30,212,614 - 30,226,263 (+)	NCBI		Celera
Cytogenetic Map	2	p23.1	NCBI
HuRef	2	30,108,290 - 30,121,799 (+)	NCBI		HuRef
CHM1_1	2	30,299,990 - 30,313,638 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	30,191,259 - 30,204,786 (+)	NCBI		T2T-CHM13v2.0

Ypel5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	73,143,623 - 73,157,439 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	73,143,448 - 73,158,190 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	72,836,628 - 72,850,444 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	72,836,453 - 72,851,195 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	73,186,044 - 73,200,535 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	72,741,704 - 72,756,195 (+)	NCBI		MGSCv36	mm8
Celera	17	77,119,613 - 77,134,035 (+)	NCBI		Celera
Cytogenetic Map	17	E1.3	NCBI
cM Map	17	44.7	NCBI

Ypel5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	11,956,047 - 11,967,360 (+)	Ensembl
ChiLan1.0	NW_004955469	11,955,257 - 11,967,360 (+)	NCBI	ChiLan1.0	ChiLan1.0

YPEL5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	96,340,670 - 96,357,111 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	96,344,644 - 96,358,442 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	30,159,573 - 30,173,181 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	30,235,158 - 30,248,880 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	30,235,616 - 30,248,880 (+)	Ensembl			panPan2	panpan1.1

YPEL5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	23,864,190 - 23,878,510 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	23,655,822 - 23,671,299 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	24,424,349 - 24,439,838 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	24,424,395 - 24,439,837 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	23,730,096 - 23,745,578 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	23,793,160 - 23,808,595 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	23,892,572 - 23,908,036 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ypel5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	67,993,978 - 68,007,460 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	2,832,107 - 2,844,438 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	2,832,105 - 2,845,551 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YPEL5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	109,178,095 - 109,195,586 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	109,178,093 - 109,196,643 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	115,863,173 - 115,881,849 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YPEL5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	77,387,604 - 77,400,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	77,389,254 - 77,400,955 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	34,692,466 - 34,705,773 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ypel5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	12,009,537 - 12,027,480 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624738	12,009,464 - 12,025,001 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ypel5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	20,377,671 - 20,392,702 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ypel5
25 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	196
Count of miRNA genes:	134
Interacting mature miRNAs:	164
Transcripts:	ENSRNOT00000035362
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
8693645	Alc31	Alcohol consumption QTL 31	3.7	0.038	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	23284664	29732046	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	22653889	67653889	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	22288257	32981219	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	22288257	67288257	Rat

Markers in Region

D6Rat77

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	28,416,140 - 28,416,292 (+)	Marker Load Pipeline
mRatBN7.2	6	22,664,345 - 22,664,497 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	24,076,545 - 24,076,696	NCBI	Rnor6.0
Rnor_5.0	6	33,926,962 - 33,927,113	UniSTS	Rnor5.0
RGSC_v3.4	6	22,766,477 - 22,766,629	RGD	RGSC3.4
RGSC_v3.4	6	22,766,478 - 22,766,629	UniSTS	RGSC3.4
Celera	6	22,200,678 - 22,200,829	UniSTS
RGSC_v3.1	6	22,769,430 - 22,769,582	RGD
FHH x ACI Map	6	20.5099	UniSTS
FHH x ACI Map	6	20.5099	RGD
Cytogenetic Map	6	q13	UniSTS

RH127344

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	22,656,366 - 22,656,580 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	24,084,462 - 24,084,675	NCBI	Rnor6.0
Rnor_5.0	6	33,934,879 - 33,935,092	UniSTS	Rnor5.0
RGSC_v3.4	6	22,758,499 - 22,758,712	UniSTS	RGSC3.4
Celera	6	22,192,699 - 22,192,912	UniSTS
Cytogenetic Map	6	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001035221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB584328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035362 ⟹ ENSRNOP00000038910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	28,408,080 - 28,412,385 (-)	Ensembl
mRatBN7.2 Ensembl	6	22,656,285 - 22,671,691 (-)	Ensembl
Rnor_6.0 Ensembl	6	24,064,738 - 24,084,757 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101401 ⟹ ENSRNOP00000092955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	22,657,218 - 22,670,825 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103854 ⟹ ENSRNOP00000083729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	22,657,218 - 22,670,834 (-)	Ensembl

RefSeq Acc Id:

NM_001035221 ⟹ NP_001030298

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,486 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,691 (-)	NCBI
Rnor_6.0	6	24,069,351 - 24,084,758 (+)	NCBI
Rnor_5.0	6	33,919,768 - 33,935,181 (+)	NCBI
RGSC_v3.4	6	22,758,416 - 22,773,823 (-)	RGD
Celera	6	22,192,616 - 22,208,062 (-)	RGD

Sequence:

show sequence

CTAAACCTGAAGACTTGGAGGCCGAGGGGGGCTTCGACCCAGCTGAGGAGCGAAGAGCTGCTGG
CAGCGCCGATCCCCAGTGCGCAGGTTTTTAGAACTTCAGCTATCAAAATGGGCAGAATCTTTCT
TGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACAATCCTGACCAATCGC
TCAGAACTCATCTCTACTCGGTTCACAGGCGCCACTGGTAGAGCATTTCTTTTTAACAAGGTAG
TTAACTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACATGGTTCGAGA
TGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCTACTGAAGACAGC
CAGCGTTATAAGGAAGGCCGTGTGATCCTGGAACGTGCACTAGTTCGAGAGAGTGAAGGCTTTG
AGGAGCATGTACCATCTGATAACTCTTGAAGAAAAAAGATAAACCCATCTTTTCCCAGGTCTCC
TTCACTGAAAACAAAAATCTCCTTACATACACTGTCACCTTAGCATCAGAGTCGGATTCATGAA
CTGCGGAACAAGAGGTTGTGAGCATCTAAGATGGAAACTTTCTTCTTTCTTCTTTTGTTTTGTT
TTTTTTAATTTTGTATTTTCCATCCAACAGCAGTTTGTAGAGAGAATTTTATGCATATGCCATT
AATTTTTTCCCTGTGTTTACATCTTGAGGCAGATTTGCAACTACATGGTGGGCTATGTAAGGGA
AAAAATTGGGGTCCTTAGAGTGAAAAGGAGTGTTTTGTGTACATTTTGAGTGGAGAATATGTCA
AGAGCATGGTTTTTAAATTTATTTGGGCTTCATTTAAAATTTTCTTTTTAACCCAGTTATTTCA
CTTAATTTGCTAGCTTCAAGAAGAGATCCGAATCTGTGCCCAGCGCTGGAGGCTCAGTGTTAGC
GTGGCTTGTGCTGGCCAGTGTGCCATATTCTTGTTGGAGAGGAACTGTAGCACCAGAACCCATT
CTTCCTTGTCAGTCTTGACCCACAGATGTCACCATCCCTAGTTCCTTGTCACCACGTACTTGGT
GTTGATTGGAAACTTTCTGAAATGGGGCAGAACTGCTTGGTTGTCTTTTCCCATGTAACTTAAG
CATAGTAATATAAATAAAGTGGTAGTTGGATGTTTTGGTCCTGTGTTACTTTTAAAAATACCTA
ATAAGAGAGCAAACGTTTGATAAGTGATTTTCTTAGTAGTTAAAGTGATTCTTCTCAGTCTTAG
GCTGTCCTGACTATGTATAAGGTTTTTGTGTAGGTGAAAACACACTGTTTAAACAGTGTTGTGT
TTGGAAAACAGTTGAGCAAAATGTCAGTGTGCGTGCTTCCCTGCACCGTCAATCTGCCCCTGTT
CTGAAGGGGGAAATGAACAACTTACCTAAAACTACTGTTTGGCCAAGGGTCTCCGCCTCCCCAC
ATTCGTGATTGGCTTTGTTTGACAAGTCTGTAGCGCTAATACTTCATCAAAGGACCGGGTCTCT
GCTTAGGTCATTATTTCACATCTTTCCTTAGAAGTTCAGCTACTGCATTTCAGCTGGACCCGAT
ACCACCCCCTATTGGAAAGAGGTCAGATTGGACTCAATTTCAGCCCTAAATTTATGACATTACA
AAGTATTAGAATATGCTTCTTTATCCAAACTGTTTCTAGGCAAACTGATCCTTGCTTTTGGTGA
ATTAGACAGGACAGGGAAATCAGCTAGTTATACAAATGAGTAGATGGATATATGTCTGCTCAGT
TTCCAAGTCATCTATGAAGGAAATTTGCCTGAGTTGAACAAGTGACACTGTCATTGGCACTAAT
GTGATTTGTGCTTACAGTCATCACCATAGCTCTGCACTCTTGGTCAGCGGCATGGCTGTCTGGA
GCAGTGGAAGTATAATACTGCGTCCCAGTTGAGTGACACAACTCTGTCTTCACCTTGAATGAAG
CTTCAAGACTTAAGAACAATATTTATTTCCACTGATTTCTGCACTGGCCTGTGATGCGGATTCC
TAGTCGCATGCCTCACCTACAGCATCGTGTGCATTGCTGTCAAAATAAAATATATTTTGTCTTG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008764508 ⟹ XP_008762730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,523 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,715 (-)	NCBI
Rnor_6.0	6	24,069,351 - 24,084,758 (+)	NCBI

Sequence:

show sequence

CTAAACCTGAAGACTTGGAGGCCGAGGGGGGCTTCGACCCAGCTGAGGAGCGAAGAGCTGCTGG
CAGCGCCGATCCCCAGTGCGCAGAGAGAAGAGACTGAAAACCAAATATACAGCCATGTTTCCAC
GTGAATCCATTATAGCAGAATCAGAATATGCTACTTCTGGAAGGGGCAGAGTTTTGTAACCCTT
CCTGTGCTAGAACCAGTTTCTGTTTCTCTGAGAAAGACATCTAAAGTGAAGAGCTTTTCCCCTA
CCTATCTCAGTGTGCTGTAAGCAGGATAACCTTTCTTGGTTTTTAGAACTTCAGCTATCAAAAT
GGGCAGAATCTTTCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACA
ATCCTGACCAATCGCTCAGAACTCATCTCTACTCGGTTCACAGGCGCCACTGGTAGAGCATTTC
TTTTTAACAAGGTAGTTAACTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCG
CCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTT
GCTACTGAAGACAGCCAGCGTTATAAGGAAGGCCGTGTGATCCTGGAACGTGCACTAGTTCGAG
AGAGTGAAGGCTTTGAGGAGCATGTACCATCTGATAACTCTTGAAGAAAAAAGATAAACCCATC
TTTTCCCAGGTCTCCTTCACTGAAAACAAAAATCTCCTTACATACACTGTCACCTTAGCATCAG
AGTCGGATTCATGAACTGCGGAACAAGAGGTTGTGAGCATCTAAGATGGAAACTTTCTTCTTTC
TTCTTTTGTTTTGTTTTTTTTAATTTTGTATTTTCCATCCAACAGCAGTTTGTAGAGAGAATTT
TATGCATATGCCATTAATTTTTTCCCTGTGTTTACATCTTGAGGCAGATTTGCAACTACATGGT
GGGCTATGTAAGGGAAAAAATTGGGGTCCTTAGAGTGAAAAGGAGTGTTTTGTGTACATTTTGA
GTGGAGAATATGTCAAGAGCATGGTTTTTAAATTTATTTGGGCTTCATTTAAAATTTTCTTTTT
AACCCAGTTATTTCACTTAATTTGCTAGCTTCAAGAAGAGATCCGAATCTGTGCCCAGCGCTGG
AGGCTCAGTGTTAGCGTGGCTTGTGCTGGCCAGTGTGCCATATTCTTGTTGGAGAGGAACTGTA
GCACCAGAACCCATTCTTCCTTGTCAGTCTTGACCCACAGATGTCACCATCCCTAGTTCCTTGT
CACCACGTACTTGGTGTTGATTGGAAACTTTCTGAAATGGGGCAGAACTGCTTGGTTGTCTTTT
CCCATGTAACTTAAGCATAGTAATATAAATAAAGTGGTAGTTGGATGTTTTGGTCCTGTGTTAC
TTTTAAAAATACCTAATAAGAGAGCAAACGTTTGATAAGTGATTTTCTTAGTAGTTAAAGTGAT
TCTTCTCAGTCTTAGGCTGTCCTGACTATGTATAAGGTTTTTGTGTAGGTGAAAACACACTGTT
TAAACAGTGTTGTGTTTGGAAAACAGTTGAGCAAAATGTCAGTGTGCGTGCTTCCCTGCACCGT
CAATCTGCCCCTGTTCTGAAGGGGGAAATGAACAACTTACCTAAAACTACTGTTTGGCCAAGGG
TCTCCGCCTCCCCACATTCGTGATTGGCTTTGTTTGACAAGTCTGTAGCGCTAATACTTCATCA
AAGGACCGGGTCTCTGCTTAGGTCATTATTTCACATCTTTCCTTAGAAGTTCAGCTACTGCATT
TCAGCTGGACCCGATACCACCCCCTATTGGAAAGAGGTCAGATTGGACTCAATTTCAGCCCTAA
ATTTATGACATTACAAAGTATTAGAATATGCTTCTTTATCCAAACTGTTTCTAGGCAAACTGAT
CCTTGCTTTTGGTGAATTAGACAGGACAGGGAAATCAGCTAGTTATACAAATGAGTAGATGGAT
ATATGTCTGCTCAGTTTCCAAGTCATCTATGAAGGAAATTTGCCTGAGTTGAACAAGTGACACT
GTCATTGGCACTAATGTGATTTGTGCTTACAGTCATCACCATAGCTCTGCACTCTTGGTCAGCG
GCATGGCTGTCTGGAGCAGTGGAAGTATAATACTGCGTCCCAGTTGAGTGACACAACTCTGTCT
TCACCTTGAATGAAGCTTCAAGACTTAAGAACAATATTTATTTCCACTGATTTCTGCACTGGCC
TGTGATGCGGATTCCTAGTCGCATGCCTCACCTACAGCATCGTGTGCATTGCTGTCAAAATAAA
ATATATTTTGTCTTGCA

hide sequence

RefSeq Acc Id:

XM_008764509 ⟹ XP_008762731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,948 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,105 (-)	NCBI
Rnor_6.0	6	24,070,157 - 24,084,758 (+)	NCBI

Sequence:

show sequence

GCGGGCGTCACGTGGGCGCGATCAGCTGGGCCGGCTGCGGGCGGTCGGCCTGGCTCTGACCCCC
GCCGCTGCTTGGTGAGCCGACCGGGAGGCTCGTCCCTGCTGGCGTTGGGTAGGCACACTCCTGC
ACACCCCTTTAATCCACGCTGCTATCTAGGCAGGTTTTTAGAACTTCAGCTATCAAAATGGGCA
GAATCTTTCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACAATCCT
GACCAATCGCTCAGAACTCATCTCTACTCGGTTCACAGGCGCCACTGGTAGAGCATTTCTTTTT
AACAAGGTAGTTAACTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACA
TGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCTAC
TGAAGACAGCCAGCGTTATAAGGAAGGCCGTGTGATCCTGGAACGTGCACTAGTTCGAGAGAGT
GAAGGCTTTGAGGAGCATGTACCATCTGATAACTCTTGAAGAAAAAAGATAAACCCATCTTTTC
CCAGGTCTCCTTCACTGAAAACAAAAATCTCCTTACATACACTGTCACCTTAGCATCAGAGTCG
GATTCATGAACTGCGGAACAAGAGGTTGTGAGCATCTAAGATGGAAACTTTCTTCTTTCTTCTT
TTGTTTTGTTTTTTTTAATTTTGTATTTTCCATCCAACAGCAGTTTGTAGAGAGAATTTTATGC
ATATGCCATTAATTTTTTCCCTGTGTTTACATCTTGAGGCAGATTTGCAACTACATGGTGGGCT
ATGTAAGGGAAAAAATTGGGGTCCTTAGAGTGAAAAGGAGTGTTTTGTGTACATTTTGAGTGGA
GAATATGTCAAGAGCATGGTTTTTAAATTTATTTGGGCTTCATTTAAAATTTTCTTTTTAACCC
AGTTATTTCACTTAATTTGCTAGCTTCAAGAAGAGATCCGAATCTGTGCCCAGCGCTGGAGGCT
CAGTGTTAGCGTGGCTTGTGCTGGCCAGTGTGCCATATTCTTGTTGGAGAGGAACTGTAGCACC
AGAACCCATTCTTCCTTGTCAGTCTTGACCCACAGATGTCACCATCCCTAGTTCCTTGTCACCA
CGTACTTGGTGTTGATTGGAAACTTTCTGAAATGGGGCAGAACTGCTTGGTTGTCTTTTCCCAT
GTAACTTAAGCATAGTAATATAAATAAAGTGGTAGTTGGATGTTTTGGTCCTGTGTTACTTTTA
AAAATACCTAATAAGAGAGCAAACGTTTGATAAGTGATTTTCTTAGTAGTTAAAGTGATTCTTC
TCAGTCTTAGGCTGTCCTGACTATGTATAAGGTTTTTGTGTAGGTGAAAACACACTGTTTAAAC
AGTGTTGTGTTTGGAAAACAGTTGAGCAAAATGTCAGTGTGCGTGCTTCCCTGCACCGTCAATC
TGCCCCTGTTCTGAAGGGGGAAATGAACAACTTACCTAAAACTACTGTTTGGCCAAGGGTCTCC
GCCTCCCCACATTCGTGATTGGCTTTGTTTGACAAGTCTGTAGCGCTAATACTTCATCAAAGGA
CCGGGTCTCTGCTTAGGTCATTATTTCACATCTTTCCTTAGAAGTTCAGCTACTGCATTTCAGC
TGGACCCGATACCACCCCCTATTGGAAAGAGGTCAGATTGGACTCAATTTCAGCCCTAAATTTA
TGACATTACAAAGTATTAGAATATGCTTCTTTATCCAAACTGTTTCTAGGCAAACTGATCCTTG
CTTTTGGTGAATTAGACAGGACAGGGAAATCAGCTAGTTATACAAATGAGTAGATGGATATATG
TCTGCTCAGTTTCCAAGTCATCTATGAAGGAAATTTGCCTGAGTTGAACAAGTGACACTGTCAT
TGGCACTAATGTGATTTGTGCTTACAGTCATCACCATAGCTCTGCACTCTTGGTCAGCGGCATG
GCTGTCTGGAGCAGTGGAAGTATAATACTGCGTCCCAGTTGAGTGACACAACTCTGTCTTCACC
TTGAATGAAGCTTCAAGACTTAAGAACAATATTTATTTCCACTGATTTCTGCACTGGCCTGTGA
TGCGGATTCCTAGTCGCATGCCTCACCTACAGCATCGTGTGCATTGCTGTCAAAATAAAATATA
TTTTGTCTTGCA

hide sequence

RefSeq Acc Id:

XM_008764510 ⟹ XP_008762732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,984 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,105 (-)	NCBI
Rnor_6.0	6	24,070,157 - 24,084,758 (+)	NCBI

Sequence:

show sequence

GCGGGCGTCACGTGGGCGCGATCAGCTGGGCCGGCTGCGGGCGGTCGGCCTGGCTCTGACCCCC
GCCGCTGCTTGGTGAGCCGACCGGGAGGCTCGTCCCTGCTGGCGTTGGGTTTTTAGAACTTCAG
CTATCAAAATGGGCAGAATCTTTCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAA
CTGTGATACAATCCTGACCAATCGCTCAGAACTCATCTCTACTCGGTTCACAGGCGCCACTGGT
AGAGCATTTCTTTTTAACAAGGTAGTTAACTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGC
TCACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGAT
CTATGAGTTTGCTACTGAAGACAGCCAGCGTTATAAGGAAGGCCGTGTGATCCTGGAACGTGCA
CTAGTTCGAGAGAGTGAAGGCTTTGAGGAGCATGTACCATCTGATAACTCTTGAAGAAAAAAGA
TAAACCCATCTTTTCCCAGGTCTCCTTCACTGAAAACAAAAATCTCCTTACATACACTGTCACC
TTAGCATCAGAGTCGGATTCATGAACTGCGGAACAAGAGGTTGTGAGCATCTAAGATGGAAACT
TTCTTCTTTCTTCTTTTGTTTTGTTTTTTTTAATTTTGTATTTTCCATCCAACAGCAGTTTGTA
GAGAGAATTTTATGCATATGCCATTAATTTTTTCCCTGTGTTTACATCTTGAGGCAGATTTGCA
ACTACATGGTGGGCTATGTAAGGGAAAAAATTGGGGTCCTTAGAGTGAAAAGGAGTGTTTTGTG
TACATTTTGAGTGGAGAATATGTCAAGAGCATGGTTTTTAAATTTATTTGGGCTTCATTTAAAA
TTTTCTTTTTAACCCAGTTATTTCACTTAATTTGCTAGCTTCAAGAAGAGATCCGAATCTGTGC
CCAGCGCTGGAGGCTCAGTGTTAGCGTGGCTTGTGCTGGCCAGTGTGCCATATTCTTGTTGGAG
AGGAACTGTAGCACCAGAACCCATTCTTCCTTGTCAGTCTTGACCCACAGATGTCACCATCCCT
AGTTCCTTGTCACCACGTACTTGGTGTTGATTGGAAACTTTCTGAAATGGGGCAGAACTGCTTG
GTTGTCTTTTCCCATGTAACTTAAGCATAGTAATATAAATAAAGTGGTAGTTGGATGTTTTGGT
CCTGTGTTACTTTTAAAAATACCTAATAAGAGAGCAAACGTTTGATAAGTGATTTTCTTAGTAG
TTAAAGTGATTCTTCTCAGTCTTAGGCTGTCCTGACTATGTATAAGGTTTTTGTGTAGGTGAAA
ACACACTGTTTAAACAGTGTTGTGTTTGGAAAACAGTTGAGCAAAATGTCAGTGTGCGTGCTTC
CCTGCACCGTCAATCTGCCCCTGTTCTGAAGGGGGAAATGAACAACTTACCTAAAACTACTGTT
TGGCCAAGGGTCTCCGCCTCCCCACATTCGTGATTGGCTTTGTTTGACAAGTCTGTAGCGCTAA
TACTTCATCAAAGGACCGGGTCTCTGCTTAGGTCATTATTTCACATCTTTCCTTAGAAGTTCAG
CTACTGCATTTCAGCTGGACCCGATACCACCCCCTATTGGAAAGAGGTCAGATTGGACTCAATT
TCAGCCCTAAATTTATGACATTACAAAGTATTAGAATATGCTTCTTTATCCAAACTGTTTCTAG
GCAAACTGATCCTTGCTTTTGGTGAATTAGACAGGACAGGGAAATCAGCTAGTTATACAAATGA
GTAGATGGATATATGTCTGCTCAGTTTCCAAGTCATCTATGAAGGAAATTTGCCTGAGTTGAAC
AAGTGACACTGTCATTGGCACTAATGTGATTTGTGCTTACAGTCATCACCATAGCTCTGCACTC
TTGGTCAGCGGCATGGCTGTCTGGAGCAGTGGAAGTATAATACTGCGTCCCAGTTGAGTGACAC
AACTCTGTCTTCACCTTGAATGAAGCTTCAAGACTTAAGAACAATATTTATTTCCACTGATTTC
TGCACTGGCCTGTGATGCGGATTCCTAGTCGCATGCCTCACCTACAGCATCGTGTGCATTGCTG
TCAAAATAAAATATATTTTGTCTTGCA

hide sequence

RefSeq Acc Id:

XM_039111904 ⟹ XP_038967832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,895 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,105 (-)	NCBI

RefSeq Acc Id:

XM_039111905 ⟹ XP_038967833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,523 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,688 (-)	NCBI

RefSeq Acc Id:

XM_039111907 ⟹ XP_038967835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,523 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,715 (-)	NCBI

RefSeq Acc Id:

XM_063261618 ⟹ XP_063117688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,895 (-)	NCBI

RefSeq Acc Id:

XM_063261619 ⟹ XP_063117689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,578 (-)	NCBI

RefSeq Acc Id:

XM_063261620 ⟹ XP_063117690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,895 (-)	NCBI

RefSeq Acc Id:

XM_063261622 ⟹ XP_063117692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,523 (-)	NCBI

RefSeq Acc Id:

XM_063261623 ⟹ XP_063117693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,895 (-)	NCBI

RefSeq Acc Id:

XM_063261624 ⟹ XP_063117694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,422,624 (-)	NCBI

RefSeq Acc Id:

XM_063261625 ⟹ XP_063117695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,453 (-)	NCBI

RefSeq Acc Id:

XR_005505462

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	28,408,079 - 28,423,536 (-)	NCBI
mRatBN7.2	6	22,656,284 - 22,671,741 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030298	(Get FASTA)	NCBI Sequence Viewer
	XP_008762730	(Get FASTA)	NCBI Sequence Viewer
	XP_008762731	(Get FASTA)	NCBI Sequence Viewer
	XP_008762732	(Get FASTA)	NCBI Sequence Viewer
	XP_038967832	(Get FASTA)	NCBI Sequence Viewer
	XP_038967833	(Get FASTA)	NCBI Sequence Viewer
	XP_038967835	(Get FASTA)	NCBI Sequence Viewer
	XP_063117688	(Get FASTA)	NCBI Sequence Viewer
	XP_063117689	(Get FASTA)	NCBI Sequence Viewer
	XP_063117690	(Get FASTA)	NCBI Sequence Viewer
	XP_063117692	(Get FASTA)	NCBI Sequence Viewer
	XP_063117693	(Get FASTA)	NCBI Sequence Viewer
	XP_063117694	(Get FASTA)	NCBI Sequence Viewer
	XP_063117695	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02863	(Get FASTA)	NCBI Sequence Viewer
	EDM02864	(Get FASTA)	NCBI Sequence Viewer
	EDM02865	(Get FASTA)	NCBI Sequence Viewer
	EDM02866	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038910
	ENSRNOP00000038910.4

RefSeq Acc Id:	NP_001030298 ⟸ NM_001035221
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTG RHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS hide sequence

RefSeq Acc Id:	XP_008762730 ⟸ XM_008764508
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTG RHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS hide sequence

RefSeq Acc Id:	XP_008762731 ⟸ XM_008764509
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTG RHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS hide sequence

RefSeq Acc Id:	XP_008762732 ⟸ XM_008764510
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTG RHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS hide sequence

Ensembl Acc Id:

ENSRNOP00000038910 ⟸ ENSRNOT00000035362

RefSeq Acc Id:	XP_038967835 ⟸ XM_039111907
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967833 ⟸ XM_039111905
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967832 ⟸ XM_039111904
- Peptide Label:	isoform X1
- UniProtKB:	D4A4Q3 (UniProtKB/TrEMBL), A6HA10 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092955 ⟸ ENSRNOT00000101401

Ensembl Acc Id:

ENSRNOP00000083729 ⟸ ENSRNOT00000103854

RefSeq Acc Id:	XP_063117692 ⟸ XM_063261622
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117695 ⟸ XM_063261625
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117690 ⟸ XM_063261620
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117688 ⟸ XM_063261618
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117693 ⟸ XM_063261623
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117694 ⟸ XM_063261624
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117689 ⟸ XM_063261619
- Peptide Label:	isoform X1
- UniProtKB:	A6HA10 (UniProtKB/TrEMBL), D4A4Q3 (UniProtKB/TrEMBL)

Protein Domains

Yippee

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4Q3-F1-model_v2	AlphaFold	D4A4Q3	1-121	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694421

Promoter ID:

EPDNEW_R4946

Type:

multiple initiation site

Name:

Ypel5_1

Description:

yippee-like 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,064,740 - 24,064,800	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309657	AgrOrtholog
BioCyc Gene	G2FUF-38407	BioCyc
Ensembl Genes	ENSRNOG00000026742	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035362	ENTREZGENE
	ENSRNOT00000035362.6	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7453174	IMAGE-MGC_LOAD
InterPro	Yippee	UniProtKB/TrEMBL
	Yippee	UniProtKB/TrEMBL
	Yippee_fam	UniProtKB/TrEMBL
KEGG Report	rno:298792	UniProtKB/TrEMBL
MGC_CLONE	MGC:125210	IMAGE-MGC_LOAD
NCBI Gene	298792	ENTREZGENE
PANTHER	PTHR13848	UniProtKB/TrEMBL
Pfam	Yippee	UniProtKB/TrEMBL
PhenoGen	Ypel5	PhenoGen
PROSITE	YIPPEE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026742	RatGTEx
UniProt	A6HA10	ENTREZGENE, UniProtKB/TrEMBL
	D4A4Q3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ypel5	yippee-like 5	LOC102553396	uncharacterized LOC102553396	Data merged from RGD:7593366	737654	PROVISIONAL
2015-07-30	Ypel5	yippee-like 5	Ypel5	yippee-like 5 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-18	LOC102553396	uncharacterized LOC102553396			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Ypel5	yippee-like 5 (Drosophila)	Ypel5_predicted	yippee-like 5 (Drosophila) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ypel5_predicted	yippee-like 5 (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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