Aga (aspartylglucosaminidase) - Rat Genome Database

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Gene: Aga (aspartylglucosaminidase) Rattus norvegicus
Analyze
Symbol: Aga
Name: aspartylglucosaminidase
RGD ID: 1309646
Description: Enables N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity and protein self-association. Predicted to be involved in proteolysis. Predicted to be located in endoplasmic reticulum and extracellular space. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in aspartylglucosaminuria and lysosomal storage disease. Orthologous to human AGA (aspartylglucosaminidase); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glycosylasparaginase; LOC290923; MGC112709; n(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase; N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,191,215 - 45,249,537 (-)NCBIGRCr8
mRatBN7.21638,504,661 - 38,516,607 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1638,504,663 - 38,516,606 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1643,852,185 - 43,864,091 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01647,212,763 - 47,224,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01642,568,414 - 42,580,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01641,222,225 - 41,234,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1641,222,238 - 41,234,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01640,992,072 - 41,004,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41641,383,536 - 41,395,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11641,383,601 - 41,395,548 (-)NCBI
Celera1636,605,222 - 36,617,080 (-)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
endoplasmic reticulum  (IEA,ISO)
extracellular space  (IEA,ISO)
lysosome  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Co-localization of hydrolytic enzymes with widely disparate pH optima: implications for the regulation of lysosomal pH. Butor C, etal., J Cell Sci. 1995 Jun;108 ( Pt 6):2213-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Aspartylglucosaminuria: cDNA encoding human aspartylglucosaminidase and the missense mutation causing the disease. Ikonen E, etal., EMBO J. 1991 Jan;10(1):51-8.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Purification and characterization of rat liver glycosylasparaginase. Tollersrud OK and Aronson NN Jr, Biochem J. 1989 May 15;260(1):101-8.
Additional References at PubMed
PMID:1281977   PMID:1554372   PMID:1904874   PMID:8586423   PMID:8776587   PMID:12477932   PMID:15489334   PMID:23376485   PMID:25645918   PMID:29514215  


Genomics

Comparative Map Data
Aga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,191,215 - 45,249,537 (-)NCBIGRCr8
mRatBN7.21638,504,661 - 38,516,607 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1638,504,663 - 38,516,606 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1643,852,185 - 43,864,091 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01647,212,763 - 47,224,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01642,568,414 - 42,580,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01641,222,225 - 41,234,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1641,222,238 - 41,234,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01640,992,072 - 41,004,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41641,383,536 - 41,395,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11641,383,601 - 41,395,548 (-)NCBI
Celera1636,605,222 - 36,617,080 (-)NCBICelera
Cytogenetic Map16p11NCBI
AGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384177,430,774 - 177,442,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4177,430,774 - 177,442,437 (-)EnsemblGRCh38hg38GRCh38
GRCh374178,351,928 - 178,363,591 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364178,588,918 - 178,600,585 (-)NCBINCBI36Build 36hg18NCBI36
Build 344178,727,072 - 178,738,740NCBI
Celera4175,679,083 - 175,690,820 (-)NCBICelera
Cytogenetic Map4q34.3NCBI
HuRef4174,102,201 - 174,113,937 (-)NCBIHuRef
CHM1_14178,328,375 - 178,340,109 (-)NCBICHM1_1
T2T-CHM13v2.04180,769,443 - 180,781,108 (-)NCBIT2T-CHM13v2.0
Aga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39853,964,718 - 53,976,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl853,964,762 - 53,976,456 (+)EnsemblGRCm39 Ensembl
GRCm38853,511,683 - 53,523,422 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl853,511,727 - 53,523,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv37854,597,080 - 54,608,776 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36855,010,424 - 55,022,120 (+)NCBIMGSCv36mm8
Celera856,224,973 - 56,236,712 (+)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.13NCBI
Aga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540330,471,809 - 30,482,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540330,471,809 - 30,482,653 (+)NCBIChiLan1.0ChiLan1.0
AGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23175,176,804 - 175,188,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14175,540,655 - 175,551,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04169,624,480 - 169,635,810 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14181,859,116 - 181,870,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4181,855,136 - 181,870,473 (-)Ensemblpanpan1.1panPan2
AGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11652,314,860 - 52,324,879 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1652,314,535 - 52,324,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,809,385 - 47,818,758 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01654,618,058 - 54,629,014 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1654,618,088 - 54,629,029 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11652,515,396 - 52,524,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01653,109,738 - 53,120,301 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01653,347,863 - 53,357,457 (+)NCBIUU_Cfam_GSD_1.0
Aga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494327,436,705 - 27,447,598 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365167,847,356 - 7,861,966 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365167,850,995 - 7,861,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1539,701,310 - 39,713,496 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11539,702,900 - 39,714,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21545,613,331 - 45,623,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17123,532,215 - 123,544,658 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7123,528,800 - 123,544,623 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037103,649,972 - 103,662,332 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247698,549,598 - 8,560,856 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247698,549,545 - 8,560,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aga
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:85
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000000120
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat

Markers in Region
RH134567  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 6 8 74 35 35 11 6
Low 2 3 6 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000120   ⟹   ENSRNOP00000000120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1638,504,665 - 38,516,595 (-)Ensembl
Rnor_6.0 Ensembl1641,222,238 - 41,234,095 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107358   ⟹   ENSRNOP00000093756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1638,504,663 - 38,516,593 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116014   ⟹   ENSRNOP00000078440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1638,504,663 - 38,516,606 (-)Ensembl
RefSeq Acc Id: NM_001031641   ⟹   NP_001026811
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,237,565 - 45,249,423 (-)NCBI
mRatBN7.21638,504,674 - 38,516,532 (-)NCBI
Rnor_6.01641,222,238 - 41,234,095 (-)NCBI
Rnor_5.01640,992,072 - 41,004,008 (-)NCBI
RGSC_v3.41641,383,536 - 41,395,394 (-)RGD
Celera1636,605,222 - 36,617,080 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253111   ⟹   XP_006253173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,237,552 - 45,249,510 (-)NCBI
mRatBN7.21638,504,661 - 38,516,607 (-)NCBI
Rnor_6.01641,222,225 - 41,234,169 (-)NCBI
Rnor_5.01640,992,072 - 41,004,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094423   ⟹   XP_038950351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,237,552 - 45,249,429 (-)NCBI
mRatBN7.21638,504,661 - 38,516,579 (-)NCBI
RefSeq Acc Id: XM_039094424   ⟹   XP_038950352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,237,552 - 45,249,418 (-)NCBI
mRatBN7.21638,504,661 - 38,516,535 (-)NCBI
RefSeq Acc Id: XM_063275263   ⟹   XP_063131333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,220,858 - 45,249,537 (-)NCBI
RefSeq Acc Id: XR_010058288
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,191,215 - 45,249,537 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001026811   ⟸   NM_001031641
- Peptide Label: precursor
- UniProtKB: Q4G065 (UniProtKB/Swiss-Prot),   P30919 (UniProtKB/Swiss-Prot),   A6JPI4 (UniProtKB/TrEMBL),   A0A8I5ZKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253173   ⟸   XM_006253111
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AL08 (UniProtKB/TrEMBL),   A0A8I5ZKU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000120   ⟸   ENSRNOT00000000120
RefSeq Acc Id: XP_038950351   ⟸   XM_039094423
- Peptide Label: isoform X3
- UniProtKB: A6JPI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950352   ⟸   XM_039094424
- Peptide Label: isoform X3
- UniProtKB: A6JPI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093756   ⟸   ENSRNOT00000107358
RefSeq Acc Id: ENSRNOP00000078440   ⟸   ENSRNOT00000116014
RefSeq Acc Id: XP_063131333   ⟸   XM_063275263
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P30919-F1-model_v2 AlphaFold P30919 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700085
Promoter ID:EPDNEW_R10609
Type:multiple initiation site
Name:Aga_1
Description:aspartylglucosaminidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01641,234,103 - 41,234,163EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309646 AgrOrtholog
BioCyc Gene G2FUF-11453 BioCyc
BioCyc Pathway ASPARAGINE-DEG1-PWY-1 [L-asparagine degradation III (mammalian)] BioCyc
BioCyc Pathway Image ASPARAGINE-DEG1-PWY-1 BioCyc
Ensembl Genes ENSRNOG00000000108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055007800 UniProtKB/Swiss-Prot
  ENSRNOG00060008622 UniProtKB/Swiss-Prot
  ENSRNOG00065015138 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000120 ENTREZGENE
  ENSRNOT00000000120.4 UniProtKB/Swiss-Prot
  ENSRNOT00000107358.1 UniProtKB/TrEMBL
  ENSRNOT00000116014.1 UniProtKB/TrEMBL
  ENSRNOT00055013062 UniProtKB/Swiss-Prot
  ENSRNOT00060014394 UniProtKB/Swiss-Prot
  ENSRNOT00065025075 UniProtKB/Swiss-Prot
Gene3D-CATH (Glycosyl)asparaginase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7366394 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_T2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:112709 IMAGE-MGC_LOAD
NCBI Gene 290923 ENTREZGENE
PANTHER N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10188 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Asparaginase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Aga PhenoGen
RatGTEx ENSRNOG00000000108 RatGTEx
  ENSRNOG00055007800 RatGTEx
  ENSRNOG00060008622 RatGTEx
  ENSRNOG00065015138 RatGTEx
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZKU5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AL08 ENTREZGENE, UniProtKB/TrEMBL
  A6JPI3_RAT UniProtKB/TrEMBL
  A6JPI4 ENTREZGENE, UniProtKB/TrEMBL
  A6JPI5 ENTREZGENE, UniProtKB/TrEMBL
  ASPG_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q4G065 ENTREZGENE
UniProt Secondary Q4G065 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Aga  aspartylglucosaminidase  Aga_predicted  aspartylglucosaminidase (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Aga_predicted  aspartylglucosaminidase (predicted)      Symbol and Name status set to approved 70820 APPROVED