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Gene: Usp40 (ubiquitin specific peptidase 40) Rattus norvegicus

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Symbol:

Usp40

Name:

ubiquitin specific peptidase 40

RGD ID:

1309613

Description:

Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP40 (ubiquitin specific peptidase 40); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100911860; LOC316599; LRRGT00071; sorbitol dehydrogenase-like; ubiquitin carboxyl-terminal hydrolase 40; ubiquitin carboxyl-terminal hydrolase 40-like; ubiquitin specific protease 40; ubiquitin thioesterase 40

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP40 (ubiquitin specific peptidase 40)	RGD	RGD
Mus musculus (house mouse):	Usp40 (ubiquitin specific peptidase 40)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Usp40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp40 (ubiquitin specific peptidase 40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SORD (sorbitol dehydrogenase)	HGNC	EggNOG
Alliance orthologs ³
Homo sapiens (human):	USP40 (ubiquitin specific peptidase 40)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp40 (ubiquitin specific peptidase 40)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp40 (ubiquitin specific peptidase 40)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp40	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp40	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,055,741 - 96,126,766 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl				GRCr8
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	97,032,175 - 97,103,042 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,168,363 - 102,239,234 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,536,129 - 100,607,106 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,072,096 - 95,143,092 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,142 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	86,169,618 - 86,240,347 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

calcitriol (ISO)

carbamazepine (ISO)

chlorpyrifos (EXP)

chromium(6+) (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

ethanol (ISO)

FR900359 (ISO)

glyphosate (EXP)

GSK-J4 (ISO)

hydralazine (ISO)

imidacloprid (EXP)

indometacin (ISO)

iron dichloride (ISO)

ketoconazole (ISO)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

Triptolide (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (ISO)

protein deubiquitination (IEA)

proteolysis (IEA)

regulation of protein stability (IBA)

Cellular Component

cytoplasm (ISO)

cytosol (IBA)

motile cilium (IEA)

nucleus (IBA)

Molecular Function

cysteine-type deubiquitinase activity (IBA,IEA,ISO)

cysteine-type peptidase activity (IEA)

D-xylulose reductase activity (IEA)

hydrolase activity (IEA)

L-iditol 2-dehydrogenase (NAD+) activity (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (IEA)

peptidase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases.	Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Usp40
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	96,055,741 - 96,126,766 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl				GRCr8
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	97,032,175 - 97,103,042 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	102,168,363 - 102,239,234 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	100,536,129 - 100,607,106 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	95,072,096 - 95,143,092 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,142 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	86,169,618 - 86,240,347 (-)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

USP40
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	233,475,526 - 233,566,782 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	233,475,526 - 233,566,782 (-)	Ensembl			hg38	GRCh38
GRCh37	2	234,384,172 - 234,475,428 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	234,048,904 - 234,134,606 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	228,105,436 - 228,195,522 (-)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	226,184,857 - 226,274,836 (-)	NCBI		HuRef
CHM1_1	2	234,390,167 - 234,480,204 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	233,964,044 - 234,055,315 (-)	NCBI		T2T-CHM13v2.0

Usp40
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	87,872,841 - 87,936,308 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	87,872,841 - 87,936,273 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	87,945,119 - 88,008,582 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	87,945,119 - 88,008,551 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	89,841,696 - 89,905,126 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	89,776,292 - 89,839,722 (-)	NCBI		MGSCv36	mm8
Celera	1	90,903,174 - 90,967,221 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	44.45	NCBI

Usp40
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	2,661,213 - 2,739,146 (+)	Ensembl
ChiLan1.0	NW_004955453	2,661,233 - 2,739,742 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP40
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	136,078,773 - 136,169,973 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	136,093,737 - 136,184,943 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	120,704,893 - 120,796,084 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	239,615,598 - 239,705,721 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	239,617,442 - 239,705,721 (-)	Ensembl			panPan2	panpan1.1

USP40
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	44,965,276 - 45,021,539 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	45,460,119 - 45,537,523 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	45,224,993 - 45,302,504 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	45,216,601 - 45,302,479 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	45,149,152 - 45,226,628 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	44,995,742 - 45,072,784 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	45,150,957 - 45,228,463 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	187,113,531 - 187,179,765 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	3,760,280 - 3,826,206 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	3,759,982 - 3,826,190 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP40
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	133,870,834 - 133,952,863 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	133,870,831 - 133,952,863 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	148,340,802 - 148,418,018 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP40
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	119,516,114 - 119,609,519 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	119,514,754 - 119,609,521 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	79,890,302 - 79,984,155 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp40
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	5,961,591 - 6,038,215 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624843	5,958,316 - 6,042,471 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp40
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	160,054,653 - 160,123,592 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp40
556 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	144
Count of miRNA genes:	112
Interacting mature miRNAs:	120
Transcripts:	ENSRNOT00000064171
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	86720043	110356905	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	85262459	109044727	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Markers in Region

D9Got234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	88,619,799 - 88,619,947 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	95,083,982 - 95,084,129	NCBI	Rnor6.0
Rnor_6.0	9	91,041,375 - 91,041,522	NCBI	Rnor6.0
Rnor_5.0	9	90,778,288 - 90,778,435	UniSTS	Rnor5.0
Rnor_5.0	9	94,803,090 - 94,803,237	UniSTS	Rnor5.0
RGSC_v3.4	9	86,909,740 - 86,909,887	UniSTS	RGSC3.4
Celera	9	86,181,488 - 86,181,635	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH130513

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	9	90,799,524 - 90,799,742	NCBI	Rnor5.0
Rnor_5.0	9	94,824,326 - 94,824,544	NCBI	Rnor5.0
Rnor_5.0	3	120,745,107 - 120,745,994	NCBI	Rnor5.0
RGSC_v3.4	3	109,046,603 - 109,047,489	UniSTS	RGSC3.4
RGSC_v3.4	9	86,930,977 - 86,931,194	UniSTS	RGSC3.4
Celera	3	108,112,092 - 108,112,978	UniSTS
Celera	9	86,202,725 - 86,202,942	UniSTS
Cytogenetic Map	9	q35	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH137157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	88,608,014 - 88,608,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	95,072,197 - 95,072,358	NCBI	Rnor6.0
Rnor_5.0	9	94,791,305 - 94,791,466	UniSTS	Rnor5.0
RGSC_v3.4	9	86,897,955 - 86,898,116	UniSTS	RGSC3.4
Celera	9	86,169,703 - 86,169,864	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH141218

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	9	90,798,495 - 90,798,697	NCBI	Rnor5.0
Rnor_5.0	9	94,823,297 - 94,823,499	NCBI	Rnor5.0
Rnor_5.0	3	120,746,689 - 120,746,892	NCBI	Rnor5.0
RGSC_v3.4	3	109,048,185 - 109,048,387	UniSTS	RGSC3.4
RGSC_v3.4	9	86,929,948 - 86,930,149	UniSTS	RGSC3.4
Celera	3	108,113,674 - 108,113,876	UniSTS
Celera	9	86,201,696 - 86,201,897	UniSTS
Cytogenetic Map	9	q35	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC092530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY387057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064171 ⟹ ENSRNOP00000060806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,072,112 - 95,143,092 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000064642 ⟹ ENSRNOP00000059419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	91,038,064 - 91,100,482 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000070819 ⟹ ENSRNOP00000064567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	96,055,741 - 96,092,368 (-)	Ensembl
mRatBN7.2 Ensembl	9	88,607,930 - 88,644,557 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,073,536 - 95,108,739 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085325 ⟹ ENSRNOP00000074830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl
mRatBN7.2 Ensembl	9	88,607,930 - 88,678,914 (-)	Ensembl
Rnor_6.0 Ensembl	9	95,073,337 - 95,143,142 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126955 ⟹ ENSRNOP00000112752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	96,055,741 - 96,126,721 (-)	Ensembl

RefSeq Acc Id:

NM_001134885 ⟹ NP_001128357

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,721 (-)	NCBI
mRatBN7.2	9	88,607,930 - 88,678,914 (-)	NCBI
Rnor_6.0	9	95,072,112 - 95,143,092 (-)	NCBI
Rnor_5.0	9	94,791,208 - 94,862,210 (-)	NCBI
RGSC_v3.4	9	86,897,870 - 86,968,850 (-)	RGD
Celera	9	86,169,618 - 86,240,347 (-)	RGD

Sequence:

show sequence

TCCAGAGACCCGGCCTCGCCGGCATGGCGGTGCCTGTTCGGAGCGAGTTCGTTTACTCTGTGCT
GTGGCCAGGGCGGGGGTCTGGGCTGTAGGCAGATAGCGTTTAGTTCCACAATGTTTGGGAACCT
ATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGTATGGAAGCGGGAAGAAATTAAAGACT
AAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAAGTTAAGTGGAATCAGAAATCAGGGTG
GAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCACTTCACACCTGAATTCAGAGAAGCTTT
ATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGGATAAGGATAAACCCGAAGCAAAGGTC
CGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCAGCTTCTGCTCGTGGACCAGGAGGCTG
CATCCACCACAGACCTCACTGACAGCTTCGGGTGGACCAGCGATGAGGAAATGAGACAACACGA
TGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGGAAACTTCTTTAGTTGGGACCTCTGGC
CATGACCTCATTCATCGTCTATACCATGGCACCATTGTGAACCAGATTGTTTGCAAAGAGTGTA
AGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTGACAGTAGCAGTCAAAAACGTATCTGG
TTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGGAAATTTTCGACTATGATAACTTGTAC
CACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAAGTCTGCCAAATTACGTAAGCTGCCTC
CTTTTCTTACTATTTCATTACTAAGATTTAATTTTGATTTTGTGAAATGTGAACGCTACAAGGA
TACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCAAGCCTTTCTGTGAACAGAGTGACATG
GATGACATGGAATATATGTATGACCTCTTCTCTGTCATTATCCACAAAGGTGGCTGCTATGGAG
GTCATTACCATGTGTACATTAAAGACGTTGATCATCTCGGCAACTGGCAATGTCAAGAGGAGAT
AAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATGAAGAAGAGACTGATGATCCACTGGTG
GTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCAAATTCCTGTTGATCAGCTGGGCCAGA
AACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAGTACAGGAAACAGCATGGACCACTGCG
AAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCAGCACAGATGAAAGTACAGTCAGTCTC
CAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACAGAGCCATGAACAGATTGCACACACAC
TTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGTTGCCCACACTGGTTTGACATCAATGA
TTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGCAGCAGTTCCAGGGTAAAGAAAGTGCC
TACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACCCTCTGAAGCTCAAGCCAATCCAAGAT
ACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCAGCCAACGTTCTCCTGCAGACGAGAAG
GGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGCATCTCCACTTGGGTCCTCACTACCGT
TTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGACTGAGAGCGTGTGGGACTTAACATTTG
ATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATATTTCAGCTATTGGAGTTCTGGGAAGG
AGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAGGACTTCATGTGTACCATACCCTCGAT
GGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGATGAGGAAGACATCTTTGTATGGAATG
GGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTTGACTGTGAACCTCTGCTGTTACACAT
TCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTGAGCAGTTGGTGGAGTCGCCACATGTC
TTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGCCTTGGGCACCCCAGAAGGCGTCCTCC
TCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGGACTGCTATTCCCCAAGAAGACATGAA
GAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCTTAATTTTGGTTCAGGATTCAGACAGT
GATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGACCAGCAGCATGAATGAGCTCAACTGGC
TCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAGAAGCAGGTTCAGATAGCCGTGACCAT
GCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAACTA
GCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGGGAGGCTCCTTTGTCCAGTACCAGATA
CCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGCTCCGTGGGACTGTGTCTGGGGAAAGC
ACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGGGGACTGACATTCACCCTGGGGCAGAG
CTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGATTGTTTAAAGATAATGCTGGAGAAGT
CAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATGGATTGGTGCTATGAAGCTGGTGAGCC
TTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGATATGTTCTGGGGACACTTTGCTGTTA
ACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGATGCCCATCTGGTGGTACCAGCCTGAAA
GGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAACTGTGCCTTTTCTCAAGGTAGCAGCTG
GGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGCCTGCAGAAGTCTCTCTCCTCTACTTG
GGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGAACTGAAGTCTAAGGCCTTGGCCTTGC
CTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTGCTTAGAGTCTGGACAGTGGAGAGCAA
GCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGAGA
ACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGACTTGGGCCCCCGGGATGTACTGCTGA
GGACACAGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGACAC
CACCAGAGGATGGACTGCTGGCTCCTTGAGGCAGAGAGTGGCTGACTTCTATTCTCTTCCTGTG
GAGAAAATTGAAATTGCCAAATATTTTCCTGAAAAGTTTGAGTGGCTTCCAATATCTAGCTGGA
ATCAGCAAATTGCCAAAAGGAAAAAGAAGAAAAACCAAGATACTTTGCAAGGGGGACCATATTA
CTTAAAAGACGGAGACACTATTGGCATTAAGAATCTCTTGTTTGATGACAATGATGATTTCAGC
ACAATCAGAGATGACATTGGAAAGGAAAACCAGAAGCGGACAGCTCTGGAGAAAAAGAAAAGCC
GAGAAGTCCAACGTACACAGAGCAGCGATGTGTTCTCCAATTCAGGAATGCCTACTAGGCCCCG
GGGACCAGAAGCTTCTCTGTCCATCCATGTTGCGAGCTTCAGATAGCCCCTGCAGCAGTATGTC
CTGTGTTCCAGATAGAACCGTCCTGTCAGTTCTATGACAGAAACCTTGTGGGCTTATAGTGGAC
AAGCTGGTTGCCTCCACAGCCAGTGATCTCAAGTCTTCAGCTTTGTGACAGGCTAAGGGACAGC
ACTTCTCAGATCAAGCAGGTGCAGCTGACCCCAGGCACTGTGCCAACTGGAATACATCTCCCAT
GCCTGATCTTAGTGGCCTCTCCTGAAAGCATACTTCTGGACAATGGCAAGTTGTTCAAAGAGGA
CAATTCTGATAGGTAAGACACAAGGTCAGTTACCTACCCATTCTTGAGGTGACCAGTTAGTCAT
CTAGTTCTGACACCTCACTGAAGCTGCAACGGAAGGATGTGTATCTTGACTTCATTCCCAGTTC
TAGCCCTCACTATGCCATGCGCCTCCTCTTGGGCCAAATTTAAAGTGGGACTCTTAAGACAGCT
GTGCAAGAAGAGCTGCGTGTGGCATCAACTGCCCTGTTGTCTACCACTTACACACTCTGGCAAG
AGGCAGGACCATCAAAGAAGCCTAGCACAACAAATCCAGGCTCCCAGTTGTCCTAGGCAAACTG
AGGCCTCTTCCTTCTCAGTCAGCACAGGTAACTGAAGAGATATGGTGTTTATGTACTGTAATTA
ATATACTGTCAAAACAGCATCAGCTACTGAACTGGCAGGTTAGGCCTGGGCTGACTTAGCCTAT
GACAGTATTCCTAAGAGGGTATCGGTTTCTTACCGACTCTGCCATGTCTTCATGTAACAGAACT
GAGGTGGTGTAAGACAAGGAAAAGTTACTTTGGCCTGGGCTCAGCTGGCCCTTGCTGGCTAAAA
GCTTTTCATATTCTGCTGTTAGCCATACTGGCTTCTCTGTGGAGCTGCTGATCAGCACGTAATC
CTGCTCTTCCTTTGTCTTCCCAACACCATCTGCCAGAGTTGGCAGCGTCGTGTTAGGTGGCTGC
TTCTATTGAAGCACTTGGATTAGAAGATGTTGGACTTGGATTGGTTACCTTTTCTGGCCATGTC
CTTGTAGCTACACCCCAAGGGGTTCTGGGAGACCCAGATAGTAAACATTACTTGACCACAACTG
AGTCCTCTGGGTACTGGCTACTGTTTCTTGTACTGTAACTGACATAGTTCCTTAGTTTGTTCTT
TCACCCCAGCCCTGACAATATAGTACTAGCTCAGATACCTTGCTTTCAGGAAGCCAGAAGCTCC
CTGACCCTCTCAGTACTTAGAGAAGCCAGAAGCCATGCCTCAAGTGCTGGCTGCAGCCCGAGTC
TCTTGACAGGTCTTTCTATTTGGTTGGTTTCTTGTTTGTTTTTAATTGGGGGATAGAATAGACA
AAACAGGGAAAAAACACTAAGATTTTATTAAAAATAAACCATTTTAAAGTTGCAGTCCTCAA

hide sequence

RefSeq Acc Id:

XM_008767261 ⟹ XP_008765483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,060,265 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,612,550 - 88,678,935 (-)	NCBI
Rnor_6.0	9	95,076,755 - 95,142,991 (-)	NCBI

Sequence:

show sequence

GGGGCCGGGGAACGGGACGCAGGGAGGGAGGAGGGCCCCGTAGAGACGACCCCGGCGGCCTGGG
GCGAAACGCCGGGCCTCTGTTGGCGGCGCGTCAAGGGTCGGGCCGCGGGGACGCGCGCCCGTCG
CGCTCCTGGGCCCTGGGCGGCTTGGTGGGCGGGAAGGCCTCTGGAATGGCATGACGGGAATCCA
GCTCGCGAGCTCGAGGCCTGACTCCCGAGTTCCATTTCTTGAGCTTTTCTTCAGAGGACTGTGT
TGGAAAGGAAAAGAACTGCATTTTGGGCGTTCCTGTCTCTTAAAAGAGAGTCCTCAGCGTTTTT
ACCTCAAATGCCCCTTAACCACACAAACAGAGCAGACTCCCGCAGGGTCCACAGGTCTGGGGTT
GGATTCCTGGGTATGTGTTGGAAGGCCACTGGACTCCATAGCTCTAATGACCAGTTTTTCTTTC
TTAAGGTACTTACGCCAGGTTCTCTAGTTTGGGGCCAAAGTGCAGAAACTACTGTCACGAAGAT
TAATGTGATAGGTTTAAGTCCCTGAAACGCTGTGATCTGGTACAGTATGTGAAGGGATGGGAGA
AGCTGAGATTTCATAATTGATGAAGGCTGCTGTCAACTAACACTGTCTGTCCCCCTCTCCCTCT
CTCCCTCCTTGTCTCCTCATTTAGTGATGTGGAATCCAAGAATAGTTATCAGTTCTTGTGAGCC
AAGCCCTTTGTACTCAGTAACCTTTCTTTTGTCATGTGATTGGTTAAAGTACCCTATAAAACAT
GCACGGCCCCATTTTACATAGAAGTAAATGTTAGCTAAATAACTTGTCCAGGATCACACAGGTT
AATCAGCACCCCGTGTAAGTAGGAAGGATAAGTCGGGTCTCCGCTGTCTCCTAAACACAGACTA
CTGTATTTTCTGAAGGATGATTTTTAATAAAACAACTTCGCTCGAAAGATAAGAAAAACTTGGG
GGTGGAGGTTCATTTCAAGAATAAAGACATTTATGTAACATGTCGCTTTCTTTAAAGGATAGCG
TTTAGTTCCACAATGTTTGGGAACCTATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGT
ATGGAAGCGGGAAGAAATTAAAGACTAAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAA
GTTAAGTGGAATCAGAAATCAGGGTGGAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCAC
TTCACACCTGAATTCAGAGAAGCTTTATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGG
ATAAGGATAAACCCGAAGCAAAGGTCCGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCA
GCTTCTGCTCGTGGACCAGGAGGCTGCATCCACCACAGACCTCACTGACAGCTTCGGGTGGACC
AGCGATGAGGAAATGAGACAACACGATGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGG
AAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATGGCACCATTGT
GAACCAGATTGTTTGCAAAGAGTGTAAGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTG
ACAGTAGCAGTCAAAAACGTATCTGGTTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGG
AAATTTTCGACTATGATAACTTGTACCACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAA
GTCTGCCAAATTACGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGAT
TTTGTGAAATGTGAACGCTACAAGGATACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCA
AGCCTTTCTGTGAACAGAGTGACATGGATGACATGGAATATATGTATGACCTCTTCTCTGTCAT
TATCCACAAAGGTGGCTGCTATGGAGGTCATTACCATGTGTACATTAAAGACGTTGATCATCTC
GGCAACTGGCAATGTCAAGAGGAGATAAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATG
AAGAAGAGACTGATGATCCACTGGTGGTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCA
AATTCCTGTTGATCAGCTGGGCCAGAAACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAG
TACAGGAAACAGCATGGACCACTGCGAAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCA
GCACAGATGAAAGTACAGTCAGTCTCCAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACA
GAGCCATGAACAGATTGCACACACACTTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGT
TGCCCACACTGGTTTGACATCAATGATTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGC
AGCAGTTCCAGGGTAAAGAAAGTGCCTACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACC
CTCTGAAGCTCAAGCCAATCCAAGATACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCA
GCCAACGTTCTCCTGCAGACGAGAAGGGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGC
ATCTCCACTTGGGTCCTCACTACCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGAC
TGAGAGCGTGTGGGACTTAACATTTGATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATA
TTTCAGCTATTGGAGTTCTGGGAAGGAGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAG
GACTTCATGTGTACCATACCCTCGATGGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGA
TGAGGAAGACATCTTTGTATGGAATGGGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTT
GACTGTGAACCTCTGCTGTTACACATTCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTG
AGCAGTTGGTGGAGTCGCCACATGTCTTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGC
CTTGGGCACCCCAGAAGGCGTCCTCCTCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGG
ACTGCTATTCCCCAAGAAGACATGAAGAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCT
TAATTTTGGTTCAGGATTCAGACAGTGATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGAC
CAGCAGCATGAATGAGCTCAACTGGCTCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAG
AAGCAGGTTCAGATAGCCGTGACCATGCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAA
AGGAATTAAAATTAATGAAGGAACTAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGG
GAGGCTCCTTTGTCCAGTACCAGATACCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGC
TCCGTGGGACTGTGTCTGGGGAAAGCACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGG
GGACTGACATTCACCCTGGGGCAGAGCTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGA
TTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATG
GATTGGTGCTATGAAGCTGGTGAGCCTTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGA
TATGTTCTGGGGACACTTTGCTGTTAACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGAT
GCCCATCTGGTGGTACCAGCCTGAAAGGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAAC
TGTGCCTTTTCTCAAGGTAGCAGCTGGGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGC
CTGCAGAAGTCTCTCTCCTCTACTTGGGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGA
ACTGAAGTCTAAGGCCTTGGCCTTGCCTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTG
CTTAGAGTCTGGACAGTGGAGAGCAAGCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGC
TCAAGGAGTACAGACTGGGCCGGAGAACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGA
CTTGGGTGTCTGCTTTGTTCTTCTATAGCCCCCGGGATGTACTGCTGAGGACACAGCTACGCAT
CCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGACACCACCAGAG

hide sequence

RefSeq Acc Id:

XM_039083725 ⟹ XP_038939653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,754 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI

RefSeq Acc Id:

XM_039083726 ⟹ XP_038939654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,126,754 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,940 (-)	NCBI

RefSeq Acc Id:

XM_039083727 ⟹ XP_038939655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,125,584 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083728 ⟹ XP_038939656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,116,297 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,668,507 (-)	NCBI

RefSeq Acc Id:

XM_039083729 ⟹ XP_038939657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,071,424 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,623,417 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083730 ⟹ XP_038939658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,089,978 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,643,483 (-)	NCBI

RefSeq Acc Id:

XM_039083732 ⟹ XP_038939660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,101,385 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,653,602 (-)	NCBI

RefSeq Acc Id:

XM_039083733 ⟹ XP_038939661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,102,578 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,654,767 (-)	NCBI

RefSeq Acc Id:

XM_039083734 ⟹ XP_038939662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,087,299 - 96,125,584 (-)	NCBI
mRatBN7.2	9	88,639,487 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XM_039083735 ⟹ XP_038939663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,092,392 (-)	NCBI
mRatBN7.2	9	88,607,920 - 88,654,768 (-)	NCBI

RefSeq Acc Id:

XM_063267293 ⟹ XP_063123363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,058,891 - 96,126,766 (-)	NCBI

RefSeq Acc Id:

XM_063267294 ⟹ XP_063123364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,070,980 - 96,126,766 (-)	NCBI

RefSeq Acc Id:

XM_063267295 ⟹ XP_063123365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,084,660 (-)	NCBI

RefSeq Acc Id:

XM_063267296 ⟹ XP_063123366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,055,741 - 96,084,681 (-)	NCBI

RefSeq Acc Id:

XR_001839663

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,061,769 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,612,353 - 88,678,935 (-)	NCBI
Rnor_6.0	9	95,076,535 - 95,142,991 (-)	NCBI

Sequence:

show sequence

GGGGCCGGGGAACGGGACGCAGGGAGGGAGGAGGGCCCCGTAGAGACGACCCCGGCGGCCTGGG
GCGAAACGCCGGGCCTCTGTTGGCGGCGCGTCAAGGGTCGGGCCGCGGGGACGCGCGCCCGTCG
CGCTCCTGGGCCCTGGGCGGCTTGGTGGGCGGGAAGGCCTCTGGAATGGCATGACGGGAATCCA
GCTCGCGAGCTCGAGGCCTGACTCCCGAGTTCCATTTCTTGAGCTTTTCTTCAGAGGACTGTGT
TGGAAAGGAAAAGAACTGCATTTTGGGCGTTCCTGTCTCTTAAAAGAGAGTCCTCAGCGTTTTT
ACCTCAAATGCCCCTTAACCACACAAACAGAGCAGACTCCCGCAGGGTCCACAGGTCTGGGGTT
GGATTCCTGGGTATGTGTTGGAAGGCCACTGGACTCCATAGCTCTAATGACCAGTTTTTCTTTC
TTAAGGTACTTACGCCAGGTTCTCTAGTTTGGGGCCAAAGTGCAGAAACTACTGTCACGAAGAT
TAATGTGATAGGTTTAAGTCCCTGAAACGCTGTGATCTGGTACAGTATGTGAAGGGATGGGAGA
AGCTGAGATTTCATAATTGATGAAGGCTGCTGTCAACTAACACTGTCTGTCCCCCTCTCCCTCT
CTCCCTCCTTGTCTCCTCATTTAGTGATGTGGAATCCAAGAATAGTTATCAGTTCTTGTGAGCC
AAGCCCTTTGTACTCAGTAACCTTTCTTTTGTCATGTGATTGGTTAAAGTACCCTATAAAACAT
GCACGGCCCCATTTTACATAGAAGTAAATGTTAGCTAAATAACTTGTCCAGGATCACACAGGTT
AATCAGCACCCCGTGTAAGTAGGAAGGATAAGTCGGGTCTCCGCTGTCTCCTAAACACAGACTA
CTGTATTTTCTGAAGGATGATTTTTAATAAAACAACTTCGCTCGAAAGATAAGAAAAACTTGGG
GGTGGAGGTTCATTTCAAGAATAAAGACATTTATGTAACATGTCGCTTTCTTTAAAGGATAGCG
TTTAGTTCCACAATGTTTGGGAACCTATTTGAAGAGGACTATTCCAGTGTGTCAAGTAGTCAGT
ATGGAAGCGGGAAGAAATTAAAGACTAAAGGTTTGGAGCCACCTGCCCCTAGAGAATTCACCAA
GTTAAGTGGAATCAGAAATCAGGGTGGAACCTGTTACCTCAGTTCCCTGCTTCAGACACTTCAC
TTCACACCTGAATTCAGAGAAGCTTTATTTTCTCTTGGTCCGGAAGAGCTCGGTTCTCTAGAGG
ATAAGGATAAACCCGAAGCAAAGGTCCGGATCATACCTTTGCAGTTGCAGCGCTTGTTTGCCCA
GCTTCTGCTCGTGGACCAGGAGGCTGCATCCACCACAGACCTCACTGACAGCTTCGGGTGGACC
AGCGATGAGGAAATGAGACAACACGATGTGCAGGAACTCAACCGAATTCTCTTCAGTGCTTTGG
AAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATGGCACCATTGT
GAACCAGATTGTTTGCAAAGAGTGTAAGAATGTCAGTGAGAGGCAGGAAGACTTCTTGGATTTG
ACAGTAGCAGTCAAAAACGTATCTGGTTTAGAAGATGCACTCTGGAACATGTACGTGGAGGAGG
AAATTTTCGACTATGATAACTTGTACCACTGTGGAACCTGTGACCGGCTGGTGAAAGCAGCAAA
GTCTGCCAAATTACGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGAT
TTTGTGAAATGTGAACGCTACAAGGATACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCA
AGCCTTTCTGTGAACAGAGTGACATGGATGACATGGAATATATGTATGACCTCTTCTCTGTCAT
TATCCACAAAGGTGGCTGCTATGGAGGTCATTACCATGTGTACATTAAAGACGTTGATCATCTC
GGCAACTGGCAATGTCAAGAGGAGATAAGTGATTCAGCTGTGAATTTGAAAGCTCCTCAGAATG
AAGAAGAGACTGATGATCCACTGGTGGTTCTAAAAGCAATCTTATTGCAGGAGGAGGCCAATCA
AATTCCTGTTGATCAGCTGGGCCAGAAACTCTTGATAAAAACAGGAATATCTTGGAACAAGAAG
TACAGGAAACAGCATGGACCACTGCGAAAGTTCTTACGGCTCCATCCTCAGGTATTTCTGCTCA
GCACAGATGAAAGTACAGTCAGTCTCCAGAGAAGCCATTTTCCCCAGGTCCCGTCTGATCCACA
GAGCCATGAACAGATTGCACACACACTTGCTTCAGAACCCCCAGGCTTAAGGGATAACATCAGT
TGCCCACACTGGTTTGACATCAATGATTCCAAAGTCCAGCCAATCAAAGAGAAAGATATCATGC
AGCAGTTCCAGGGTAAAGAAAGTGCCTACATGCTATTTTATCGGAAAGCCACGCTGCAGAGACC
CTCTGAAGCTCAAGCCAATCCAAGATACAGAGTTCCCTGTCATTTACTAAAGGAAATGGATGCA
GCCAACGTTCTCCTGCAGACGAGAAGGGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGC
ATCTCCACTTGGGTCCTCACTACCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTCAGAC
TGAGAGCGTGTGGGACTTAACATTTGATAAAAGAAAAACTGTAGGAGATCTCCGTCAGTCAATA
TTTCAGCTATTGGAGTTCTGGGAAGGAGACATGGTTCTCAGTGTTGCGAAGCGTGTGCCAGCAG
GACTTCATGTGTACCATACCCTCGATGGAGATGAACTGACACTGGGTGAAGCTGAAATCGCTGA
TGAGGAAGACATCTTTGTATGGAATGGGGTGGAGGTTGGTGGAGTCCAAATTCAGACTGGTTTT
GACTGTGAACCTCTGCTGTTACACATTCTTCATCTAGAGTTAAGTGGGGAAGGCTCAGAGTGTG
AGCAGTTGGTGGAGTCGCCACATGTCTTTCCCGCTAATGCCGAAGTGGGCACTGTGTTCACAGC
CTTGGGCACCCCAGAAGGCGTCCTCCTCATGAACAGTGTGGAATCTACAGATGAAGAGTGCTGG
ACTGCTATTCCCCAAGAAGACATGAAGAAGACATTCAGAGAGCAAGGTCTCAGAAATGGAAGCT
TAATTTTGGTTCAGGATTCAGACAGTGATGATAACAGTCTGTTGTCCAAACAAGGGAGATGGAC
CAGCAGCATGAATGAGCTCAACTGGCTCCAAGTGAAAAACTTCTGCCAGTCAGGATCTGAAGAG
AAGCAGGTTCAGATAGCCGTGACCATGCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAA
AGGAATTAAAATTAATGAAGGAACTAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGG
GAGGCTCCTTTGTCCAGTACCAGATACCAGCACTTTGGAGGAGGCAGAGGTGAAGATGGGGAGC
TCCGTGGGACTGTGTCTGGGGAAAGCACCAACTTCCTCTCAGCTGTTCCTGTTTTTTGCTCTGG
GGACTGACATTCACCCTGGGGCAGAGCTGGAAGTCATAGTAGAAGAAACACTCTCAGTGAGAGA
TTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATGTGGCACTTAAGGAAAATG
GATTGGTGCTATGAAGCTGGTGAGCCTTTATGTGAAGAAGATGCAACATTGAAAGAGCTTATGA
TATGTTCTGGGGACACTTTGCTGTTAACTGAAGGAAAACTGCCTTCTCCGGGGCACTTGAAGAT
GCCCATCTGGTGGTACCAGCCTGAAAGGCTGTCAGGACACCGTGAGAGCTGGGACCACTTAAAC
TGTGCCTTTTCTCAAGGTAGCAGCTGGGGAGCTGCTCCCACCCAAGGTGCTCCTGGCCCTGAGC
CTGCAGAAGTCTCTCTCCTCTACTTGGGAGATATGGAGATCTCAGAAGAGGCCACTTTGGCAGA
ACTGAAGTCTAAGTCTGTCCTGATATGGCATGTGTTATATGCCATGGTCAGGGGCCTTGGCCTT
GCCTTCTGTGTTGAAGCTCGCCGTCCAGTCCACAAGCCTGCTTAGAGTCTGGACAGTGGAGAGC
AAGCGCCCCAGCAGGCTCTTGCGCACTGGTTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGA
GAACTGAGCTCTGCTTAGAGCTCCTTCAAAAGGAGGAGGACTTGGGCCCCCGGGATGTACTGCT
GAGGACACAGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCCAAAGACCTAGTATGGGAC
ACCACCAGAGGATGGACTGCTGGCTCCTTGAGGCAGAGAGTGGCTGACTTCTATTCTCTTCCTG
TGGAGAAAATTGAAATTGCCAAATATTTTCCTGAAAAGTTTGAGTGGCTTCCAATATCTAGCTG
GAATCAGCAAATTGCCAAAA

hide sequence

RefSeq Acc Id:

XR_005488916

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,075,103 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,627,291 - 88,678,935 (-)	NCBI

RefSeq Acc Id:

XR_005488917

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	96,075,141 - 96,126,766 (-)	NCBI
mRatBN7.2	9	88,627,323 - 88,678,935 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128357	(Get FASTA)	NCBI Sequence Viewer
	XP_008765483	(Get FASTA)	NCBI Sequence Viewer
	XP_038939653	(Get FASTA)	NCBI Sequence Viewer
	XP_038939654	(Get FASTA)	NCBI Sequence Viewer
	XP_038939655	(Get FASTA)	NCBI Sequence Viewer
	XP_038939656	(Get FASTA)	NCBI Sequence Viewer
	XP_038939657	(Get FASTA)	NCBI Sequence Viewer
	XP_038939658	(Get FASTA)	NCBI Sequence Viewer
	XP_038939660	(Get FASTA)	NCBI Sequence Viewer
	XP_038939661	(Get FASTA)	NCBI Sequence Viewer
	XP_038939662	(Get FASTA)	NCBI Sequence Viewer
	XP_038939663	(Get FASTA)	NCBI Sequence Viewer
	XP_063123363	(Get FASTA)	NCBI Sequence Viewer
	XP_063123364	(Get FASTA)	NCBI Sequence Viewer
	XP_063123365	(Get FASTA)	NCBI Sequence Viewer
	XP_063123366	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ91027	(Get FASTA)	NCBI Sequence Viewer
	EDL92114	(Get FASTA)	NCBI Sequence Viewer
	EDL92115	(Get FASTA)	NCBI Sequence Viewer
	EDL92116	(Get FASTA)	NCBI Sequence Viewer
	EDL92117	(Get FASTA)	NCBI Sequence Viewer
	EDL92118	(Get FASTA)	NCBI Sequence Viewer
	EDL92119	(Get FASTA)	NCBI Sequence Viewer
	EDL92120	(Get FASTA)	NCBI Sequence Viewer
	EDL92121	(Get FASTA)	NCBI Sequence Viewer
	EDL92122	(Get FASTA)	NCBI Sequence Viewer
	EDL92123	(Get FASTA)	NCBI Sequence Viewer
	EDL92124	(Get FASTA)	NCBI Sequence Viewer
	EDL92125	(Get FASTA)	NCBI Sequence Viewer
	EDL92126	(Get FASTA)	NCBI Sequence Viewer
	EDL92127	(Get FASTA)	NCBI Sequence Viewer
	EDL92128	(Get FASTA)	NCBI Sequence Viewer
	EDL92129	(Get FASTA)	NCBI Sequence Viewer
	EDL92130	(Get FASTA)	NCBI Sequence Viewer
	EDL92131	(Get FASTA)	NCBI Sequence Viewer
	EDL92132	(Get FASTA)	NCBI Sequence Viewer
	EDL92133	(Get FASTA)	NCBI Sequence Viewer
	EDL92134	(Get FASTA)	NCBI Sequence Viewer
	EDL92135	(Get FASTA)	NCBI Sequence Viewer
	EDL92136	(Get FASTA)	NCBI Sequence Viewer
	EDL92137	(Get FASTA)	NCBI Sequence Viewer
	EDL92138	(Get FASTA)	NCBI Sequence Viewer
	EDL92139	(Get FASTA)	NCBI Sequence Viewer
	EDL92140	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059419.3
	ENSRNOP00000060806
	ENSRNOP00000060806.1
	ENSRNOP00000064567.3
	ENSRNOP00000074830.3
	ENSRNOP00000112752.1

RefSeq Acc Id:

NP_001128357 ⟸ NM_001134885

- UniProtKB:

D3ZL95 (UniProtKB/TrEMBL), A6JQE7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLHFTPE
FREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDSFGWTSDEE
MRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAV
KNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKC
ERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQ
CQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQIPVDQLGQKLLIKTGISWNKKYRKQ
HGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPSDPQSHEQIAHTLASEPPGLRDNISCPHW
FDINDSKVQPIKEKDIMQQFQGKESAYMLFYRKATLQRPSEAQANPRYRVPCHLLKEMDAANVL
LQTRRAECDSANSTFELHLHLGPHYRFFNGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLL
EFWEGDMVLSVAKRVPAGLHVYHTLDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEP
LLLHILHLELSGEGSECEQLVESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIP
QEDMKKTFREQGLRNGSLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQ
IAVTMHTVVFDIRIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGL
CLGKAPTSSQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCY
EAGEPLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFS
QGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSLLRVW
TVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGPRDVLLRTQLRIPGERAYSLAKD
LVWDTTRGWTAGSLRQRVADFYSLPVEKIEIAKYFPEKFEWLPISSWNQQIAKRKKKKNQDTLQ
GGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQKRTALEKKKSREVQRTQSSDVFSNSGM
PTRPRGPEASLSIHVASFR

hide sequence

RefSeq Acc Id:	XP_008765483 ⟸ XM_008767261
- Peptide Label:	isoform X4
- UniProtKB:	A6JQE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFGNLFEEDYSSVSSSQYGSGKKLKTKGLEPPAPREFTKLSGIRNQGGTCYLSSLLQTLHFTPE FREALFSLGPEELGSLEDKDKPEAKVRIIPLQLQRLFAQLLLVDQEAASTTDLTDSFGWTSDEE MRQHDVQELNRILFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAV KNVSGLEDALWNMYVEEEIFDYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKC ERYKDTSCYTFPLRINLKPFCEQSDMDDMEYMYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQ CQEEISDSAVNLKAPQNEEETDDPLVVLKAILLQEEANQIPVDQLGQKLLIKTGISWNKKYRKQ HGPLRKFLRLHPQVFLLSTDESTVSLQRSHFPQVPSDPQSHEQIAHTLASEPPGLRDNISCPHW FDINDSKVQPIKEKDIMQQFQGKESAYMLFYRKATLQRPSEAQANPRYRVPCHLLKEMDAANVL LQTRRAECDSANSTFELHLHLGPHYRFFNGALHPAVSQTESVWDLTFDKRKTVGDLRQSIFQLL EFWEGDMVLSVAKRVPAGLHVYHTLDGDELTLGEAEIADEEDIFVWNGVEVGGVQIQTGFDCEP LLLHILHLELSGEGSECEQLVESPHVFPANAEVGTVFTALGTPEGVLLMNSVESTDEECWTAIP QEDMKKTFREQGLRNGSLILVQDSDSDDNSLLSKQGRWTSSMNELNWLQVKNFCQSGSEEKQVQ IAVTMHTVVFDIRIKAIKELKLMKELAENSCLRPIDRNGRLLCPVPDTSTLEEAEVKMGSSVGL CLGKAPTSSQLFLFFALGTDIHPGAELEVIVEETLSVRDCLKIMLEKSGQQGEMWHLRKMDWCY EAGEPLCEEDATLKELMICSGDTLLLTEGKLPSPGHLKMPIWWYQPERLSGHRESWDHLNCAFS QGSSWGAAPTQGAPGPEPAEVSLLYLGDMEISEEATLAELKSKALALPSVLKLAVQSTSLLRVW TVESKRPSRLLRTGWRQLKEYRLGRRTELCLELLQKEEDLGVCFVLL hide sequence

Ensembl Acc Id:

ENSRNOP00000064567 ⟸ ENSRNOT00000070819

Ensembl Acc Id:

ENSRNOP00000074830 ⟸ ENSRNOT00000085325

Ensembl Acc Id:

ENSRNOP00000060806 ⟸ ENSRNOT00000064171

RefSeq Acc Id:	XP_038939654 ⟸ XM_039083726
- Peptide Label:	isoform X1
- UniProtKB:	D3ZL95 (UniProtKB/TrEMBL), A6JQE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939653 ⟸ XM_039083725
- Peptide Label:	isoform X1
- UniProtKB:	D3ZL95 (UniProtKB/TrEMBL), A6JQE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939655 ⟸ XM_039083727
- Peptide Label:	isoform X2
- UniProtKB:	A6JQE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939656 ⟸ XM_039083728
- Peptide Label:	isoform X5
- UniProtKB:	A6JQF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939663 ⟸ XM_039083735
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038939661 ⟸ XM_039083733
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038939660 ⟸ XM_039083732
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038939658 ⟸ XM_039083730
- Peptide Label:	isoform X8
- UniProtKB:	M0R5A3 (UniProtKB/TrEMBL), Q6TUH3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939657 ⟸ XM_039083729
- Peptide Label:	isoform X6
- UniProtKB:	A6JQG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939662 ⟸ XM_039083734
- Peptide Label:	isoform X11
- UniProtKB:	A6JQH0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000059419 ⟸ ENSRNOT00000064642

RefSeq Acc Id:	XP_063123366 ⟸ XM_063267296
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063123365 ⟸ XM_063267295
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063123363 ⟸ XM_063267293
- Peptide Label:	isoform X3
- UniProtKB:	A6JQE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123364 ⟸ XM_063267294
- Peptide Label:	isoform X7
- UniProtKB:	A6JQG9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112752 ⟸ ENSRNOT00000126955

Protein Domains

Alcohol dehydrogenase-like C-terminal Alcohol dehydrogenase-like N-terminal USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A2R6-F1-model_v2	AlphaFold	D4A2R6	1-997	view protein structure
AF-D3ZL95-F1-model_v2	AlphaFold	D3ZL95	1-1235	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696841

Promoter ID:

EPDNEW_R7365

Type:

multiple initiation site

Name:

Usp40_1

Description:

ubiquitin specific peptidase 40

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	95,143,096 - 95,143,156	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309613	AgrOrtholog
BioCyc Gene	G2FUF-26830	BioCyc
Ensembl Genes	ENSRNOG00000018395	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000049962	Ensembl
Ensembl Transcript	ENSRNOT00000064171	ENTREZGENE
	ENSRNOT00000064171.4	UniProtKB/TrEMBL
	ENSRNOT00000064642.5	UniProtKB/TrEMBL
	ENSRNOT00000070819.4	UniProtKB/TrEMBL
	ENSRNOT00000085325.3	UniProtKB/TrEMBL
	ENSRNOT00000126955.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
	Medium-chain alcohol dehydrogenases, catalytic domain	UniProtKB/TrEMBL
	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	ADH_C	UniProtKB/TrEMBL
	ADH_GroES-like	UniProtKB/TrEMBL
	GroES-like	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	SDH-like	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
KEGG Report	rno:316599	UniProtKB/TrEMBL
NCBI Gene	316599	ENTREZGENE
PANTHER	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 40	UniProtKB/TrEMBL
Pfam	ADH_N	UniProtKB/TrEMBL
	ADH_zinc_N	UniProtKB/TrEMBL
	UBL_USP40	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
PhenoGen	Usp40	PhenoGen
PROSITE	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018395	RatGTEx
	ENSRNOG00000049962	RatGTEx
Superfamily-SCOP	GroES_like	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	A0A0G2K923_RAT	UniProtKB/TrEMBL
	A0A8J8XW61_RAT	UniProtKB/TrEMBL
	A0ABK0M9M7_RAT	UniProtKB/TrEMBL
	A6JQE7	ENTREZGENE, UniProtKB/TrEMBL
	A6JQE8_RAT	UniProtKB/TrEMBL
	A6JQE9_RAT	UniProtKB/TrEMBL
	A6JQF0	ENTREZGENE, UniProtKB/TrEMBL
	A6JQF2_RAT	UniProtKB/TrEMBL
	A6JQF6_RAT	UniProtKB/TrEMBL
	A6JQF9_RAT	UniProtKB/TrEMBL
	A6JQG0_RAT	UniProtKB/TrEMBL
	A6JQG8_RAT	UniProtKB/TrEMBL
	A6JQG9	ENTREZGENE, UniProtKB/TrEMBL
	A6JQH0	ENTREZGENE, UniProtKB/TrEMBL
	A6JQH1_RAT	UniProtKB/TrEMBL
	A6JQH2_RAT	UniProtKB/TrEMBL
	A6JQH3_RAT	UniProtKB/TrEMBL
	D3ZL95	ENTREZGENE, UniProtKB/TrEMBL
	D4A2R6_RAT	UniProtKB/TrEMBL
	M0R5A3	ENTREZGENE
	Q6TUH3	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	M0R5A3	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Usp40	ubiquitin specific peptidase 40	LOC100911860	ubiquitin carboxyl-terminal hydrolase 40-like	Data merged from RGD:6490066	737654	PROVISIONAL
2012-07-05	LOC100911860	ubiquitin carboxyl-terminal hydrolase 40-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Usp40	ubiquitin specific peptidase 40	Usp40	ubiquitin specific protease 40	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Usp40	ubiquitin specific protease 40	Usp40_predicted	ubiquitin specific protease 40 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Usp40_predicted	ubiquitin specific protease 40 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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