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Gene: Mindy3 (MINDY lysine 48 deubiquitinase 3) Rattus norvegicus

Analyze

Symbol:

Mindy3

Name:

MINDY lysine 48 deubiquitinase 3

RGD ID:

1309605

Description:

Predicted to enable K48-linked deubiquitinase activity and cysteine-type deubiquitinase activity. Predicted to be involved in apoptotic process; protein K48-linked deubiquitination; and proteolysis. Predicted to be located in nuclear membrane and nucleoplasm. Orthologous to human MINDY3 (MINDY lysine 48 deubiquitinase 3); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam188a; family with sequence similarity 188, member A; LOC291320; RGD1309605; similar to RIKEN cDNA 2310047O13; ubiquitin carboxyl-terminal hydrolase MINDY-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CGRRF1 (cell growth regulator with ring finger domain 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7332	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mindy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mindy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,454,404 - 80,532,999 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	80,454,405 - 80,532,960 (-)	Ensembl				GRCr8
mRatBN7.2	17	75,545,286 - 75,623,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	79,004,991 - 79,083,646 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,840,328 - 82,918,988 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,888,261 - 76,966,923 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	74,921,510 - 74,998,724 (-)	NCBI		Celera
RGSC_v3.1	17	86,713,857 - 86,956,893 (-)	NCBI
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-nitrosodimethylamine (EXP)

nefazodone (EXP)

paracetamol (EXP)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

protein K48-linked deubiquitination (IEA)

proteolysis (IEA)

Cellular Component

nuclear membrane (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

cysteine-type deubiquitinase activity (IEA,ISO)

cysteine-type peptidase activity (IEA)

hydrolase activity (IEA)

K48-linked deubiquitinase activity (IBA,IEA,ISO)

peptidase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:27292798

Genomics

Comparative Map Data

Mindy3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,454,404 - 80,532,999 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	80,454,405 - 80,532,960 (-)	Ensembl				GRCr8
mRatBN7.2	17	75,545,286 - 75,623,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	79,004,991 - 79,083,646 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,840,328 - 82,918,988 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,888,261 - 76,966,923 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	74,921,510 - 74,998,724 (-)	NCBI		Celera
RGSC_v3.1	17	86,713,857 - 86,956,893 (-)	NCBI
Cytogenetic Map	17	q12.3	NCBI

MINDY3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	15,778,174 - 15,860,507 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	15,778,170 - 15,860,528 (-)	Ensembl			hg38	GRCh38
GRCh37	10	15,820,173 - 15,902,506 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	15,860,181 - 15,942,525 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	15,860,180 - 15,942,525	NCBI
Celera	10	15,753,418 - 15,835,764 (-)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	15,732,561 - 15,814,922 (-)	NCBI		HuRef
CHM1_1	10	15,820,225 - 15,902,566 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	15,796,178 - 15,878,518 (-)	NCBI		T2T-CHM13v2.0

Mindy3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	12,352,074 - 12,424,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	12,352,074 - 12,424,281 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	12,347,263 - 12,419,489 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	12,347,263 - 12,419,470 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	12,268,891 - 12,341,087 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	12,265,117 - 12,337,313 (-)	NCBI		MGSCv36	mm8
Celera	2	12,260,745 - 12,332,603 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	9.27	NCBI

Mindy3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	11,805,080 - 11,890,103 (+)	Ensembl
ChiLan1.0	NW_004955429	11,805,205 - 11,890,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

MINDY3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	28,627,068 - 28,709,225 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	28,632,395 - 28,714,551 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	16,101,605 - 16,183,746 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	16,377,064 - 16,459,134 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	16,377,064 - 16,459,135 (-)	Ensembl			panPan2	panpan1.1

MINDY3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	20,948,946 - 21,014,938 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	20,865,946 - 21,014,429 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	18,041,164 - 18,125,213 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	21,223,797 - 21,307,880 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	21,223,812 - 21,307,880 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	18,430,539 - 18,514,602 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	19,264,996 - 19,349,027 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	19,890,285 - 19,974,351 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mindy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	6,205,442 - 6,296,345 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936574	6,205,419 - 6,296,385 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MINDY3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	45,980,111 - 46,062,700 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	45,980,088 - 46,062,700 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	50,676,092 - 50,758,110 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MINDY3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	15,738,104 - 15,820,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	15,737,625 - 15,820,266 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	21,328,221 - 21,410,447 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mindy3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	11,778,201 - 11,863,318 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624796	11,778,932 - 11,862,882 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mindy3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	21,148,414 - 21,173,409 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mindy3
403 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	270
Count of miRNA genes:	180
Interacting mature miRNAs:	207
Transcripts:	ENSRNOT00000022986
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

RH129970

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	75,545,368 - 75,545,550 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	79,720,617 - 79,720,798	NCBI	Rnor6.0
Rnor_5.0	17	81,349,030 - 81,349,211	UniSTS	Rnor5.0
RGSC_v3.4	17	86,693,578 - 86,693,759	UniSTS	RGSC3.4
Celera	17	74,921,592 - 74,921,773	UniSTS
RH 3.4 Map	17	766.0	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022986 ⟹ ENSRNOP00000022986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	80,454,405 - 80,532,960 (-)	Ensembl
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154944 ⟹ ENSRNOP00000107442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	80,454,405 - 80,532,960 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167583 ⟹ ENSRNOP00000112384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	80,454,405 - 80,532,960 (-)	Ensembl

RefSeq Acc Id:

NM_001106122 ⟹ NP_001099592

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,405 - 80,532,960 (-)	NCBI
mRatBN7.2	17	75,545,287 - 75,623,846 (-)	NCBI
Rnor_6.0	17	79,720,535 - 79,798,435 (-)	NCBI
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	RGD
Celera	17	74,921,510 - 74,998,724 (-)	RGD

Sequence:

show sequence

TCCTAGTTGCGGCTTCGCCCGGCTTGACAGGCGCTGTCTCTGCGGGCACCGAGCTACACTCATC
CCGCTCGGCCTCCCAATCGCGCCTCGGCCGCCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCC
TTCCCTATGTTCCGGGACCGGAGTACGGGAAGCAAAGACCCTCTTGTCCAGTCCCCATCATGTC
CGAAGTGACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGAC
ACCATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAGTGACTCAGAGGGATCTGCATTAGAGC
AGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCT
GTTTTCCTCCGAGAAGTCGTCCTGGCGGGATTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGT
CATACCTTGTGTGATATTTTAGAAAGTGCTTGTGACAGCTCTGGATCATACTGCATGGTTTCAT
GGTTGAGAGGAAGGACGACTGAGGACGCCGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTG
CCAAGTGGGACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTA
ATTCAAAAAAGATCATTCAGAACTGTATCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAA
TGTGGGGAAACAAATTTGGAGTCTTGCTTTTTCTCTATTCTGTATTACTGACAAAGGGCATTGA
AAACATAAAGAATTCAATTGAAGATGCAAACGAGCCTTTGATAGACCCTGTGTACGGGCATGGC
AGCCAAAGCTTAATAAACCTCCTCCTGACGGGGCACGCGGTCTCTAACGTGTGGGATGGCGATA
GAGAGTGCTCAGGAATGCAACTTCTCGGTATCCATGAACAAGCAACTGTAGGATTCTTAACACT
AATGGAAGCTTTACGCTATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCCCTATTTGG
ATTGTTGGCAGCGAAACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGCCCCTG
AAGCGCCTTCGGAACAAGCCAGAAGAGTTTTTCAGACCTATGACCCAGAAGATAATGGATTCAT
AGCCGACACACTTCTAGAGGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATATA
AATCTCATGAAGAACAAATTGGATCCAGAAGGATTAGGAATCATATTGTTGGGTCCATTTCTTC
AAGAATTTTTTCCTGACCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGG
ATTGAAGCAGTCAAATTATAATGAAAAGGTAATGTATGTGGAAGGGACTGCAGTGGTTATGGGT
TTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGC
CGTACATTGAGTTACTGTGGACCACAGACCGCTCTCCTTCACTCAACTGAGTTGCCCGAGTATT
AGTAAGGAAGATTGTCAAACCCGGTGTTGAAAGGGGGATTCATGACTGGCTACATGAAGCTAAA
CGCTGGTATTGTTGATTAACTGTAAATAACAATTAAAAACACATTTTCAGTGTTTAAGATATGT
TTAAATTATTTGTTCTAAAGCTTTATGTTAAAGGTTATCCTATTTTAATCCTTTCTGTGAAATT
TACTAACAAAATTAAGCTTTAATTAAAGTTCATCTCTTCTGCAGTCAGGTAATTGGTCGTTACC
AGATTATAAACACAATATTATAGCATTTTTATAATGACATCAGTCACAAAAACCTGCCTGGAGT
ATCATTCCATTCATTTCATTTTACTGTAGTATTTTTAGCAGCCTCCATACCAAAATGCAAAGGT
TAATTTTTGTTAATTTTTTTTTTCATTGCTTAAATCTGTTTTTCCATCACAAATACTAATAAAT
CACAAATTATTGGCCCTGATCCTTTGGTAACAAATTTGACACTAGCATGTTTACAAACAAATAA
GAAAGGATAATATGTGGGAGCTTCTTTGTGTTCACAGGTGCACAGGGATGTGGTTTTACAGTGA
TGGGGGAAGAATGTGTTGGCTGGGTGGTCTTACACTGTCGCTGTGACTGTACCGCTCAATACAC
TTCTCCACCTTCATTCCTACAAGCCAGCTCTCTTGTATGTTTATAAGCGTGGTAATGCATGAAA
ACATCTGCTGTTACATTAGCATATTGCATTATTTATTATGGCCCCAGTTAATACCATAAATAAA
GACTTTTCTTTAACTAC

hide sequence

RefSeq Acc Id:

XM_017600495 ⟹ XP_017455984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,883 (-)	NCBI
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI

Sequence:

show sequence

AAGCCGGAAGTCAAGCCGCTTCCGGCAGGGGAAACTCCTAGTTGCGGCTTCGCCCGGCTTGACA
GGCGCTGTCTCTGCGGGCACCGAGCTACACTCATCCCGCTCGGCCTCCCAATCGCGCCTCGGCC
GCCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCCTTCCCTATGTTCCGGGACCGGAGTACGGG
AAGCAAAGACCCTCTTGTCCAGTCCCCATCATGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGG
TGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGGGTT
TGTGTTTAGTGACTCAGAGGGATCTGCATTAGAGCAGTTTGAAGGTGGCCCCTGTGCTGTTATT
GCACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCTGTTTTCCTCCGAGAAGTCGTCCTGGCGGG
ATTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGC
TTGTGACAGCTCTGGATCATACTGCATGGTTTCATGGTTGAGAGGAAGGACGACTGAGGACGCC
GCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGGACATTCTTCTGCCTTGGCTG
TCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAACTGTATC
AGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTT
TTTCTCTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAGAATTCAATTGAAGATGCAA
ACGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATAAACCTCCTCCTGAC
GGGGCACGCGGTCTCTAACGTGTGGGATGGCGATAGAGAGTGCTCAGGAATGCAACTTCTCGGT
ATCCATGAACAAGCAACTGTAGGATTCTTAACACTAATGGAAGCTTTACGCTATTGTAAGGTTG
GTTCTTACTTGAAATCTCCAAAATTCCCTATTTGGATTGTTGGCAGCGAAACTCACCTCACCGT
ATTTTTTGCCAAGATTTTCGCAGCCTATGAGGAAGCCTTGTTCCTTGTCTGCAAACGGTTGGAC
ACCTTATGCACTGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTT
TTCAGACCTATGACCCAGAAGATAATGGATTCATAGCCGACACACTTCTAGAGGATGTCATGAA
AGCCTTGGACCTTGTTTCAGATCCCGAGTATATAAATCTCATGAAGAACAAATTGGATCCAGAA
GGATTAGGAATCATATTGTTGGGTCCATTTCTTCAAGAATTTTTTCCTGACCAGGGCTCCAGTG
GTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGT
AATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGAC
ACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCGTACATTGAGTTACTGTGGACCACAGACC
GCTCTCCTTCACTCAACTGAGTTGCCCGAGTATTAGTAAGGAAGATTGTCAAACCCGGTGTTGA
AAGGGGGATTCATGACTGGCTACATGAAGCTAAACGCTGGTATTGTTGATTAACTGTAAATAAC
AATTAAAAACACATTTTCAGTGTTTAAGATATGTTTAAATTATTTGTTCTAAAGCTTTATGTTA
AAGGTTATCCTATTTTAATCCTTTCTGTGAAATTTACTAACAAAATTAAGCTTTAATTAAAGTT
CATCTCTTCTGCAGTCAGGTAATTGGTCGTTACCAGATTATAAACACAATATTATAGCATTTTT
ATAATGACATCAGTCACAAAAACCTGCCTGGAGTATCATTCCATTCATTTCATTTTACTGTAGT
ATTTTTAGCAGCCTCCATACCAAAATGCAAAGGTTAATTTTTGTTAATTTTTTTTTTCATTGCT
TAAATCTGTTTTTCCATCACAAATACTAATAAATCACAAATTATTGGCCCTGATCCTTTGGTAA
CAAATTTGACACTAGCATGTTTACAAACAAATAAGAAAGGATAATATGTGGGAGCTTCTTTGTG
TTCACAGGTGCACAGGGATGTGGTTTTACAGTGATGGGGGAAGAATGTGTTGGCTGGGTGGTCT
TACACTGTCGCTGTGACTGTACCGCTCAATACACTTCTCCACCTTCATTCCTACAAGCCAGCTC
TCTTGTATGTTTATAAGCGTGGTAATGCATGAAAACATCTGCTGTTACATTAGCATATTGCATT
ATTTATTATGGCCCCAGTTAATACCATAAATAAAGACTTTTCTTTAACTACA

hide sequence

RefSeq Acc Id:

XM_017600496 ⟹ XP_017455985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,883 (-)	NCBI
Rnor_6.0	17	79,720,534 - 79,798,469 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGTCAAGCCGCTTCCGGCAGGGGAAACTCCTAGTTGCGGCTTCGCCCGGCTTGACAG
GCGCTGTCTCTGCGGGCACCGAGCTACACTCATCCCGCTCGGCCTCCCAATCGCGCCTCGGCCG
CCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCCTTCCCTATGTTCCGGGACCGGAGTACGGGA
AGCAAAGACCCTCTTGTCCAGTCCCCATCATGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGGT
GTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGGGTTT
GTGTTTAGTGACTCAGAGGGATCTGCATTAGAGCAGTTTGAAGGTGGCCCCTGTGCTGTTATTG
CACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCTGTTTTCCTCCGAGAAGTCGTCCTGGCGGGA
TTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCT
TGTGACAGCTCTGGATCATACTGCATGGTTTCATGGTTGAGAGGAAGGACGACTGAGGACGCCG
CTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGGACATTCTTCTGCCTTGGCTGT
CGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAACTGTATCA
GAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTTT
TTCTCTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAGAATTCAATTGAAGATGCAAA
CGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATAAACCTCCTCCTGACG
GGGCACGCGGTCTCTAACGTGTGGGATGGCGATAGAGAGTGCTCAGGAATGCAACTTCTCGGTA
TCCATGAACAAGCAACTGTAGGATTCTTAACACTAATGGAAGCTTTACGCTATTGTAAGGATAT
GGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTTCAGACCTATGACCCA
GAAGATAATGGATTCATAGCCGACACACTTCTAGAGGATGTCATGAAAGCCTTGGACCTTGTTT
CAGATCCCGAGTATATAAATCTCATGAAGAACAAATTGGATCCAGAAGGATTAGGAATCATATT
GTTGGGTCCATTTCTTCAAGAATTTTTTCCTGACCAGGGCTCCAGTGGTCCAGAATCTTTTACT
GTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTAATGTATGTGGAAGGGA
CTGCAGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTG
TCTGCAAACCAAATGGCCGTACATTGAGTTACTGTGGACCACAGACCGCTCTCCTTCACTCAAC
TGAGTTGCCCGAGTATTAGTAAGGAAGATTGTCAAACCCGGTGTTGAAAGGGGGATTCATGACT
GGCTACATGAAGCTAAACGCTGGTATTGTTGATTAACTGTAAATAACAATTAAAAACACATTTT
CAGTGTTTAAGATATGTTTAAATTATTTGTTCTAAAGCTTTATGTTAAAGGTTATCCTATTTTA
ATCCTTTCTGTGAAATTTACTAACAAAATTAAGCTTTAATTAAAGTTCATCTCTTCTGCAGTCA
GGTAATTGGTCGTTACCAGATTATAAACACAATATTATAGCATTTTTATAATGACATCAGTCAC
AAAAACCTGCCTGGAGTATCATTCCATTCATTTCATTTTACTGTAGTATTTTTAGCAGCCTCCA
TACCAAAATGCAAAGGTTAATTTTTGTTAATTTTTTTTTTCATTGCTTAAATCTGTTTTTCCAT
CACAAATACTAATAAATCACAAATTATTGGCCCTGATCCTTTGGTAACAAATTTGACACTAGCA
TGTTTACAAACAAATAAGAAAGGATAATATGTGGGAGCTTCTTTGTGTTCACAGGTGCACAGGG
ATGTGGTTTTACAGTGATGGGGGAAGAATGTGTTGGCTGGGTGGTCTTACACTGTCGCTGTGAC
TGTACCGCTCAATACACTTCTCCACCTTCATTCCTACAAGCCAGCTCTCTTGTATGTTTATAAG
CGTGGTAATGCATGAAAACATCTGCTGTTACATTAGCATATTGCATTATTTATTATGGCCCCAG
TTAATACCATAAATAAAGACTTTTCTTTAACTACA

hide sequence

RefSeq Acc Id:

XM_039095545 ⟹ XP_038951473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,518,353 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,609,235 (-)	NCBI

RefSeq Acc Id:

XM_039095549 ⟹ XP_038951477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,996 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,882 (-)	NCBI

RefSeq Acc Id:

XM_063276246 ⟹ XP_063132316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,998 (-)	NCBI

RefSeq Acc Id:

XM_063276247 ⟹ XP_063132317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI

RefSeq Acc Id:

XM_063276248 ⟹ XP_063132318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,524,009 (-)	NCBI

RefSeq Acc Id:

XR_010058840

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,455,258 - 80,532,999 (-)	NCBI

RefSeq Acc Id:

XR_010058841

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,455,258 - 80,532,997 (-)	NCBI

RefSeq Acc Id:

XR_010058842

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,464,148 - 80,532,999 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099592	(Get FASTA)	NCBI Sequence Viewer
	XP_017455984	(Get FASTA)	NCBI Sequence Viewer
	XP_017455985	(Get FASTA)	NCBI Sequence Viewer
	XP_038951473	(Get FASTA)	NCBI Sequence Viewer
	XP_038951477	(Get FASTA)	NCBI Sequence Viewer
	XP_063132316	(Get FASTA)	NCBI Sequence Viewer
	XP_063132317	(Get FASTA)	NCBI Sequence Viewer
	XP_063132318	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78709	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022986
	ENSRNOP00000022986.5
	ENSRNOP00000107442
	ENSRNOP00000107442.1
	ENSRNOP00000112384.1

RefSeq Acc Id:

NP_001099592 ⟸ NM_001106122

- UniProtKB:

D3Z916 (UniProtKB/TrEMBL), A6JM32 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKK
LLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQS
SCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKG
IENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFL
TLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNG
FIADTLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHY
NGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:

XP_017455984 ⟸ XM_017600495

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKK
LLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQS
SCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKG
IENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFL
TLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKIFAAYEEALFLVCKRLDTLCTDMALVA
PEAPSEQARRVFQTYDPEDNGFIADTLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPF
LQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTK
WPYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:

XP_017455985 ⟸ XM_017600496

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKK
LLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQS
SCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKG
IENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFL
TLMEALRYCKDMALVAPEAPSEQARRVFQTYDPEDNGFIADTLLEDVMKALDLVSDPEYINLMK
NKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDP
MLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN

hide sequence

Ensembl Acc Id:

ENSRNOP00000022986 ⟸ ENSRNOT00000022986

RefSeq Acc Id:	XP_038951477 ⟸ XM_039095549
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951473 ⟸ XM_039095545
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063132316 ⟸ XM_063276246
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063132317 ⟸ XM_063276247
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132318 ⟸ XM_063276248
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000107442 ⟸ ENSRNOT00000154944

Ensembl Acc Id:

ENSRNOP00000112384 ⟸ ENSRNOT00000167583

Protein Domains

Deubiquitinating enzyme MINDY-3/4 conserved

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z916-F1-model_v2	AlphaFold	D3Z916	1-444	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700590

Promoter ID:

EPDNEW_R11114

Type:

initiation region

Name:

Fam188a_1

Description:

family with sequence similarity 188, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	79,798,407 - 79,798,467	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309605	AgrOrtholog
BioCyc Gene	G2FUF-8626	BioCyc
Ensembl Genes	ENSRNOG00000016955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022986	ENTREZGENE
	ENSRNOT00000022986.7	UniProtKB/TrEMBL
	ENSRNOT00000154944	ENTREZGENE
	ENSRNOT00000154944.1	UniProtKB/TrEMBL
	ENSRNOT00000167583.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	DUF4205	UniProtKB/TrEMBL
	EF-hand-like_dom	UniProtKB/TrEMBL
	MINY3/4	UniProtKB/TrEMBL
KEGG Report	rno:291320	UniProtKB/TrEMBL
NCBI Gene	291320	ENTREZGENE
PANTHER	PTHR12473	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-3	UniProtKB/TrEMBL
Pfam	DUF4205	UniProtKB/TrEMBL
PhenoGen	Mindy3	PhenoGen
RatGTEx	ENSRNOG00000016955	RatGTEx
SMART	DUF4205	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0ABK0LAH2_RAT	UniProtKB/TrEMBL
	A0ABK0M8D8_RAT	UniProtKB/TrEMBL
	A6JM32	ENTREZGENE, UniProtKB/TrEMBL
	D3Z916	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-12	Mindy3	MINDY lysine 48 deubiquitinase 3	Fam188a	family with sequence similarity 188, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-12	Fam188a	family with sequence similarity 188, member A	RGD1309605	similar to RIKEN cDNA 2310047O13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1309605	similar to RIKEN cDNA 2310047O13	RGD1309605_predicted	similar to RIKEN cDNA 2310047O13 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1309605_predicted	similar to RIKEN cDNA 2310047O13 (predicted)	LOC291320_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291320_predicted	similar to RIKEN cDNA 2310047O13 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD