Tent4b (terminal nucleotidyltransferase 4B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tent4b (terminal nucleotidyltransferase 4B) Rattus norvegicus
Analyze
Symbol: Tent4b
Name: terminal nucleotidyltransferase 4B
RGD ID: 1309587
Description: Predicted to enable guanylyltransferase activity; poly(A) RNA polymerase activity; and telomerase RNA binding activity. Predicted to be involved in RNA metabolic process; carbohydrate homeostasis; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be part of TRAMP complex. Predicted to be active in nucleolus. Orthologous to human TENT4B (terminal nucleotidyltransferase 4B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307745; non-canonical poly(A) RNA polymerase PAPD5; PAP associated domain containing 5; PAP-associated domain-containing protein 5; Papd5; poly(A) RNA polymerase D5, non-canonical
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,984,244 - 35,042,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1934,980,296 - 35,042,399 (-)EnsemblGRCr8
mRatBN7.21918,807,616 - 18,868,969 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,807,525 - 18,869,537 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1920,490,353 - 20,548,506 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01925,684,981 - 25,743,136 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01928,642,665 - 28,700,983 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01919,771,289 - 19,834,759 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,771,677 - 19,832,812 (-)Ensemblrn6Rnor6.0
Rnor_5.01930,796,930 - 30,860,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41920,121,768 - 20,179,173 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1918,695,572 - 18,752,596 (-)NCBICelera
RGSC_v3.11920,126,603 - 20,185,447 (-)NCBI
Cytogenetic Map19p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (ISO)
nucleolus  (IBA,IEA,ISO)
TRAMP complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18172165   PMID:21855801   PMID:22442037   PMID:22658674   PMID:22681889   PMID:25049417   PMID:26950371   PMID:28383716   PMID:30026317  


Genomics

Comparative Map Data
Tent4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,984,244 - 35,042,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1934,980,296 - 35,042,399 (-)EnsemblGRCr8
mRatBN7.21918,807,616 - 18,868,969 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,807,525 - 18,869,537 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1920,490,353 - 20,548,506 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01925,684,981 - 25,743,136 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01928,642,665 - 28,700,983 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01919,771,289 - 19,834,759 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,771,677 - 19,832,812 (-)Ensemblrn6Rnor6.0
Rnor_5.01930,796,930 - 30,860,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41920,121,768 - 20,179,173 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1918,695,572 - 18,752,596 (-)NCBICelera
RGSC_v3.11920,126,603 - 20,185,447 (-)NCBI
Cytogenetic Map19p11NCBI
TENT4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381650,152,911 - 50,235,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1650,152,911 - 50,235,310 (+)Ensemblhg38GRCh38
GRCh371650,186,822 - 50,269,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361648,745,569 - 48,826,722 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341648,807,487 - 48,820,923NCBI
Celera1634,701,222 - 34,783,612 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1636,074,906 - 36,157,059 (+)NCBIHuRef
CHM1_11651,594,066 - 51,676,295 (+)NCBICHM1_1
T2T-CHM13v2.01655,950,748 - 56,033,128 (+)NCBIT2T-CHM13v2.0
Tent4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,925,229 - 88,989,942 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl888,925,837 - 88,986,355 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38888,199,213 - 88,263,314 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,199,213 - 88,259,722 (+)Ensemblmm10GRCm38
MGSCv37890,723,112 - 90,783,621 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36891,063,224 - 91,149,831 (+)NCBIMGSCv36mm8
Celera892,437,070 - 92,531,945 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.06NCBI
Tent4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,288,432 - 8,347,347 (+)Ensembl
ChiLan1.0NW_0049554338,288,432 - 8,347,347 (+)NCBIChiLan1.0ChiLan1.0
TENT4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21859,605,600 - 59,688,825 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11665,510,594 - 65,594,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01630,415,668 - 30,494,758 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11649,299,504 - 49,376,175 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,299,498 - 49,373,665 (+)EnsemblpanPan2panpan1.1
TENT4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,068,088 - 65,147,853 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,071,111 - 65,147,896 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha261,641,248 - 61,721,069 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0265,613,843 - 65,693,572 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,616,038 - 65,693,521 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1262,437,230 - 62,516,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0263,456,992 - 63,536,334 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0264,345,293 - 64,425,159 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tent4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934956,256,451 - 56,322,312 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364753,266,763 - 3,328,209 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENT4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,605,529 - 34,669,278 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1634,603,157 - 34,669,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TENT4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,947,275 - 36,029,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604740,476,926 - 40,556,929 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tent4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247576,422,421 - 6,491,434 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247576,415,226 - 6,491,539 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tent4b
343 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:151
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000067582
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat

Markers in Region
A009S35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21918,812,002 - 18,812,150 (+)MAPPERmRatBN7.2
mRatBN7.2287,426,659 - 87,426,807 (+)MAPPERmRatBN7.2
Rnor_6.0288,986,299 - 88,986,446NCBIRnor6.0
Rnor_6.01919,775,994 - 19,776,141NCBIRnor6.0
Rnor_5.01930,801,361 - 30,801,508UniSTSRnor5.0
Rnor_5.02108,758,593 - 108,758,740UniSTSRnor5.0
RGSC_v3.4288,979,843 - 88,979,990UniSTSRGSC3.4
RGSC_v3.41920,122,967 - 20,123,114UniSTSRGSC3.4
Celera1918,696,771 - 18,696,918UniSTS
Celera283,197,152 - 83,197,299UniSTS
Cytogenetic Map19p11UniSTS
RH131712  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19p11UniSTS
UniSTS:235961  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81934,999,068 - 34,999,297 (+)Marker Load Pipeline
mRatBN7.21918,825,625 - 18,825,855 (+)MAPPERmRatBN7.2
Rnor_6.01919,789,617 - 19,789,846NCBIRnor6.0
Rnor_5.01930,814,984 - 30,815,213UniSTSRnor5.0
RGSC_v3.41920,136,590 - 20,136,819UniSTSRGSC3.4
Celera1918,710,394 - 18,710,623UniSTS
Cytogenetic Map19p11UniSTS
G32820  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21918,812,002 - 18,812,150 (+)MAPPERmRatBN7.2
mRatBN7.2287,426,659 - 87,426,807 (+)MAPPERmRatBN7.2
Rnor_6.0288,986,299 - 88,986,446NCBIRnor6.0
Rnor_6.01919,775,994 - 19,776,141NCBIRnor6.0
Rnor_5.01930,801,361 - 30,801,508UniSTSRnor5.0
Rnor_5.02108,758,593 - 108,758,740UniSTSRnor5.0
RGSC_v3.4288,979,843 - 88,979,990UniSTSRGSC3.4
RGSC_v3.41920,122,967 - 20,123,114UniSTSRGSC3.4
Celera1918,696,771 - 18,696,918UniSTS
Celera283,197,152 - 83,197,299UniSTS
Cytogenetic Map19p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067582   ⟹   ENSRNOP00000062854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1934,984,244 - 35,041,700 (-)Ensembl
mRatBN7.2 Ensembl1918,810,804 - 18,867,853 (-)Ensembl
Rnor_6.0 Ensembl1919,774,796 - 19,832,459 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084657   ⟹   ENSRNOP00000072094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1934,980,296 - 35,042,057 (-)Ensembl
mRatBN7.2 Ensembl1918,807,525 - 18,869,537 (-)Ensembl
Rnor_6.0 Ensembl1919,771,677 - 19,832,812 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108347   ⟹   ENSRNOP00000083622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1934,984,244 - 35,042,399 (-)Ensembl
mRatBN7.2 Ensembl1918,811,927 - 18,869,537 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116618   ⟹   ENSRNOP00000095048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1934,984,244 - 35,042,399 (-)Ensembl
mRatBN7.2 Ensembl1918,810,804 - 18,868,999 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128688   ⟹   ENSRNOP00000111022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1934,984,244 - 35,042,057 (-)Ensembl
RefSeq Acc Id: NM_001107416   ⟹   NP_001100886
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,041,700 (-)NCBI
mRatBN7.21918,810,802 - 18,868,260 (-)NCBI
Rnor_6.01919,774,796 - 19,832,459 (-)NCBI
Rnor_5.01930,796,930 - 30,860,117 (-)NCBI
RGSC_v3.41920,121,768 - 20,179,173 (-)RGD
Celera1918,695,572 - 18,752,596 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401226   ⟹   NP_001388155
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,042,399 (-)NCBI
mRatBN7.21918,810,802 - 18,868,959 (-)NCBI
RefSeq Acc Id: NM_001415013   ⟹   NP_001401942
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,042,057 (-)NCBI
mRatBN7.21918,810,802 - 18,868,617 (-)NCBI
RefSeq Acc Id: NM_001415015   ⟹   NP_001401944
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,042,057 (-)NCBI
mRatBN7.21918,810,802 - 18,868,617 (-)NCBI
RefSeq Acc Id: XM_039097723   ⟹   XP_038953651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,042,402 (-)NCBI
mRatBN7.21918,810,802 - 18,868,953 (-)NCBI
RefSeq Acc Id: XM_039097724   ⟹   XP_038953652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,042,423 (-)NCBI
mRatBN7.21918,810,802 - 18,868,969 (-)NCBI
RefSeq Acc Id: XM_063278016   ⟹   XP_063134086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 35,023,511 (-)NCBI
RefSeq Acc Id: XM_063278017   ⟹   XP_063134087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81934,984,244 - 34,999,224 (-)NCBI
RefSeq Acc Id: NP_001100886   ⟸   NM_001107416
- Peptide Label: isoform 2
- UniProtKB: A0A8I6GKZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062854   ⟸   ENSRNOT00000067582
Ensembl Acc Id: ENSRNOP00000072094   ⟸   ENSRNOT00000084657
RefSeq Acc Id: XP_038953652   ⟸   XM_039097724
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G9A0 (UniProtKB/TrEMBL),   A0A0G2K239 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953651   ⟸   XM_039097723
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G9A0 (UniProtKB/TrEMBL),   A0A0G2K239 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095048   ⟸   ENSRNOT00000116618
Ensembl Acc Id: ENSRNOP00000083622   ⟸   ENSRNOT00000108347
RefSeq Acc Id: NP_001388155   ⟸   NM_001401226
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GKZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401944   ⟸   NM_001415015
- Peptide Label: isoform 4
- UniProtKB: A0A8I6GKZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401942   ⟸   NM_001415013
- Peptide Label: isoform 3
- UniProtKB: A0A8I6GKZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134086   ⟸   XM_063278016
- Peptide Label: isoform X2
- UniProtKB: A6KDA3 (UniProtKB/TrEMBL),   D3ZBG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134087   ⟸   XM_063278017
- Peptide Label: isoform X3
- UniProtKB: A6KDA3 (UniProtKB/TrEMBL),   D3ZBG8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111022   ⟸   ENSRNOT00000128688
Protein Domains
PAP-associated   Poly(A) RNA polymerase mitochondrial-like central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K239-F1-model_v2 AlphaFold A0A0G2K239 1-607 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700978
Promoter ID:EPDNEW_R11502
Type:single initiation site
Name:Papd5_1
Description:poly RNA polymerase D5, non-canonical
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11503  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01919,832,482 - 19,832,542EPDNEW
RGD ID:13700982
Promoter ID:EPDNEW_R11503
Type:single initiation site
Name:Papd5_2
Description:poly RNA polymerase D5, non-canonical
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11502  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01919,832,726 - 19,832,786EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309587 AgrOrtholog
BioCyc Gene G2FUF-6273 BioCyc
Ensembl Genes ENSRNOG00000024212 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067582 ENTREZGENE
  ENSRNOT00000067582.4 UniProtKB/TrEMBL
  ENSRNOT00000084657.3 UniProtKB/TrEMBL
  ENSRNOT00000108347 ENTREZGENE
  ENSRNOT00000108347.2 UniProtKB/TrEMBL
  ENSRNOT00000116618.2 UniProtKB/TrEMBL
  ENSRNOT00000128688 ENTREZGENE
  ENSRNOT00000128688.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
InterPro MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  Trf4-like UniProtKB/TrEMBL
KEGG Report rno:307745 UniProtKB/TrEMBL
NCBI Gene 307745 ENTREZGENE
PANTHER PTHR23092 UniProtKB/TrEMBL
  PTHR23092:SF51 UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
PhenoGen Tent4b PhenoGen
RatGTEx ENSRNOG00000024212 RatGTEx
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A0G2K239 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G9A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LJG4_RAT UniProtKB/TrEMBL
  A6KDA3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZBG8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-27 Tent4b  terminal nucleotidyltransferase 4B  Papd5  poly(A) RNA polymerase D5, non-canonical  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-27 Papd5  poly(A) RNA polymerase D5, non-canonical  Papd5  PAP associated domain containing 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Papd5  PAP associated domain containing 5   Papd5_predicted  PAP associated domain containing 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Papd5_predicted  PAP associated domain containing 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED