Ddx51 (DEAD-box helicase 51) - Rat Genome Database

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Gene: Ddx51 (DEAD-box helicase 51) Rattus norvegicus
Analyze
Symbol: Ddx51
Name: DEAD-box helicase 51
RGD ID: 1309580
Description: Predicted to enable several functions, including ATP binding activity; RNA binding activity; and helicase activity. Predicted to be active in nucleus. Orthologous to human DDX51 (DEAD-box helicase 51); INTERACTS WITH 2,4-dinitrotoluene; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP-dependent RNA helicase DDX51; DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; LOC304570
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,671,078 - 51,675,900 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,671,078 - 51,676,099 (-)EnsemblGRCr8
mRatBN7.21246,011,303 - 46,015,989 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,011,070 - 46,016,200 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1247,186,877 - 47,191,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,792,219 - 47,796,908 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,852,745 - 46,857,434 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,067,183 - 52,072,249 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,067,183 - 52,072,108 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,805,410 - 53,810,480 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,155,637 - 46,160,562 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,569,858 - 47,574,724 (-)NCBICelera
RGSC_v3.11246,020,550 - 46,024,663 (-)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Ddx51
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,671,078 - 51,675,900 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,671,078 - 51,676,099 (-)EnsemblGRCr8
mRatBN7.21246,011,303 - 46,015,989 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,011,070 - 46,016,200 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1247,186,877 - 47,191,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,792,219 - 47,796,908 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,852,745 - 46,857,434 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,067,183 - 52,072,249 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,067,183 - 52,072,108 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,805,410 - 53,810,480 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,155,637 - 46,160,562 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,569,858 - 47,574,724 (-)NCBICelera
RGSC_v3.11246,020,550 - 46,024,663 (-)NCBI
Cytogenetic Map12q16NCBI
DDX51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812132,136,594 - 132,144,319 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12132,136,591 - 132,144,335 (-)Ensemblhg38GRCh38
GRCh3712132,621,139 - 132,628,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,187,092 - 131,194,833 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412131,289,275 - 131,295,083NCBI
Celera12132,239,406 - 132,247,147 (-)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12129,506,477 - 129,514,218 (-)NCBIHuRef
CHM1_112132,441,003 - 132,448,744 (-)NCBICHM1_1
T2T-CHM13v2.012132,186,137 - 132,193,862 (-)NCBIT2T-CHM13v2.0
Ddx51
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,801,298 - 110,810,885 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,801,317 - 110,808,362 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385110,653,432 - 110,663,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,653,451 - 110,660,496 (+)Ensemblmm10GRCm38
MGSCv375111,082,470 - 111,089,515 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365110,893,776 - 110,900,798 (+)NCBIMGSCv36mm8
Celera5107,785,458 - 107,792,503 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.69NCBI
Ddx51
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955482632,030 - 636,959 (+)NCBIChiLan1.0ChiLan1.0
DDX51
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,234,020 - 140,240,604 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,230,526 - 140,237,076 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012129,797,708 - 129,803,006 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,225,416 - 134,230,944 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,225,416 - 134,234,202 (-)EnsemblpanPan2panpan1.1
DDX51
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126832,276 - 838,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26830,930 - 837,338 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha26876,266 - 882,185 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.026892,667 - 898,586 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26891,656 - 900,218 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126831,477 - 837,396 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026920,043 - 925,962 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026851,207 - 857,129 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ddx51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,417,504 - 122,421,547 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,300,001 - 2,304,411 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,299,533 - 2,303,576 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX51
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1423,262,776 - 23,270,896 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11423,262,738 - 23,269,905 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,730,058 - 24,735,726 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDX51
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,520,190 - 127,525,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11127,520,489 - 127,525,412 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037117,421,362 - 117,426,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddx51
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,816,361 - 27,823,978 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474727,819,475 - 27,824,022 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ddx51
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11643,687,830 - 43,692,591 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:74
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000068621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
RH130802  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,011,496 - 46,011,686 (+)MAPPERmRatBN7.2
Rnor_6.01252,067,610 - 52,067,799NCBIRnor6.0
Rnor_5.01253,805,837 - 53,806,026UniSTSRnor5.0
RGSC_v3.41246,156,064 - 46,156,253UniSTSRGSC3.4
Celera1247,570,285 - 47,570,474UniSTS
RH 3.4 Map12808.81UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068621   ⟹   ENSRNOP00000060123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,671,078 - 51,676,099 (-)Ensembl
mRatBN7.2 Ensembl1246,011,070 - 46,015,995 (-)Ensembl
Rnor_6.0 Ensembl1252,067,183 - 52,072,108 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088306   ⟹   ENSRNOP00000073152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,671,078 - 51,676,099 (-)Ensembl
mRatBN7.2 Ensembl1246,011,308 - 46,016,200 (-)Ensembl
Rnor_6.0 Ensembl1252,067,771 - 52,072,106 (-)Ensembl
RefSeq Acc Id: NM_001401167   ⟹   NP_001388096
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,671,078 - 51,675,764 (-)NCBI
mRatBN7.21246,011,303 - 46,015,989 (-)NCBI
RefSeq Acc Id: XM_063271392   ⟹   XP_063127462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,673,543 - 51,675,900 (-)NCBI
RefSeq Acc Id: XR_010056395
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,673,316 - 51,675,900 (-)NCBI
RefSeq Acc Id: XR_010056396
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,673,422 - 51,675,900 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001388096 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127462 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14035 (Get FASTA)   NCBI Sequence Viewer  
  EDM14036 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060123.2
  ENSRNOP00000073152
  ENSRNOP00000073152.2
Ensembl Acc Id: ENSRNOP00000060123   ⟸   ENSRNOT00000068621
Ensembl Acc Id: ENSRNOP00000073152   ⟸   ENSRNOT00000088306
RefSeq Acc Id: NP_001388096   ⟸   NM_001401167
- UniProtKB: A6J296 (UniProtKB/TrEMBL),   D3ZIE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127462   ⟸   XM_063271392
- Peptide Label: isoform X1
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4S4-F1-model_v2 AlphaFold A0A0G2K4S4 1-635 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698736
Promoter ID:EPDNEW_R9260
Type:initiation region
Name:Ddx51_1
Description:DEAD-box helicase 51
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01252,072,119 - 52,072,179EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309580 AgrOrtholog
BioCyc Gene G2FUF-18811 BioCyc
Ensembl Genes ENSRNOG00000037480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068621.4 UniProtKB/TrEMBL
  ENSRNOT00000088306 ENTREZGENE
  ENSRNOT00000088306.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
NCBI Gene 304570 ENTREZGENE
PANTHER RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen Ddx51 PhenoGen
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037480 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K4S4_RAT UniProtKB/TrEMBL
  A6J296 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIE3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Ddx51  DEAD-box helicase 51  Ddx51  DEAD (Asp-Glu-Ala-Asp) box polypeptide 51  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ddx51  DEAD (Asp-Glu-Ala-Asp) box polypeptide 51   Ddx51_predicted  DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ddx51_predicted  DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (predicted)      Symbol and Name status set to approved 70820 APPROVED