Cisd1 (CDGSH iron sulfur domain 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cisd1 (CDGSH iron sulfur domain 1) Rattus norvegicus
Analyze
Symbol: Cisd1
Name: CDGSH iron sulfur domain 1
RGD ID: 1309529
Description: Predicted to enable several functions, including 2 iron, 2 sulfur cluster binding activity; L-cysteine transaminase activity; and protein homodimerization activity. Predicted to be involved in intracellular iron ion homeostasis and protein maturation. Predicted to act upstream of or within regulation of cellular respiration. Located in cytoplasmic side of mitochondrial outer membrane. Orthologous to human CISD1 (CDGSH iron sulfur domain 1); INTERACTS WITH 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CDGSH iron sulfur domain-containing protein 1; CDGSH iron-sulfur domain-containing protein 1; cysteine transaminase CISD1; LOC294362; MitoNEET; RGD1309529; similar to DNA segment, Chr 10, ERATO Doi 214, expressed
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,254,462 - 17,267,843 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2017,254,187 - 17,271,042 (+)EnsemblGRCr8
mRatBN7.22017,255,302 - 17,268,688 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2017,255,151 - 17,284,924 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2017,982,017 - 17,995,396 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,337,013 - 17,350,392 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02017,809,669 - 17,823,049 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,493,538 - 18,506,923 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,493,538 - 18,506,912 (+)Ensemblrn6Rnor6.0
Rnor_5.02020,659,781 - 20,673,162 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42017,985,985 - 17,999,366 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2018,654,774 - 18,668,172 (+)NCBICelera
RGSC_v3.12017,999,708 - 18,013,170 (+)NCBI
Cytogenetic Map20p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
atrazine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
cocaine  (EXP)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
Evodiamine  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glyphosate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
nickel sulfate  (ISO)
nitrates  (ISO)
omeprazole  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
Propiverine  (EXP)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trimellitic anhydride  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. MitoNEET is an iron-containing outer mitochondrial membrane protein that regulates oxidative capacity. Wiley SE, etal., Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5318-23. Epub 2007 Mar 21.
Additional References at PubMed
PMID:12477932   PMID:14570702   PMID:14651853   PMID:15489334   PMID:17766439   PMID:17766440   PMID:18614015   PMID:19348892   PMID:20833797   PMID:23376485   PMID:27748416   PMID:29476059  
PMID:33723216   PMID:35352799   PMID:37269467  


Genomics

Comparative Map Data
Cisd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,254,462 - 17,267,843 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2017,254,187 - 17,271,042 (+)EnsemblGRCr8
mRatBN7.22017,255,302 - 17,268,688 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2017,255,151 - 17,284,924 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2017,982,017 - 17,995,396 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,337,013 - 17,350,392 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02017,809,669 - 17,823,049 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,493,538 - 18,506,923 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,493,538 - 18,506,912 (+)Ensemblrn6Rnor6.0
Rnor_5.02020,659,781 - 20,673,162 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42017,985,985 - 17,999,366 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2018,654,774 - 18,668,172 (+)NCBICelera
RGSC_v3.12017,999,708 - 18,013,170 (+)NCBI
Cytogenetic Map20p11NCBI
CISD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381058,269,162 - 58,289,586 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1058,269,151 - 58,289,586 (+)Ensemblhg38GRCh38
GRCh371060,028,922 - 60,049,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361059,698,921 - 59,717,868 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341059,698,920 - 59,717,867NCBI
Celera1053,293,811 - 53,313,947 (+)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1054,017,734 - 54,037,889 (+)NCBIHuRef
CHM1_11060,310,639 - 60,330,794 (+)NCBICHM1_1
T2T-CHM13v2.01059,123,271 - 59,143,693 (+)NCBIT2T-CHM13v2.0
Cisd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391071,166,324 - 71,180,679 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1071,166,310 - 71,180,784 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381071,330,494 - 71,344,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1071,330,480 - 71,344,954 (-)Ensemblmm10GRCm38
MGSCv371070,793,242 - 70,807,597 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361070,725,794 - 70,740,149 (-)NCBIMGSCv36mm8
Celera1072,405,693 - 72,420,047 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.88NCBI
Cisd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542512,009,702 - 12,020,956 (+)Ensembl
ChiLan1.0NW_00495542512,009,704 - 12,020,956 (+)NCBIChiLan1.0ChiLan1.0
CISD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2870,477,574 - 70,496,226 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11070,483,012 - 70,501,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01054,800,423 - 54,822,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11057,020,351 - 57,041,928 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1057,020,351 - 57,041,928 (+)EnsemblpanPan2panpan1.1
CISD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha410,654,205 - 10,672,015 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0410,717,948 - 10,735,572 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl410,717,991 - 10,737,510 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1410,702,717 - 10,719,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0410,822,037 - 10,839,524 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0411,131,497 - 11,149,126 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cisd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721370,617,791 - 70,637,540 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366144,703,371 - 4,723,862 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366144,706,463 - 4,723,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100520401
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11166,967,238 - 66,967,696 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,078,934 - 74,079,275 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CISD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1973,011,461 - 73,029,998 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl973,011,797 - 73,030,266 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604833,913,149 - 33,932,988 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cisd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247915,307,376 - 5,324,368 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247915,306,777 - 5,325,250 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cisd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11815,513,893 - 15,527,286 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cisd1
53 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:163
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000000749
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000749   ⟹   ENSRNOP00000000749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2017,255,151 - 17,284,924 (+)Ensembl
Rnor_6.0 Ensembl2018,493,538 - 18,506,912 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103790   ⟹   ENSRNOP00000085759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,254,443 - 17,266,919 (+)Ensembl
mRatBN7.2 Ensembl2017,255,288 - 17,267,849 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105985   ⟹   ENSRNOP00000087939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,259,554 - 17,267,842 (+)Ensembl
mRatBN7.2 Ensembl2017,260,252 - 17,284,924 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119535   ⟹   ENSRNOP00000086958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,258,949 - 17,267,614 (+)Ensembl
mRatBN7.2 Ensembl2017,259,789 - 17,268,459 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125113   ⟹   ENSRNOP00000110230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,254,187 - 17,271,042 (+)Ensembl
RefSeq Acc Id: NM_001106385   ⟹   NP_001099855
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82017,254,462 - 17,267,843 (+)NCBI
mRatBN7.22017,255,302 - 17,268,688 (+)NCBI
Rnor_6.02018,493,538 - 18,506,919 (+)NCBI
Rnor_5.02020,659,781 - 20,673,162 (+)NCBI
RGSC_v3.42017,985,985 - 17,999,366 (+)RGD
Celera2018,654,774 - 18,668,172 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099855 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI59420 (Get FASTA)   NCBI Sequence Viewer  
  B0K020 (Get FASTA)   NCBI Sequence Viewer  
  EDL97255 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001099855   ⟸   NM_001106385
- UniProtKB: B0K020 (UniProtKB/Swiss-Prot),   A0A8I6A430 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000749   ⟸   ENSRNOT00000000749
Ensembl Acc Id: ENSRNOP00000087939   ⟸   ENSRNOT00000105985
Ensembl Acc Id: ENSRNOP00000085759   ⟸   ENSRNOT00000103790
Ensembl Acc Id: ENSRNOP00000086958   ⟸   ENSRNOT00000119535
Ensembl Acc Id: ENSRNOP00000110230   ⟸   ENSRNOT00000125113
Protein Domains
Iron-binding zinc finger CDGSH type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0K020-F1-model_v2 AlphaFold B0K020 1-108 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701552
Promoter ID:EPDNEW_R12076
Type:initiation region
Name:Cisd1_1
Description:CDGSH iron sulfur domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02018,493,519 - 18,493,579EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309529 AgrOrtholog
BioCyc Gene G2FUF-4048 BioCyc
Ensembl Genes ENSRNOG00000000610 Ensembl
Gene3D-CATH 3.40.5.90 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8370407 IMAGE-MGC_LOAD
InterPro CISD1/2 UniProtKB/Swiss-Prot
  FeS-contain_CDGSH-typ UniProtKB/Swiss-Prot
  FeS-contain_mitoNEET_C UniProtKB/Swiss-Prot
  FeS-contain_mitoNEET_N UniProtKB/Swiss-Prot
KEGG Report rno:294362 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188705 IMAGE-MGC_LOAD
NCBI Gene 294362 ENTREZGENE
PANTHER CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR13680 UniProtKB/Swiss-Prot
Pfam MitoNEET_N UniProtKB/Swiss-Prot
  zf-CDGSH UniProtKB/Swiss-Prot
PhenoGen Cisd1 PhenoGen
RatGTEx ENSRNOG00000000610 RatGTEx
SMART ZnF_CDGSH UniProtKB/Swiss-Prot
UniProt A0A8I6A322_RAT UniProtKB/TrEMBL
  A0A8I6A430 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFI7_RAT UniProtKB/TrEMBL
  A0ABK0LV75_RAT UniProtKB/TrEMBL
  B0K020 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Cisd1  CDGSH iron sulfur domain 1  RGD1309529_predicted  similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1309529_predicted  similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted)  LOC294362_predicted    Symbol and Name status set to approved 1331353 APPROVED