Reep6 (receptor accessory protein 6) - Rat Genome Database

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Gene: Reep6 (receptor accessory protein 6) Rattus norvegicus
Analyze
Symbol: Reep6
Name: receptor accessory protein 6
RGD ID: 1309508
Description: Predicted to be involved in detection of light stimulus involved in visual perception. Predicted to be located in several cellular components, including endoplasmic reticulum membrane; photoreceptor inner segment; and rod spherule. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deleted in polyposis 1-like 1; Dp1l1; LOC362835; polyposis locus protein 1-like 1; receptor expression-enhancing protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,024,601 - 10,031,507 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,024,602 - 10,031,740 (-)EnsemblGRCr8
mRatBN7.279,373,927 - 9,380,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,373,927 - 9,380,597 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,250,854 - 12,257,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,126,196 - 14,132,864 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,993,547 - 12,000,219 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,240,059 - 12,246,814 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,240,060 - 12,246,729 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,409,854 - 12,416,794 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4710,885,266 - 10,891,936 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,550,719 - 7,557,389 (-)NCBICelera
RGSC_v3.1710,885,266 - 10,891,936 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (EXP,ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
Ethylenethiourea  (EXP)
finasteride  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
GSK-J4  (ISO)
GW 4064  (ISO)
hypochlorous acid  (ISO)
indinavir  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
ivermectin  (ISO)
lamivudine  (ISO)
leflunomide  (EXP)
menadione  (ISO)
mercury dibromide  (ISO)
methidathion  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
N(4)-hydroxycytidine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
niclosamide  (ISO)
nitrofen  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
saquinavir  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
topotecan  (EXP)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
trovafloxacin  (EXP,ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:15728532   PMID:21630459   PMID:23284756   PMID:24098485   PMID:24691551   PMID:27889058   PMID:36064821  


Genomics

Comparative Map Data
Reep6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,024,601 - 10,031,507 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,024,602 - 10,031,740 (-)EnsemblGRCr8
mRatBN7.279,373,927 - 9,380,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,373,927 - 9,380,597 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,250,854 - 12,257,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,126,196 - 14,132,864 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,993,547 - 12,000,219 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,240,059 - 12,246,814 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,240,060 - 12,246,729 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,409,854 - 12,416,794 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4710,885,266 - 10,891,936 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,550,719 - 7,557,389 (-)NCBICelera
RGSC_v3.1710,885,266 - 10,891,936 (-)NCBI
Cytogenetic Map7q11NCBI
REEP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,491,181 - 1,497,927 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,491,034 - 1,497,927 (+)Ensemblhg38GRCh38
GRCh37191,491,180 - 1,497,926 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,442,165 - 1,448,924 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34191,442,164 - 1,448,923NCBI
Celera191,425,157 - 1,431,938 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,264,849 - 1,271,632 (+)NCBIHuRef
CHM1_1191,491,169 - 1,497,928 (+)NCBICHM1_1
T2T-CHM13v2.0191,461,211 - 1,467,957 (+)NCBIT2T-CHM13v2.0
Reep6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,165,831 - 80,172,275 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,165,787 - 80,172,275 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381080,329,997 - 80,336,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,329,953 - 80,336,441 (+)Ensemblmm10GRCm38
MGSCv371079,792,915 - 79,799,186 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361079,733,299 - 79,739,570 (+)NCBIMGSCv36mm8
Celera1081,345,045 - 81,351,316 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Reep6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049557643,793 - 23,152 (-)Ensembl
ChiLan1.0NW_00495576417,640 - 22,996 (-)NCBIChiLan1.0ChiLan1.0
REEP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,859,911 - 5,866,706 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,090,764 - 5,097,559 (+)NCBINHGRI_mPanPan1
PanPan1.1191,467,186 - 1,473,988 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,467,186 - 1,473,988 (+)EnsemblpanPan2panpan1.1
REEP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,364,419 - 57,370,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,157,105 - 57,161,301 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02058,096,365 - 58,100,561 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,095,823 - 58,100,567 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,152,592 - 57,156,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,632,051 - 57,636,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,833,829 - 57,838,250 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Reep6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,028,586 - 217,034,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588799,414 - 809,852 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936588800,492 - 804,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REEP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1276,983,431 - 76,989,017 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,876,316 - 77,878,381 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REEP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,264,551 - 1,271,674 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,580,929 - 7,588,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Reep6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,202,984 - 7,208,408 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248287,202,911 - 7,208,169 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Reep6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11154,546,250 - 154,551,668 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Reep6
15 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:126
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000044030
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH129166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,373,999 - 9,374,187 (+)MAPPERmRatBN7.2
Rnor_6.0712,240,132 - 12,240,319NCBIRnor6.0
Rnor_5.0712,409,927 - 12,410,114UniSTSRnor5.0
RGSC_v3.4710,885,339 - 10,885,526UniSTSRGSC3.4
Celera77,550,792 - 7,550,979UniSTS
RH 3.4 Map739.1UniSTS
Cytogenetic Map7q11UniSTS
RH129194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,374,001 - 9,374,182 (+)MAPPERmRatBN7.2
Rnor_6.0712,240,134 - 12,240,314NCBIRnor6.0
Rnor_5.0712,409,929 - 12,410,109UniSTSRnor5.0
RGSC_v3.4710,885,341 - 10,885,521UniSTSRGSC3.4
Celera77,550,794 - 7,550,974UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000044030   ⟹   ENSRNOP00000039493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,024,602 - 10,031,740 (-)Ensembl
mRatBN7.2 Ensembl79,373,928 - 9,380,597 (-)Ensembl
Rnor_6.0 Ensembl712,240,060 - 12,246,729 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101672   ⟹   ENSRNOP00000085468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,026,075 - 10,031,271 (-)Ensembl
mRatBN7.2 Ensembl79,375,401 - 9,380,597 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104094   ⟹   ENSRNOP00000091886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,025,063 - 10,031,271 (-)Ensembl
mRatBN7.2 Ensembl79,373,927 - 9,380,597 (-)Ensembl
RefSeq Acc Id: NM_001013218   ⟹   NP_001013236
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,024,601 - 10,031,271 (-)NCBI
mRatBN7.279,373,927 - 9,380,597 (-)NCBI
Rnor_6.0712,240,059 - 12,246,729 (-)NCBI
Rnor_5.0712,409,854 - 12,416,794 (-)NCBI
RGSC_v3.4710,885,266 - 10,891,936 (-)RGD
Celera77,550,719 - 7,557,389 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240967   ⟹   XP_006241029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,024,601 - 10,031,507 (-)NCBI
mRatBN7.279,375,271 - 9,380,845 (-)NCBI
Rnor_6.0712,240,801 - 12,246,814 (-)NCBI
Rnor_5.0712,409,854 - 12,416,794 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001013236 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241029 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83830 (Get FASTA)   NCBI Sequence Viewer  
  EDL89293 (Get FASTA)   NCBI Sequence Viewer  
  EDL89294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039493.3
  ENSRNOP00000091886
GenBank Protein Q5XI60 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013236   ⟸   NM_001013218
- UniProtKB: Q5XI60 (UniProtKB/Swiss-Prot),   A6K8M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241029   ⟸   XM_006240967
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGE9 (UniProtKB/TrEMBL),   A6K8M3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039493   ⟸   ENSRNOT00000044030
Ensembl Acc Id: ENSRNOP00000085468   ⟸   ENSRNOT00000101672
Ensembl Acc Id: ENSRNOP00000091886   ⟸   ENSRNOT00000104094

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI60-F1-model_v2 AlphaFold Q5XI60 1-211 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695022
Promoter ID:EPDNEW_R5547
Type:initiation region
Name:Reep6_1
Description:receptor accessory protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0712,246,753 - 12,246,813EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309508 AgrOrtholog
BioCyc Gene G2FUF-34937 BioCyc
Ensembl Genes ENSRNOG00000033262 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000044030.4 UniProtKB/Swiss-Prot
  ENSRNOT00000104094 ENTREZGENE
IMAGE_CLONE IMAGE:7112359 IMAGE-MGC_LOAD
InterPro TB2_DP1_HVA22 UniProtKB/Swiss-Prot
KEGG Report rno:362835 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94922 IMAGE-MGC_LOAD
NCBI Gene 362835 ENTREZGENE
PANTHER PTHR12300 UniProtKB/Swiss-Prot
  RECEPTOR EXPRESSION-ENHANCING PROTEIN 6 UniProtKB/Swiss-Prot
Pfam TB2_DP1_HVA22 UniProtKB/Swiss-Prot
PhenoGen Reep6 PhenoGen
RatGTEx ENSRNOG00000033262 RatGTEx
UniProt A0A8I6A1Q1_RAT UniProtKB/TrEMBL
  A0A8I6AGE9 ENTREZGENE, UniProtKB/TrEMBL
  A6K8M3 ENTREZGENE, UniProtKB/TrEMBL
  A6K8M4 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI60 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Reep6  receptor accessory protein 6  Dp1l1  deleted in polyposis 1-like 1  Symbol and Name updated 1299863 APPROVED
2005-12-06 Dp1l1  deleted in polyposis 1-like 1  Dp1l1_predicted  deleted in polyposis 1-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dp1l1_predicted  deleted in polyposis 1-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED