Pigo (phosphatidylinositol glycan anchor biosynthesis, class O) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pigo (phosphatidylinositol glycan anchor biosynthesis, class O) Rattus norvegicus
Analyze
Symbol: Pigo
Name: phosphatidylinositol glycan anchor biosynthesis, class O
RGD ID: 1309498
Description: Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hyperphosphatasia with impaired intellectual development syndrome 2. Orthologous to human PIGO (phosphatidylinositol glycan anchor biosynthesis class O); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH acrylamide; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GPI ethanolamine phosphate transferase 3; LOC313341; phosphatidylinositol glycan, class O
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,040,979 - 62,052,067 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,037,308 - 62,052,075 (-)EnsemblGRCr8
mRatBN7.2557,244,721 - 57,256,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,245,166 - 57,254,146 (-)EnsemblmRatBN7.2
Rnor_6.0558,461,055 - 58,470,699 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,461,759 - 58,469,399 (-)Ensemblrn6Rnor6.0
Rnor_5.0562,986,808 - 62,996,216 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,507,316 - 59,515,305 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera555,833,827 - 55,843,121 (-)NCBICelera
RGSC_v3.1559,494,818 - 59,517,946 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10781593   PMID:19946888   PMID:24049131  


Genomics

Comparative Map Data
Pigo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,040,979 - 62,052,067 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,037,308 - 62,052,075 (-)EnsemblGRCr8
mRatBN7.2557,244,721 - 57,256,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,245,166 - 57,254,146 (-)EnsemblmRatBN7.2
Rnor_6.0558,461,055 - 58,470,699 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,461,759 - 58,469,399 (-)Ensemblrn6Rnor6.0
Rnor_5.0562,986,808 - 62,996,216 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,507,316 - 59,515,305 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera555,833,827 - 55,843,121 (-)NCBICelera
RGSC_v3.1559,494,818 - 59,517,946 (-)NCBI
Cytogenetic Map5q22NCBI
PIGO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,088,688 - 35,096,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,085,493 - 35,096,632 (-)Ensemblhg38GRCh38
GRCh37935,088,685 - 35,096,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,078,688 - 35,086,579 (-)NCBIBuild 36Build 36hg18NCBI36
Celera935,020,661 - 35,028,552 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,044,151 - 35,052,064 (-)NCBIHuRef
CHM1_1935,088,546 - 35,096,459 (-)NCBICHM1_1
T2T-CHM13v2.0935,107,866 - 35,115,769 (-)NCBIT2T-CHM13v2.0
Pigo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,016,964 - 43,026,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,017,635 - 43,025,819 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38443,017,626 - 43,027,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,017,635 - 43,025,819 (-)Ensemblmm10GRCm38
MGSCv37443,030,510 - 43,038,628 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36443,038,738 - 43,046,856 (-)NCBIMGSCv36mm8
Celera443,047,708 - 43,055,820 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map422.98NCBI
Pigo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,084,932 - 1,094,243 (+)Ensembl
ChiLan1.0NW_0049554721,084,932 - 1,094,243 (+)NCBIChiLan1.0ChiLan1.0
PIGO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,493,208 - 89,501,127 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1989,499,092 - 89,507,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,939,258 - 34,947,167 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,744,664 - 35,752,522 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,744,664 - 35,752,522 (-)EnsemblpanPan2panpan1.1
STOML2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,675,963 - 51,679,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,675,963 - 51,679,199 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1150,244,774 - 50,248,124 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01152,741,661 - 52,745,011 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,741,665 - 52,744,982 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,285,489 - 51,288,839 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,270,641 - 51,273,991 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,972,516 - 51,975,866 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pigo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947166,570,153 - 166,579,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,118,010 - 3,125,587 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,116,627 - 3,126,681 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,878,355 - 235,887,993 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11235,880,088 - 235,888,338 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,405,475 - 263,413,464 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11245,521,468 - 45,529,936 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1245,521,976 - 45,533,729 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603842,637,262 - 42,646,800 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624915284,333 - 291,467 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624915284,079 - 294,696 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pigo
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v113,479,900 - 3,489,202 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pigo
69 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:90
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000013213
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
D5Got229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2557,250,166 - 57,250,414 (+)MAPPERmRatBN7.2
Rnor_6.0558,466,501 - 58,466,748NCBIRnor6.0
Rnor_5.0562,992,037 - 62,992,284UniSTSRnor5.0
RGSC_v3.4559,512,407 - 59,512,654UniSTSRGSC3.4
Celera555,838,924 - 55,839,171UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013213   ⟹   ENSRNOP00000013213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,040,621 - 62,049,676 (-)Ensembl
mRatBN7.2 Ensembl557,245,166 - 57,253,735 (-)Ensembl
Rnor_6.0 Ensembl558,461,759 - 58,469,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096059   ⟹   ENSRNOP00000080658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,037,308 - 62,049,688 (-)Ensembl
mRatBN7.2 Ensembl557,245,166 - 57,254,146 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096499   ⟹   ENSRNOP00000085952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,040,239 - 62,049,079 (-)Ensembl
mRatBN7.2 Ensembl557,245,166 - 57,254,146 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118014   ⟹   ENSRNOP00000091520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,040,239 - 62,049,550 (-)Ensembl
mRatBN7.2 Ensembl557,245,166 - 57,254,146 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000124803   ⟹   ENSRNOP00000103342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,040,239 - 62,049,688 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164556   ⟹   ENSRNOP00000102008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,040,239 - 62,052,075 (-)Ensembl
RefSeq Acc Id: XM_039110981   ⟹   XP_038966909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,040,979 - 62,050,945 (-)NCBI
mRatBN7.2557,244,721 - 57,254,393 (-)NCBI
RefSeq Acc Id: XM_039110982   ⟹   XP_038966910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,040,979 - 62,052,067 (-)NCBI
mRatBN7.2557,245,164 - 57,256,252 (-)NCBI
RefSeq Acc Id: XM_039110983   ⟹   XP_038966911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,040,979 - 62,049,521 (-)NCBI
mRatBN7.2557,245,164 - 57,253,671 (-)NCBI
RefSeq Acc Id: XM_039110984   ⟹   XP_038966912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,040,979 - 62,048,472 (-)NCBI
mRatBN7.2557,245,164 - 57,252,660 (-)NCBI
RefSeq Acc Id: XM_063288526   ⟹   XP_063144596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,042,668 - 62,050,939 (-)NCBI
RefSeq Acc Id: XM_233141   ⟹   XP_233141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,040,979 - 62,050,924 (-)NCBI
mRatBN7.2557,245,164 - 57,254,390 (-)NCBI
Rnor_6.0558,461,055 - 58,470,698 (-)NCBI
Rnor_5.0562,986,808 - 62,996,216 (-)NCBI
RGSC_v3.4559,507,316 - 59,515,305 (-)RGD
Sequence:
RefSeq Acc Id: XP_233141   ⟸   XM_233141
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZR91 (UniProtKB/TrEMBL),   D3ZTP8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013213   ⟸   ENSRNOT00000013213
RefSeq Acc Id: XP_038966909   ⟸   XM_039110981
- Peptide Label: isoform X1
- UniProtKB: D3ZTP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966910   ⟸   XM_039110982
- Peptide Label: isoform X1
- UniProtKB: D3ZTP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966911   ⟸   XM_039110983
- Peptide Label: isoform X3
- UniProtKB: D3ZTP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966912   ⟸   XM_039110984
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000080658   ⟸   ENSRNOT00000096059
Ensembl Acc Id: ENSRNOP00000091520   ⟸   ENSRNOT00000118014
Ensembl Acc Id: ENSRNOP00000085952   ⟸   ENSRNOT00000096499
RefSeq Acc Id: XP_063144596   ⟸   XM_063288526
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A4S1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103342   ⟸   ENSRNOT00000124803
Ensembl Acc Id: ENSRNOP00000102008   ⟸   ENSRNOT00000164556

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTP8-F1-model_v2 AlphaFold D3ZTP8 1-1100 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693674
Promoter ID:EPDNEW_R4193
Type:single initiation site
Name:Pigo_1
Description:phosphatidylinositol glycan anchor biosynthesis, class O
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0558,469,388 - 58,469,448EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309498 AgrOrtholog
BioCyc Gene G2FUF-41525 BioCyc
Ensembl Genes ENSRNOG00000009930 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013213.7 UniProtKB/TrEMBL
  ENSRNOT00000096059.2 UniProtKB/TrEMBL
  ENSRNOT00000096499.2 UniProtKB/TrEMBL
  ENSRNOT00000118014 ENTREZGENE
  ENSRNOT00000118014.2 UniProtKB/TrEMBL
  ENSRNOT00000124803 ENTREZGENE
  ENSRNOT00000124803.1 UniProtKB/TrEMBL
  ENSRNOT00000164556 ENTREZGENE
  ENSRNOT00000164556.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core UniProtKB/TrEMBL
  Phosphodiest/P_Trfase UniProtKB/TrEMBL
  PIG-O_N UniProtKB/TrEMBL
  PIGO/GPI13 UniProtKB/TrEMBL
NCBI Gene 313341 ENTREZGENE
PANTHER GPI ETHANOLAMINE PHOSPHATE TRANSFERASE 3 UniProtKB/TrEMBL
  PTHR23071 UniProtKB/TrEMBL
Pfam Phosphodiest UniProtKB/TrEMBL
PhenoGen Pigo PhenoGen
RatGTEx ENSRNOG00000009930 RatGTEx
Superfamily-SCOP Alkaline_phosphatase_core UniProtKB/TrEMBL
UniProt A0A8I5ZR91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABT3_RAT UniProtKB/TrEMBL
  A0ABK0LN10_RAT UniProtKB/TrEMBL
  D3ZTP8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pigo  phosphatidylinositol glycan anchor biosynthesis, class O  Pigo_predicted  phosphatidylinositol glycan, class O (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Pigo_predicted  phosphatidylinositol glycan, class O (predicted)      Symbol and Name status set to approved 70820 APPROVED