Stard4 (StAR-related lipid transfer domain containing 4) - Rat Genome Database

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Gene: Stard4 (StAR-related lipid transfer domain containing 4) Rattus norvegicus
Analyze
Symbol: Stard4
Name: StAR-related lipid transfer domain containing 4
RGD ID: 1309475
Description: Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cholesterol transport and positive regulation of steroid metabolic process. Predicted to be located in cytoplasmic vesicle. Predicted to be active in cytosol and endoplasmic reticulum. Orthologous to human STARD4 (StAR related lipid transfer domain containing 4); INTERACTS WITH (+)-schisandrin B; 1-benzylpiperazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291699; StAR-related lipid transfer (START) domain containing 4; stAR-related lipid transfer protein 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,088,831 - 25,104,172 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,091,255 - 25,104,172 (-)EnsemblGRCr8
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1824,944,469 - 24,957,390 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,708,747 - 25,721,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,040,134 - 25,053,055 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)Ensemblrn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1824,564,822 - 24,577,739 (-)NCBICelera
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-benzylpiperazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
Azaspiracid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
DDE  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
difenoconazole  (EXP)
dimethyl sulfoxide  (ISO)
dinophysistoxin 1  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ferroheme b  (ISO)
fluoranthene  (ISO)
fluoxetine  (ISO)
folic acid  (ISO)
furan  (EXP,ISO)
gentamycin  (EXP)
heme b  (ISO)
ketoconazole  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methylmercury chloride  (EXP,ISO)
miconazole  (ISO)
Monobutylphthalate  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pravastatin  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
propiconazole  (EXP,ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sinapic acid  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
Yessotoxin  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytoplasmic vesicle  (IEA,ISO)
cytosol  (IBA,ISO)
endoplasmic reticulum  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18403318   PMID:21767660  


Genomics

Comparative Map Data
Stard4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,088,831 - 25,104,172 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,091,255 - 25,104,172 (-)EnsemblGRCr8
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1824,944,469 - 24,957,390 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,708,747 - 25,721,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,040,134 - 25,053,055 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)Ensemblrn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1824,564,822 - 24,577,739 (-)NCBICelera
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Cytogenetic Map18p12NCBI
STARD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,496,033 - 111,512,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,495,551 - 111,512,590 (-)Ensemblhg38GRCh38
GRCh375110,831,731 - 110,848,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,861,921 - 110,876,056 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345110,861,920 - 110,876,056NCBI
Celera5106,779,623 - 106,793,758 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,012,693 - 106,026,827 (-)NCBIHuRef
CHM1_15110,267,316 - 110,281,451 (-)NCBICHM1_1
T2T-CHM13v2.05112,006,333 - 112,022,835 (-)NCBIT2T-CHM13v2.0
Stard4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,332,191 - 33,346,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,332,408 - 33,346,915 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381833,199,138 - 33,213,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,199,355 - 33,213,862 (-)Ensemblmm10GRCm38
MGSCv371833,361,075 - 33,373,470 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361833,326,232 - 33,338,627 (-)NCBIMGSCv36mm8
Celera1833,649,468 - 33,662,093 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Stard4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)Ensembl
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
STARD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,658,743 - 112,675,165 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)EnsemblpanPan2panpan1.1
STARD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,154,358 - 1,171,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,154,358 - 1,170,469 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha32,557,697 - 2,575,098 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.031,000,098 - 1,017,508 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31,000,155 - 1,016,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13989,528 - 1,006,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03985,874 - 1,003,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031,149,674 - 1,167,056 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stard4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,733,930 - 155,752,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365315,866,021 - 5,877,597 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365315,865,840 - 5,877,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,842,152 - 14,854,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,842,286 - 14,854,702 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603463,619,410 - 63,636,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,282,558 - 29,293,854 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474329,278,327 - 29,298,050 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stard4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11511,076,586 - 11,088,084 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stard4
104 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:354
Count of miRNA genes:205
Interacting mature miRNAs:256
Transcripts:ENSRNOT00000027755
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000027755   ⟹   ENSRNOP00000027755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,091,255 - 25,104,172 (-)Ensembl
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)Ensembl
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117682   ⟹   ENSRNOP00000089557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,093,351 - 25,104,172 (-)Ensembl
mRatBN7.2 Ensembl1824,819,203 - 24,830,024 (-)Ensembl
RefSeq Acc Id: NM_001106159   ⟹   NP_001099629
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,091,255 - 25,104,172 (-)NCBI
mRatBN7.21824,817,107 - 24,830,024 (-)NCBI
Rnor_6.01825,984,638 - 25,997,555 (-)NCBI
Rnor_5.01825,699,344 - 25,712,261 (-)NCBI
RGSC_v3.41825,638,433 - 25,653,958 (-)RGD
Celera1824,564,822 - 24,577,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600918   ⟹   XP_017456407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,088,831 - 25,098,667 (-)NCBI
mRatBN7.21824,814,683 - 24,825,734 (-)NCBI
Rnor_6.01825,982,210 - 25,992,053 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001099629 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456407 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000027755
  ENSRNOP00000027755.4
  ENSRNOP00000089557.1
RefSeq Acc Id: NP_001099629   ⟸   NM_001106159
- UniProtKB: D3Z9I9 (UniProtKB/TrEMBL),   A6J2R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456407   ⟸   XM_017600918
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000027755   ⟸   ENSRNOT00000027755
Ensembl Acc Id: ENSRNOP00000089557   ⟸   ENSRNOT00000117682
Protein Domains
START

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z9I9-F1-model_v2 AlphaFold D3Z9I9 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700689
Promoter ID:EPDNEW_R11213
Type:multiple initiation site
Name:Stard4_1
Description:StAR-related lipid transfer domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01825,997,578 - 25,997,638EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309475 AgrOrtholog
BioCyc Gene G2FUF-7998 BioCyc
Ensembl Genes ENSRNOG00000020468 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027755 ENTREZGENE
  ENSRNOT00000027755.8 UniProtKB/TrEMBL
  ENSRNOT00000117682.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro StarD4 UniProtKB/TrEMBL
  START-like_dom UniProtKB/TrEMBL
  START_lipid-bd UniProtKB/TrEMBL
KEGG Report rno:291699 UniProtKB/TrEMBL
NCBI Gene 291699 ENTREZGENE
PANTHER PTHR47006 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 4 UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PhenoGen Stard4 PhenoGen
PROSITE START UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020468 RatGTEx
SMART START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A8I6AC73_RAT UniProtKB/TrEMBL
  A6J2R7 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9I9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Stard4  StAR-related lipid transfer domain containing 4  Stard4  StAR-related lipid transfer (START) domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Stard4  StAR-related lipid transfer (START) domain containing 4   Stard4_predicted  StAR-related lipid transfer (START) domain containing 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stard4_predicted  StAR-related lipid transfer (START) domain containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED