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Gene: Mss51 (MSS51 mitochondrial translational activator) Rattus norvegicus

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Symbol:

Mss51

Name:

MSS51 mitochondrial translational activator

RGD ID:

1309408

Description:

Predicted to enable zinc ion binding activity. Orthologous to human MSS51 (MSS51 mitochondrial translational activator); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC289904; MSS51 mitochondrial translational activator homolog; MSS51 mitochondrial translational activator homolog (S. cerevisiae); putative protein MSS51 homolog, mitochondrial; zinc finger MYND domain-containing protein 17; zinc finger, MYND domain containing 17; zinc finger, MYND-type containing 17; Zmynd17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,855,094 - 3,868,614 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,855,478 - 3,868,611 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,805,240 - 3,819,385 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,807,516 - 3,819,385 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,817,674 - 3,829,543 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,204,098 - 5,215,967 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,816,491 - 3,828,360 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,240,203 - 4,252,072 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,240,203 - 4,252,072 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,341,460 - 8,353,330 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	4,033,660 - 4,045,529 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	775,583 - 787,452 (-)	NCBI		Celera
RGSC_v3.1	15	4,041,547 - 4,045,564 (+)	NCBI
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

clothianidin (ISO)

cyclophosphamide (EXP)

D-glucose (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

glucose (ISO)

methimazole (EXP)

Moniliformin (ISO)

ozone (ISO)

PCB138 (ISO)

pravastatin (EXP,ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

thiram (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21531385

Genomics

Comparative Map Data

Mss51
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,855,094 - 3,868,614 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,855,478 - 3,868,611 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,805,240 - 3,819,385 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,807,516 - 3,819,385 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,817,674 - 3,829,543 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,204,098 - 5,215,967 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,816,491 - 3,828,360 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,240,203 - 4,252,072 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,240,203 - 4,252,072 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,341,460 - 8,353,330 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	4,033,660 - 4,045,529 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	775,583 - 787,452 (-)	NCBI		Celera
RGSC_v3.1	15	4,041,547 - 4,045,564 (+)	NCBI
Cytogenetic Map	15	p16	NCBI

MSS51
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,423,579 - 73,433,561 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,423,579 - 73,433,561 (-)	Ensembl			hg38	GRCh38
GRCh37	10	75,183,337 - 75,193,319 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,853,343 - 74,863,325 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	74,853,344 - 74,863,324	NCBI
Celera	10	68,468,933 - 68,478,915 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,177,050 - 69,187,032 (-)	NCBI		HuRef
CHM1_1	10	75,465,098 - 75,475,085 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,294,994 - 74,304,976 (-)	NCBI		T2T-CHM13v2.0

Mss51
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,532,925 - 20,546,969 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,532,935 - 20,546,969 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	20,482,857 - 20,496,901 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,482,867 - 20,496,901 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	21,302,086 - 21,316,123 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,271,419 - 19,285,453 (-)	NCBI		MGSCv36	mm8
Celera	14	16,864,286 - 16,878,323 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Mss51
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	18,380,026 - 18,390,840 (+)	NCBI	ChiLan1.0	ChiLan1.0

MSS51
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,599,377 - 85,611,239 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,601,695 - 85,617,707 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	69,971,015 - 69,983,208 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,429,833 - 72,439,963 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,429,833 - 72,439,963 (-)	Ensembl			panPan2	panpan1.1

MSS51
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	23,965,952 - 23,974,053 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	23,966,009 - 23,973,191 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	24,103,748 - 24,111,813 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,246,143 - 24,254,198 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,246,319 - 24,253,381 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,143,664 - 24,151,719 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,344,087 - 24,352,117 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,699,000 - 24,707,057 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mss51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	57,128,998 - 57,133,471 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,617,218 - 5,625,778 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,616,325 - 5,625,647 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSS51
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,239,500 - 76,247,672 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	76,239,497 - 76,247,414 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,365,033 - 82,375,464 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSS51
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,843,295 - 57,854,142 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,849,820 - 57,853,166 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	18,424,693 - 18,436,476 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mss51
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624754	7,032,550 - 7,042,222 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mss51
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	90,290,868 - 90,295,182 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mss51
95 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	20
Count of miRNA genes:	18
Interacting mature miRNAs:	20
Transcripts:	ENSRNOT00000010178
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
1300142	Bp191	Blood pressure QTL 191	3.14		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	15	1	15177511	Rat

Markers in Region

BF397380

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,806,200 - 3,806,325 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,238,888 - 4,239,012	NCBI	Rnor6.0
Rnor_5.0	15	8,340,145 - 8,340,269	UniSTS	Rnor5.0
RGSC_v3.4	15	4,032,345 - 4,032,469	UniSTS	RGSC3.4
Celera	15	788,643 - 788,767	UniSTS
RH 3.4 Map	15	65.8	UniSTS
Cytogenetic Map	15	p16	UniSTS

RH141169

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	3,867,880 - 3,868,375 (+)	Marker Load Pipeline
mRatBN7.2	15	3,818,652 - 3,819,147 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,251,340 - 4,251,834	NCBI	Rnor6.0
Rnor_5.0	15	8,352,597 - 8,353,091	UniSTS	Rnor5.0
RGSC_v3.4	15	4,044,797 - 4,045,291	UniSTS	RGSC3.4
Celera	15	775,821 - 776,315	UniSTS
RH 3.4 Map	15	66.2	UniSTS
Cytogenetic Map	15	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	163	91	90	59	90	59	6	353	189	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010178 ⟹ ENSRNOP00000010179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	3,855,478 - 3,868,611 (+)	Ensembl
mRatBN7.2 Ensembl	15	3,807,516 - 3,819,385 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,240,203 - 4,252,072 (+)	Ensembl

RefSeq Acc Id:

NM_001106025 ⟹ NP_001099495

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,856,744 - 3,868,613 (+)	NCBI
mRatBN7.2	15	3,807,516 - 3,819,385 (+)	NCBI
Rnor_6.0	15	4,240,203 - 4,252,072 (+)	NCBI
Rnor_5.0	15	8,341,460 - 8,353,330 (+)	NCBI
RGSC_v3.4	15	4,033,660 - 4,045,529 (+)	RGD
Celera	15	775,583 - 787,452 (-)	RGD

Sequence:

show sequence

TCACTTCACTTGGAGGAAAGAAGGAAGCAAGCCTAGGGCTTAACAGCATCTGATCCCCAAGCAT
CTGGTCATGGCTCCTCGTTCACGGCGGCGAAAGCACAAGAAACCGCCACCAGTGACTCCCATGC
CTGACATCCCACCCACAGACGTATCTGCAGTACGTCCAGCCCTCCCAGAGCCTGGCCCCAGCAT
TGACGCCCTCGGCTTCATTGCCTTGGACAGCGATGTACCAGGCCTGCCCCAGCGGATCCTGCAA
AGGCTGAACATGAAGAGCTATGAAGAGTACAAGTTGGTGATAGATGGGGGAACCCCAGTGCCAA
GCTTTGGGTTTCGATGTCAACAAGAAATGTTCCAGAGAATGGAGGACACATTCCGATTCTGCGC
TTACTGTAAAGCACTCCCCCATGGCCTTTCCAGTTGCAAGGTTCTGCGGCACTGTAAGAGGTGC
AGAAACGTCTATTACTGTGATGCAGAGTGTCAGAGGTCAGACTGGCCAGCACACAGGAAGGTGT
GTGGAGAGCTCCGTCTCGTGGCTGTGGACCGTGTCATGGAATGGCTTCTGGTCACAGGTGATTT
TGTCCTACCCTCAGGACCTTGGCCATGGCTGCCTGAAGAGATACAGAATTGGGATACCTGGTTC
TCCATGAGGGGTTTACAGCTAGAATCTACATTGAATGCTCTTCTGGGTAGCCATGCTATGACCA
TGCTTTGGGCCAGTCTAGGAAGGCCACGACCAGACCCAGATGTCTTGCATGGCTCTTTGAAGCG
GTTGATGACAGATGTCCTGTCACGGCCTTTGACCCTGGGCTTAGGGATTCGGACTCTGGCGATA
GATGTTGGGAAGACTGGGGGAAGCACATTGCACGTGGTTGGTGCTTCCCACGTGGAGACATTTC
TCATCCGTTCTGGAGATTATGATGAGCTTGGCTACATGTTTCCTGAAAACCTTGGCTTTCGTGT
GATTATGGTGGGTGTAGATGTGAGTGCTGACCTTTTACAGAGTTCCTCATCTTTACCCCTGGAG
CCTGGAACAGTTCAGCTTAGTGGCCACAGGGCCCTGTATCATGACTTCTGGGAGGAGCAGATAG
AGACTGGGAATCTAGCCCATCCAGATTTGGTGGCTGCATTCCATCCAGGTTTCCATGCCTCCCC
AGGCTTGATGGAAGCGTGGCTACCTACCCTGCTGCTCCTTCGTGACTATGAGATTCCAACACTG
ATTACTGTTTACAGCCAGCAGGAATTGGAAGCCTCTTTGCAAGTCCTGGTGAACTTGGATACAC
ACATCATTGCTTGTGGCGCTAATCCTTTCGCATCCCTCAAACCAGAACAGGTCTATTCCAAGCC
CAACAAGCAACCGGTGTACAGCAGTGCCTACTACATCGTGTTTCGTGGATGTTCCTCCTGCCAA
CTAGATAAGCAGCAAGTAGAAGAAGAACCAGATGAATTTTCAGTAGTTGAATCAAATCCTAACT
GAATGCCTGGAAATTGGAAGCTTCAGCAAATTACCCAGTAGATGTCAGATTTTTGCCAGCTGTT
GTATGTGAACCTTATTCACAGTTGAAGTAAAGATTCTAAACCAGTGGAAGTTA

hide sequence

RefSeq Acc Id:

XM_039093085 ⟹ XP_038949013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,855,094 - 3,868,433 (+)	NCBI
mRatBN7.2	15	3,805,240 - 3,819,204 (+)	NCBI

RefSeq Acc Id:

XM_063274068 ⟹ XP_063130138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,855,094 - 3,868,614 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099495	(Get FASTA)	NCBI Sequence Viewer
	XP_038949013	(Get FASTA)	NCBI Sequence Viewer
	XP_063130138	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZKV9	(Get FASTA)	NCBI Sequence Viewer
	EDL86227	(Get FASTA)	NCBI Sequence Viewer
	EDL86228	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010179
	ENSRNOP00000010179.3

RefSeq Acc Id:

NP_001099495 ⟸ NM_001106025

- UniProtKB:

D3ZKV9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAPRSRRRKHKKPPPVTPMPDIPPTDVSAVRPALPEPGPSIDALGFIALDSDVPGLPQRILQRL
NMKSYEEYKLVIDGGTPVPSFGFRCQQEMFQRMEDTFRFCAYCKALPHGLSSCKVLRHCKRCRN
VYYCDAECQRSDWPAHRKVCGELRLVAVDRVMEWLLVTGDFVLPSGPWPWLPEEIQNWDTWFSM
RGLQLESTLNALLGSHAMTMLWASLGRPRPDPDVLHGSLKRLMTDVLSRPLTLGLGIRTLAIDV
GKTGGSTLHVVGASHVETFLIRSGDYDELGYMFPENLGFRVIMVGVDVSADLLQSSSSLPLEPG
TVQLSGHRALYHDFWEEQIETGNLAHPDLVAAFHPGFHASPGLMEAWLPTLLLLRDYEIPTLIT
VYSQQELEASLQVLVNLDTHIIACGANPFASLKPEQVYSKPNKQPVYSSAYYIVFRGCSSCQLD
KQQVEEEPDEFSVVESNPN

hide sequence

Ensembl Acc Id:

ENSRNOP00000010179 ⟸ ENSRNOT00000010178

RefSeq Acc Id:	XP_038949013 ⟸ XM_039093085
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063130138 ⟸ XM_063274068
- Peptide Label:	isoform X1
- UniProtKB:	D3ZKV9 (UniProtKB/Swiss-Prot)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZKV9-F1-model_v2	AlphaFold	D3ZKV9	1-467	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699563

Promoter ID:

EPDNEW_R10087

Type:

multiple initiation site

Name:

Mss51_1

Description:

MSS51 mitochondrial translational activator

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	4,240,201 - 4,240,261	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309408	AgrOrtholog
BioCyc Gene	G2FUF-14540	BioCyc
Ensembl Genes	ENSRNOG00000007632	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010178	ENTREZGENE
	ENSRNOT00000010178.4	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.140.2220	UniProtKB/Swiss-Prot
InterPro	Mito_gene_expr_regulator	UniProtKB/Swiss-Prot
	Mss51-like_C	UniProtKB/Swiss-Prot
	Znf_MYND	UniProtKB/Swiss-Prot
KEGG Report	rno:289904	UniProtKB/Swiss-Prot
NCBI Gene	289904	ENTREZGENE
PANTHER	PROTEIN MSS51 HOMOLOG, MITOCHONDRIAL-RELATED	UniProtKB/Swiss-Prot
	PTHR46920	UniProtKB/Swiss-Prot
Pfam	MSS51_C	UniProtKB/Swiss-Prot
	zf-MYND	UniProtKB/Swiss-Prot
PhenoGen	Mss51	PhenoGen
PROSITE	ZF_MYND_1	UniProtKB/Swiss-Prot
	ZF_MYND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007632	RatGTEx
Superfamily-SCOP	HIT/MYND zinc finger-like	UniProtKB/Swiss-Prot
UniProt	D3ZKV9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-17	Mss51	MSS51 mitochondrial translational activator	Mss51	MSS51 mitochondrial translational activator homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-26	Mss51	MSS51 mitochondrial translational activator homolog (S. cerevisiae)	Zmynd17	zinc finger, MYND-type containing 17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Zmynd17	zinc finger, MYND-type containing 17	Zmynd17	zinc finger, MYND domain containing 17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Zmynd17	zinc finger, MYND domain containing 17	Zmynd17_predicted	zinc finger, MYND domain containing 17 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zmynd17_predicted	zinc finger, MYND domain containing 17 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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