Gpr35 (G protein-coupled receptor 35) - Rat Genome Database

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Gene: Gpr35 (G protein-coupled receptor 35) Rattus norvegicus
Analyze
Symbol: Gpr35
Name: G protein-coupled receptor 35
RGD ID: 1309404
Description: Enables G protein-coupled receptor activity. Involved in negative regulation of neuronal action potential. Located in plasma membrane. Orthologous to human GPR35 (G protein-coupled receptor 35); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G-protein coupled receptor 35; LOC367315
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,974,580 - 100,995,330 (+)NCBIGRCr8
mRatBN7.2993,527,165 - 93,539,573 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,527,127 - 93,539,299 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9101,971,813 - 101,972,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,107,605 - 107,108,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,463,760 - 105,464,680 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,129,428 - 100,141,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,137,881 - 100,138,801 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,781,874 - 99,804,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,258,279 - 92,259,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,463,040 - 92,465,108 (+)NCBI
Celera991,072,466 - 91,073,386 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional G-protein-coupled receptor 35 is expressed by neurons in the CA1 field of the hippocampus. Alkondon M, etal., Biochem Pharmacol. 2015 Feb 15;93(4):506-18. doi: 10.1016/j.bcp.2014.12.009. Epub 2014 Dec 24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Inhibition of N-type calcium channels by activation of GPR35, an orphan receptor, heterologously expressed in rat sympathetic neurons. Guo J, etal., J Pharmacol Exp Ther. 2008 Jan;324(1):342-51. Epub 2007 Oct 16.
5. Identification of novel species-selective agonists of the G-protein-coupled receptor GPR35 that promote recruitment of β-arrestin-2 and activate Gα13. Jenkins L, etal., Biochem J. 2010 Dec 15;432(3):451-9. doi: 10.1042/BJ20101287.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. GPR35 is a functional receptor in rat dorsal root ganglion neurons. Ohshiro H, etal., Biochem Biophys Res Commun. 2008 Jan 11;365(2):344-8. doi: 10.1016/j.bbrc.2007.10.197. Epub 2007 Nov 9.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Kynurenic acid as a ligand for orphan G protein-coupled receptor GPR35. Wang J, etal., J Biol Chem. 2006 Aug 4;281(31):22021-22028. doi: 10.1074/jbc.M603503200. Epub 2006 Jun 5.
Additional References at PubMed
PMID:16934253   PMID:24095869   PMID:25411203   PMID:37423235  


Genomics

Comparative Map Data
Gpr35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,974,580 - 100,995,330 (+)NCBIGRCr8
mRatBN7.2993,527,165 - 93,539,573 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,527,127 - 93,539,299 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9101,971,813 - 101,972,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,107,605 - 107,108,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,463,760 - 105,464,680 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,129,428 - 100,141,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,137,881 - 100,138,801 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,781,874 - 99,804,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,258,279 - 92,259,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,463,040 - 92,465,108 (+)NCBI
Celera991,072,466 - 91,073,386 (+)NCBICelera
Cytogenetic Map9q36NCBI
GPR35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,605,430 - 240,633,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,605,430 - 240,633,159 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,544,847 - 241,572,576 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,217,468 - 241,219,342 (+)NCBINCBI36Build 36hg18NCBI36
Build 342241,288,784 - 241,290,659NCBI
Celera2235,241,148 - 235,243,022 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,301,477 - 233,329,054 (+)NCBIHuRef
CHM1_12241,550,880 - 241,576,585 (+)NCBICHM1_1
T2T-CHM13v2.02241,099,521 - 241,129,422 (+)NCBIT2T-CHM13v2.0
Gpr35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,875,774 - 92,913,984 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,878,587 - 92,914,113 (+)EnsemblGRCm39 Ensembl
GRCm38192,948,052 - 92,986,391 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl192,950,865 - 92,986,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,869,696 - 94,882,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,809,527 - 94,815,938 (+)NCBIMGSCv36mm8
Celera195,921,390 - 95,934,813 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.65NCBI
Gpr35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542851,895 - 856,688 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955542851,895 - 856,688 (-)NCBIChiLan1.0ChiLan1.0
GPR35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,285,391 - 143,316,536 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,300,354 - 143,331,501 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,853,660 - 127,887,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,664,731 - 246,692,467 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,680,998 - 246,692,090 (+)Ensemblpanpan1.1panPan2
GPR35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,566,263 - 50,841,473 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,036,038 - 51,050,997 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,017,995 - 51,032,727 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,016,566 - 51,032,730 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12550,859,957 - 50,874,922 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,605,715 - 50,620,874 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02550,882,551 - 50,897,299 (+)NCBIUU_Cfam_GSD_1.0
Gpr35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,225,123 - 192,226,904 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745993,375 - 994,373 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745993,375 - 994,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,583,769 - 139,591,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,571,093 - 139,591,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GPR35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,653,754 - 126,661,106 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,658,185 - 126,659,114 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604072,735,037 - 72,740,692 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248474,925,516 - 4,945,831 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248474,922,631 - 4,947,098 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpr35
67 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:37
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000036328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 2 21 57 81 82 51 25 51 6 140 65 39 14 30 31

Sequence


Ensembl Acc Id: ENSRNOT00000036328   ⟹   ENSRNOP00000037009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9100,137,881 - 100,138,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107852   ⟹   ENSRNOP00000083273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl993,533,067 - 93,539,299 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114850   ⟹   ENSRNOP00000081235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl993,527,127 - 93,539,299 (+)Ensembl
RefSeq Acc Id: NM_001037359   ⟹   NP_001032436
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,974,580 - 100,986,985 (+)NCBI
mRatBN7.2993,527,165 - 93,539,573 (+)NCBI
Rnor_6.09100,137,881 - 100,138,801 (+)NCBI
Rnor_5.0999,781,874 - 99,804,215 (+)NCBI
RGSC_v3.4992,258,279 - 92,259,199 (+)RGD
Celera991,072,466 - 91,073,386 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245540   ⟹   XP_006245602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,978,475 - 100,995,330 (+)NCBI
mRatBN7.2993,531,065 - 93,539,302 (+)NCBI
Rnor_6.09100,134,182 - 100,141,269 (+)NCBI
Rnor_5.0999,781,874 - 99,804,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084003   ⟹   XP_038939931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,978,476 - 100,995,330 (+)NCBI
mRatBN7.2993,531,066 - 93,539,302 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001032436 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939931 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE48269 (Get FASTA)   NCBI Sequence Viewer  
  EDL91966 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081235.1
  ENSRNOP00000083273.1
RefSeq Acc Id: NP_001032436   ⟸   NM_001037359
- UniProtKB: G3V962 (UniProtKB/TrEMBL),   A6JQX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245602   ⟸   XM_006245540
- Peptide Label: isoform X1
- UniProtKB: G3V962 (UniProtKB/TrEMBL),   A6JQX2 (UniProtKB/TrEMBL),   Q33BM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037009   ⟸   ENSRNOT00000036328
RefSeq Acc Id: XP_038939931   ⟸   XM_039084003
- Peptide Label: isoform X1
- UniProtKB: G3V962 (UniProtKB/TrEMBL),   A6JQX2 (UniProtKB/TrEMBL),   Q33BM1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083273   ⟸   ENSRNOT00000107852
Ensembl Acc Id: ENSRNOP00000081235   ⟸   ENSRNOT00000114850
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V962-F1-model_v2 AlphaFold G3V962 1-306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309404 AgrOrtholog
BioCyc Gene G2FUF-26662 BioCyc
Ensembl Genes ENSRNOG00000024030 Ensembl
  ENSRNOG00000062887 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107852.1 UniProtKB/TrEMBL
  ENSRNOT00000114850.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
KEGG Report rno:367315 UniProtKB/TrEMBL
NCBI Gene 367315 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 35 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PhenoGen Gpr35 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024030 RatGTEx
  ENSRNOG00000062887 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6JQX2 ENTREZGENE, UniProtKB/TrEMBL
  G3V962 ENTREZGENE, UniProtKB/TrEMBL
  Q33BM1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Gpr35  G protein-coupled receptor 35  Gpr35_predicted  G protein-coupled receptor 35 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gpr35_predicted  G protein-coupled receptor 35 (predicted)      Symbol and Name status set to approved 70820 APPROVED