Advanced Search (OLGA)

Gene: Tpd52l3 (TPD52 like 3) Rattus norvegicus

Analyze

Symbol:

Tpd52l3

Name:

TPD52 like 3

RGD ID:

1309391

Description:

Predicted to be active in cytoplasm. Orthologous to human TPD52L3 (TPD52 like 3); INTERACTS WITH amphetamine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100911567; LOC103690131; LOC293894; RGD1309391; similar to RIKEN cDNA 4931412G03; Trpd52l3; tumor protein D52-like 3; tumor protein D55; tumor protein D55-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TPD52L3 (TPD52 like 3)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Trpd52l3 (tumor protein D52-like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tpd52l3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TPD52L3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TPD52L3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tpd52l3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TPD52L3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TPD52L3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tpd52l3 (TPD52 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DHRS7C (dehydrogenase/reductase 7C)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Trpd52l3 (tumor protein D52-like 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TPD52L3 (TPD52 like 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F13E6.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5174	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG5174	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	237,195,695 - 237,197,988 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	237,187,252 - 237,201,603 (+)	Ensembl				GRCr8
mRatBN7.2	1	227,781,173 - 227,785,040 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	227,773,724 - 227,784,467 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	236,184,147 - 236,186,436 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	243,113,832 - 243,116,121 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	235,935,692 - 235,937,981 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	248,187,429 - 248,202,090 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	248,647,170 - 248,649,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	248,195,797 - 248,196,492 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	255,894,623 - 255,897,958 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	233,743,651 - 233,745,940 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	224,928,841 - 224,931,130 (+)	NCBI		Celera
RGSC_v3.1	1	233,857,890 - 233,908,447 (+)	NCBI
Cytogenetic Map	1	q52	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

17beta-estradiol (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

copper atom (EXP)

copper(0) (EXP)

DDT (EXP)

fenfluramine (ISO)

malathion (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

silicon dioxide (ISO)

thioacetamide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Tpd52l3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	237,195,695 - 237,197,988 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	237,187,252 - 237,201,603 (+)	Ensembl				GRCr8
mRatBN7.2	1	227,781,173 - 227,785,040 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	227,773,724 - 227,784,467 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	236,184,147 - 236,186,436 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	243,113,832 - 243,116,121 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	235,935,692 - 235,937,981 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	248,187,429 - 248,202,090 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	248,647,170 - 248,649,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	248,195,797 - 248,196,492 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	255,894,623 - 255,897,958 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	233,743,651 - 233,745,940 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	224,928,841 - 224,931,130 (+)	NCBI		Celera
RGSC_v3.1	1	233,857,890 - 233,908,447 (+)	NCBI
Cytogenetic Map	1	q52	NCBI

TPD52L3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	6,328,375 - 6,331,891 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	6,328,375 - 6,331,891 (+)	Ensembl			hg38	GRCh38
GRCh37	9	6,328,375 - 6,331,891 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	6,318,375 - 6,321,900 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	6,265,808 - 6,269,359 (+)	NCBI		Celera
Cytogenetic Map	9	p24.1	NCBI
HuRef	9	6,283,854 - 6,287,404 (+)	NCBI		HuRef
CHM1_1	9	6,329,148 - 6,332,699 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	6,333,439 - 6,336,954 (+)	NCBI		T2T-CHM13v2.0

Trpd52l3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	29,981,190 - 29,983,420 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	29,981,190 - 29,983,418 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	30,003,790 - 30,006,020 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	30,003,790 - 30,006,018 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	30,078,280 - 30,080,510 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	30,069,787 - 30,072,015 (+)	NCBI		MGSCv36	mm8
Celera	19	30,779,162 - 30,781,392 (+)	NCBI		Celera
Cytogenetic Map	19	C1	NCBI
cM Map	19	24.68	NCBI

Tpd52l3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955434	10,291,418 - 10,293,330 (+)	NCBI	ChiLan1.0	ChiLan1.0

TPD52L3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	118,249,095 - 118,251,637 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	118,255,043 - 118,257,585 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	6,140,212 - 6,143,796 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	6,320,856 - 6,324,404 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	6,320,856 - 6,324,404 (+)	Ensembl			panPan2	panpan1.1

TPD52L3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	27,353,537 - 27,355,204 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	27,353,873 - 27,354,238 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	26,128,637 - 26,130,297 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	28,203,704 - 28,205,364 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	28,204,034 - 28,204,399 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	26,927,919 - 26,929,576 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	26,746,759 - 26,748,416 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	27,415,765 - 27,417,425 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tpd52l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	142,420,019 - 142,421,091 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936539	872,884 - 873,537 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPD52L3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	215,840,563 - 215,842,113 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	215,841,463 - 215,842,606 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	241,396,953 - 241,398,128 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TPD52L3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	73,170,637 - 73,174,919 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	61,546,934 - 61,549,819 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tpd52l3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	30,106,363 - 30,108,638 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tpd52l3
39 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	234
Count of miRNA genes:	154
Interacting mature miRNAs:	169
Transcripts:	ENSRNOT00000015016, ENSRNOT00000066891
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	243666627	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	11	37	149	89	85	42	95	42	12	314	174	9	117	68	107	43	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015016 ⟹ ENSRNOP00000015016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	248,647,170 - 248,649,962 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000066891 ⟹ ENSRNOP00000059116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	237,195,574 - 237,201,603 (+)	Ensembl
mRatBN7.2 Ensembl	1	227,782,163 - 227,784,467 (+)	Ensembl
Rnor_6.0 Ensembl	1	248,195,797 - 248,196,492 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099261 ⟹ ENSRNOP00000096786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	237,187,252 - 237,197,986 (+)	Ensembl
mRatBN7.2 Ensembl	1	227,773,724 - 227,783,944 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121822 ⟹ ENSRNOP00000106320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	237,195,574 - 237,198,850 (+)	Ensembl

RefSeq Acc Id:

NM_001106349 ⟹ NP_001099819

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	237,195,695 - 237,197,984 (+)	NCBI
mRatBN7.2	1	227,782,171 - 227,784,460 (+)	NCBI
Rnor_6.0	1	248,195,719 - 248,198,008 (+)	NCBI
Rnor_5.0	1	255,894,623 - 255,897,958 (+)	NCBI
RGSC_v3.4	1	233,743,651 - 233,745,940 (+)	RGD
Celera	1	224,928,841 - 224,931,130 (+)	RGD

Sequence:

show sequence

GATCCCCATCAAAAGCGTCCCATCCTCTCGACAGGACGTAGACTTATCAACCAGTGCCTGACTT
TTGCTGCCCAAGATATGGACCCGTCTCACCTCGAGTCCCATCCCTCTGGCCAGAAGTCTGAGCC
TGCAGGCCTAGACGTTAGCTCCACCAGCCCTAACTGTTTCTCCTCAAACCAAGGACTGGATTCT
GTCTATCAAGAACTGGACCTGGACTCCCTGAACGAAGATCTTTCTTTGTCTGTTTCAGATGCCA
TGACAGAGACCTCTGCATCCACAAATGAATTCCACCTAGCTTCAGAACCAGATCTGACGGAGGC
TGAGCAAATGGAGCTCAGATCTGAGCTTACTAAATTGGAGGAAGAGATCTTAAGCTTGCGTGAC
CTGCTCGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGGCCTTGG
TGGGACTGAGGCAGAATCTGTCCAAGAGCTGGCATGATGTTCAGGCCTCCAACACCTACATGAA
GCAGAAGACTTCAACTGCCCTGGCCTCGATGGGTTCTGCCATCTGCAGGAAGCTTGGAGACATG
AAGAAGTCGTCCACGTTCAAATCTCTTGAAGAGCTGGTGGGGACAGTCAAGTCAAGAGTCGCGG
GTGGCAGAGAGCTCGGCAGTGGCCTTCTTCCTTCACCAGCGAGTGGCAGCGATCCACACTCGGT
TCTGGGGAGTGGATATGAAACTGTTTCAGGGCTTGATGATCAACTGTTTTCTCTCCTGAAGCCA
GAGTAAGCCCTTTGTTAGCCTTGCTTAGCTGCCAAACCTGTATATATAGCCCTTCTTCCGTCAT
CATACTTGCCAAACAAAAACAAGCAAACATTGAACAATGGTAAAGCTATTATAATTCTGGACAT
AGATACAGTCCAGTTTTGATAACAAGAATACCCATTTTGCATAGATATTTGCTGCTCTTAAATG
GGAAAGAAGCCCAAGTTTGAACTAGTTATTAATACTGAAGTTTGTAGAAGAAACATATCTCTAT
GTTAGCTTTTCTGTGGTTACTTTTAATGGACTCAGTAATGGCTCCCAGGGATCTTAGGCCAGAT
CCTAAACTCTTTGAAAGATTAGTCGATTAGAAGGCAAACGAAATTTCTATCTGGGATTGGGAAA
AGGTGGGAAGTAACCTGGCTAGATATTCTGCAAGCACCATTTTCTACAAACACCACTTGACCTA
CAACCTTTATTGTAGTGCAGTGTTGGGGATGCAGTCCAATGATTCACATATCCTGTACAAAGTC
TCCTGAGCTACCTCCCTGTCACCACAGCTTTTATTTTTTAAAACAATCAAGAAAACTGACCATC
TTAAAGCTGCCGGGAAAGAGAAAACATATTAGCCACTAATCGTTACTCTAAAGCTATACATTTT
ATAAAACTTTCATTTTTTTTTCAAAGTGGCCAATTCAGCAAATCGACTTAGCTTTAATTCGGGA
GATTATGATTTTGGACTCAAAGTGAAAACGCTAATTTACATTACCTGTACATTTTCTCTATTTG
AATATTAAAGTTGTGCTTTAAAGTTTCACCCTTGAGGCGGCGTGTCTTCACCACCAGCTGCATC
TCATTCTGCAGCAGTTGCCAATTAGTAACCACCTTCCGCTAAGGGACAGGAGGGATACAATGTG
TCCAGATTTAAGAACTATAAGCCTCCACCCACCTCCTCTTAAACCTTTTGAAAAGAATACCAGT
CCCCTGTAATGCTGACTGCTATGACTTTGAACTAGCCTTATGGAATACACATCACTCTTCTGGT
TGGCTCTAAACCTGCCTGTTTTTAACCTCAACTCGGAAGGAAGAACCCAACCCCCCCCAAGATC
AATAGGAATCTGTAGGAACTCGGTTTGAGTTTGTTCAAGCTTTCTTATGTCCCACTTCCACAGG
AACTGTGTTTTGTTTTTGTTCTATGTTTGTGTTTTGTTCCTTATTTTCATCTTTTAAAATCCCC
ATCCCAGCAGCTTCCTTCTTTCCTCCCACCACACTGTCTGAAATAGGAGCTAGTATAGCCTTGA
ATGGCAGCCGTCCACTGTTAGCTTGGGTACATTTCAATAACCTGTCATTGCCTACAAGTGCTAG
TACCCGATCCTGTGTTGCTATTTCTTGAATGTTTTTCTTACATTCCTTTTGTTCTCCATAGTGA
AACTAAATACTGCTGTCAATATAGAAGATCTCGGTAAACTGTAAAGCCATTGAAAAATCCCAGC
CCTCGACTGAGTCCCAAAGGCCATGTCTTGCTTGGATTAAAACAAATTAT

hide sequence

RefSeq Acc Id:

XM_006231260 ⟹ XP_006231322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	237,195,708 - 237,197,988 (+)	NCBI
mRatBN7.2	1	227,781,173 - 227,785,040 (+)	NCBI

Sequence:

show sequence

GTGTCTGTGTGTGTGTGTTACCTGATTAACCTTGTCAACTTGGCATTCTCTAGAATTATCTGGG
AAGAGAATCTAAACGGATGCTTTGTCGAGATCAGATTGACTTGTAGATATGTCTGTGAGGGATT
GTGTTGACTGTTAGTTGATATAGGAGGACTCAGCCCACTGTAGGCAACCCCATGCCCTAGGCGG
GTGGTCCTGGATTGTATGTAAATGCTAGCCCAGCAGAAACCTGCCTGTTAGCTGGCCAGCAGCA
CCTTCCATGCTTCCTGATCTGCTTCCTTTGTTCTAAAGTAAGTTTCTTCCTCAGTGGTAATGTT
GTGTGAAGTCATTTAAGTTCTTTGAGTGCCTTCAAGTTCTGCCTTAACTTCCTTTAATAATGCA
CTGGGCCTGGAGTTGTAGGCCAAATAAGCCCTTTCTCCCACAAAGTAACTTTTAGTCATGGCGT
TTGTCACTGAAACAAATGAAACTAGAAAAGTAGATAACTTTTATGTGTGCAACTGAGTATAATG
TATTATGTATATGTGTGATGCATGGTATATGTATATAATATGTATGTGGTATGTGTGTGTTTGT
GTGCACATTAATGTGAGTATAGGTGTGTGCATGCCAAGACACATGTGGCAGTCACAAGGCCACC
TTGGAAGTCAGTCTTTGCCTTCCTCCTTGTTTGAATCAGGGTACCTTCGTTTTGCTCACTATTG
AATGTGCCCAGTTAGGTTTCGCTGTAGGATCACTGAGCTCAGCTTTTTCATGGGTTCTGGGGAT
TCGAATCAGGTCTTCAAATTTGTTCAGCAAGTACTTTATCTGTTGAGCCATCTCCCTGGATGCC
TAATGTTTCTGCACTTCCCTCTCAAGAACATTGACGTTGAAGTAATGTGAAAATATTAACGATT
CCTGGGACACTGTTGGTAAACACTACCTGTCTCCGTTTGCTGTTTTTTTCTTTTTAAAGTTGGA
TTTCATGGTGGCTTCTCCATACAGAAATACCGATGTATTCTGTTCTTCTTCCATTAGTTTTATT
ATCAGAGCAGATATAAACAAAAAGTCAGTTCCTAATCTGTTTTTTCTTTCTTAGAATAGGAAGA
AAAATAAAAGTCTCATCTACATTGTAGTAGGACCCAAACAAAGGTGTTGATGTCCCCGTGACTG
CAGATGGCTGCATCACTACCATGTTTCGCCATTTTAAAAATACAGATTTTGTGACATTTTAGTG
TTCCTAAAATTAGAATTTCATCTTTTAAAAAAATCAACGTACAACTTAAAATTGTTGGGTTTTC
CTTCTAGAAACTGCTTTTTAAAACGAAGCTGTGTCTTGTAACTGATTGTGCCCCAGGATTGAGG
AAATAAAATAATTATTATGCTGCTGTCATCGCACGCACGACTGTTCTAAGACAGGAATGGCTTA
AGCTGCCAGGCACTGCACTCCAGGATGCAGTGCATTTTTGTCTTTGTCTTTTGGTATTCCGGCA
AACCTGCCACAATGATCACAACCGTAAAAGGTTTGGAAATTCCATTAATAACCTTTATATCTTC
GTGCCCCTACAGCCTTGGATGCATGGAAGTTAGATTGCTTTGGCCCCAATTTGCTGGCTCTAAC
CCCTCCATGCAGAGCCTCGGGACTTTAGCATACGGGCATGATATAAATGCTGTTCACGCGTGCC
CGCACACAACCCCCACTCCAGTCTCCTAGTTACTTCTGGGAGTCCTCCTCACTCAGAATTAACC
CTTCCATGTCCATTAACCCTTTCAGTTCTCTTCTCTAGGCAGATAAACACCCTGTACCCAGCCA
CTTAAAGACACCTCCTCCTGCCACTCCAGACCCTCCCCTGACAGAACCCGGGCCTCCCGGTATT
CATAGCCTCTAGACAAAGTTTCTTCTTTAACTAATGGGTCACACATACGGAAAATTGCCACTAG
CTCCCTTGATTGCCTCTGGCCCTCTGTATGCATTCCAATAGGGTGTCGGCAAAGCGTAGGTTAG
AGAGGACAGTGAGAACCCAATAGCAATTCACATGGCCAACCCCCTGCTCCCTTCTAACTAAGTC
GTCCTGTGATTTTCAAGATCCTAAGTAGAGAAATGTGTCATGCTTGGTTCTTTCCTGGGCAGAG
GCTGACCACCTCTACCAACCTGCATCTCATAGAGCAAGTCTTCTCTGACTCACAGGACAGCTTT
ATTCACAGCCTCCTTGTATTGGCCTGAGAGCTTCTTTTCAGCAATACTGTCTGTCCTATCCCAG
TACATAAAGAGGAAACTTGGGTCAAAACATGTGGGCAGGCAGGATCTCTAGTTGAGGATACTGC
TTTCCATTTATAGTCAAGAATGTTTATTAATAAAATGTAGAGGTTTCTACACGTGACAGGATTT
TTTTTTCTTTAGAGTTTCATTTCCTTTTTACGTTTGGAGGGACTTTTTATGAACCCATCCTTCT
TACTGGGTAAATAACTTCAAAGTTTTTTCTTTAGTAAATGTAGGTCAAGAGCAGCTTCAGCCTC
GTTACCAACAAAAGATAGGAAAACCACAGGTGCCGGAACTGATTTCTGTCGCTGTCGCTGAAAC
AGATTCAGAAAGCTTGCAGTTTCTTTTCTTTTTATGTCACTTCACTGTTGGGCATTTTCAAACC
TTAAAAGAATAGATTTTGGAAACAACCGATTGGGTCCCTGTAAACTACATGAAGTTTTGTTTAA
TGGAGCTATTTCAAAACGTAAATGTTTTCAATGCGGTTAAATGTAAGCCTAATAAGACAAACTG
TTCCAGGACAGCACCAATCAATAAGGTGAGAACGCTCCAACGAGGAGCCCTCCTTTGAGACGCC
ATGTCTTGATATGGGATCCGGAAAGCAAGGTTTAGAAATGGGCCAACTCAGTTTTGATCTGTGG
GGGGGGGGGGGGAATTACTGCGTCAAATAGAATCAAAGCTAACAAAGAATTCATGTTTTTAATT
GAAGAGCCGGGGAACATATATACAAGGAGACGGACAGCCAGGGTGGTGGTCAGAACAATCCAAA
GAAGGGAAATCGAATGGCAATTTAGAGCCAGTAATTTGAACTGTCCATTCTAAAGGATCAATGT
GTGATCCATGCTAGCTACTTAATCCAGGGGATTTAAAAAACAAACAAACCCTGTTAATTACCAG
TTGAGAATAAGCAGAGTGTGGTCAGAGTCTGGACATAGTCTTGAAACCACCGGAGTTTGAACAG
GCAAAAAGGAGGGAAAGTTTATCCAGGAACAAAATGGCATTTGGGAAGGTGTTGCTTTTCATTT
TCACACCTTCATACCTGCAGCCAAATCCCACACCAGCCTTCATGCTCCCAATAGGAACAATTAT
GATTTTTAATTTATTATTTATTTTATAATTATATAATATATAAACTATAATTTATAATTACCTC
TGAGCTAATACAACAATAAGCACTACTGGGTTGTGAGAAAGGGTTGAAAGAGGACTGAAGTTGC
CTTAGATGCAGACACACAGACGTGAGTATAGCAAGTTCCTGAGGTGTGTGGAGGGTTGTGTTGT
ATTCCACAATGTAAAGCTTGCAAGGACGACTAGAATATCCAAGAAGATCACTGAGTCTAAGAGT
TCACCAAGGGTACTCCCTGGGAACAGGCAGCCGAACAAGGATCTATATGACACCTGACACAGGC
CCTCCCCGGGTTAACATCCTGATTGTCTGGGGCGCCAGATAATTTGGTGTGAACACTTGGCCTG
GGTCATTGCTGCTAGAGGAAAAGAAGTGTCTCTCAGTAATAATCCGGACTCTGCTTGCCTCACA
AGGTCCTTGTGATACAGAAACAATCTCCTGGAACACATCCATAGAGCAGTCAGAAATGGAGATA
GGTGTCAATGACCGCCAGCCCTGCGGGCCGGAAGTCCCACCCCTGAGGCTTGCATCTCGCCCAC
ATCCAACCCCTACAACCCGGAAGTGGATCCCCATCAAAAGCGTCCCATCCTCTCGACAGGACGT
AGACTTATCAACCAGTGCCTGACTTTTGCTGCCCAAGATATGGACCCGTCTCACCTCGAGTCCC
ATCCCTCTGGCCAGAAGTCTGAGCCTGCAGGCCTAGACGTTAGCTCCACCAGCCCTAACTGTTT
CTCCTCAAACCAAGGACTGGATTCTGTCTATCAAGAACTGGACCTGGACTCCCTGAACGAAGAT
CTTTCTTTGTCTGTTTCAGATGCCATGACAGAGACCTCTGCATCCACAAATGAATTCCACCTAG
CTTCAGAACCAGATCTGACGGAGGCTGAGCAAATGGAGCTCAGATCTGAGCTTACTAAATTGGA
GGAAGAGATCTTAAGCTTGCGTGACCTGCTCGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAG
AGGAAGTTAGGCTGCGTGGCCTTGGTGGGACTGAGGCAGAATCTGTCCAAGAGCTGGCATGATG
TTCAGGCCTCCAACACCTACATGAAGCAGAAGACTTCAACTGCCCTGGCCTCGATGGGTTCTGC
CATCTGCAGGAAGCTTGGAGACATGAAGAAGTCGTCCACGTTCAAATCTCTTGAAGAGCTGGTG
GGGACAGTCAAGTCAAGAGTCGCGGGTGGCAGAGAGCTCGGCAGTGGCCTTCTTCCTTCACCAG
CGAGTGGCAGCGATCCACACTCGGTTCTGGGGAGTGGATATGAAACTGTTTCAGGGCTTGATGA
TCAACTGTTTTCTCTCCTGAAGCCAGATGAAACTAAATACTGCTGTCAATATAGAAGATCTCGG
TAAACTGTAAAGCCATTGAAAAATCCCAGCCCTCGACTGAGTCCCAAAGGCCATGTCTTGCTTG
GATTAAAACAAATTATACAAGTCTTTTGCAAGTTTATTTCTTTGTTTATTATAATTATAATAGT
GCTGGAGGATAAAAGACAAATCAACAACAAGAAAAAGTGAAAATTGGCCAATGGGCAGGGACCT
ATAGGTCAGAAAGGATTGAGTTGTGAAGTCTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCGGAG
CTAGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCC
AACCCCGAGTTGTGAACAATCTTAATGATACCGTGGGCCAAACCTGAAAGACATTCTCTTTTAT
TTAATAGCTCATAAGAATGATAGGAATTTTTTCAAATAATTTTTTTGAAATGGAGTCTCACTAT
ATAGCAACCCATGTGATTTACCTGCCCTAGACTTCTAAGTACTGGGACTACAGGCAAGTATCTG
ATGTTCAGGCTTCCCTTCTCAGTAGCCTGATTAGCTGTGGATTCTGAGAGGGGAAGCAAGGCAG
AAGCTCAGGCAGACGGTGAATGCGGTGAGAACAGAATCTCGGGAGGCAGCTTCAGTGAGACAGC
TCATTTTAGTAGGGGGACAAAGGCTATTTATTAAACCCTTGTAGGATGAGTAGAGGCTTTAGGG
TGAATGTGCATCATTGGCCAGGGCCAGGGTGCTTCGGATGCCTCATTTGCATAGGGAGGCCCTC
CAGGTACTGCAGCACATGACTTTAGACTGGGAGAGGATGTTTAACCTGACTATCCAGCTTTGTG
ACCTTCTCTGGTGGGCAAAGGCCGGTGCGAACTGCTACTGGTTCTAGGACACACAGGCCAGAGG
CAGGGGCGTAGCAATCCTACTCCTGCTGATCTCAGGACAGGATTTCTGGAGTTTGTACACGACT
CCACCCCACTCGTGCTGCAGGCCCGCTCCCCTGAGTCCCACAGTTCCCAGCCCCACGTGGACCG
CTGTGCCTGAACACCTTCAAGAAATTCTCAATTCTCTGAAAACAGTGGAGCATATTTCTGATGT
TGTTGGTGAGTCATTATCCTACATGTTTAAGTTAAAGTAAATCTTCAACAAAATCTTATTAAAA
TAATGGAAGAATATCACAAATTTAGATATCAAATCTTGGATCCAAGAGATTATTAACAACTAAC
TGGCTGACAGGATCTTTTTTTATTTTTTTTTTAATTTTTTGAGGCATTTTAGGTATTTGAAGAC
AAATGGGCTTTCCTATATGTTAGGAGCTATGCCCAGGTCCTGGGGATAGAGGTTAAGTAGACAT
TGTCCACCTTCTTTAAAAACACTCAGCTTCTCGAATCATGGGCTCACACTCTGGTAAGTGCCTA
CACAGACACGTGTGCCACAGATGAAGGGAAACTCTGGAAGATTGTGTTCGATTCTATCTTGGAA
GGTCAGTAAAGATTATATAGAGGCATCTGTGATGGCTACTGTACTTGGGACTCTGAGGCAGGGG
ATTAAGAACTTGAAGCCAGCCTGGACTATGTCTGGTGTCTGGAGGGAAATGAACACACTTCACA
GGAACATAAAATCTTAAAAAGACTAGAAGTTTGCCAGACAAGTGTAAGTAGAGTATCTATACGG
TGGGCAGAAGAACTGAGCCACAAAGGGATGCACCAGTAGACGTATTCCAGGAAATACCTGTACA
CAGTCATTGAGGCCAGAAAGGAGGGCTGCTGAGCAGTGAGGGTAGAGAAGCAGGCACAGAATCA
TCAGTCCGTAGTCCTCTACAGCGAGCGCTTCAGGCAGCAGGACTTAACTCTGAAGGAAATAAGG
CAGGAGCGTAGCACTTCAGTCAGAAGGGAACCGTCACAGAGAAGTACTTTGAGAAATGTTGTAG
AGAAAGAATCTCGCAGGCTGAGGAGCCAACATCCTGGAAGAGACAGATGAATACATTTGCAAGA
TAAAAAGAATGTCCAGTTATGAAATGGAAGTAGTATATTCATTTTTGTTTTAAATGGATTCCAG
CATATCTGAAACAGAGTGTGTGTAGTGGGGGGAGGCGGTCATGGTATAAAACGCCTCTTCACAA
ACATGAGTTCCATTTATAAAGGTTTGTCTCCATTTCCATTTTTTCCCATCTGCTTCTACCACAT
GTGCTGGGTCCCCTCTGCTCTTTGTCTCATATACCTTCATAAGCCCCTCTTAGGCCTTTGGATT
TTGTGGTTTAACCTAGATTGATACTTCTAAGATGCAATTTCCAACAATTTCTGGAATATATGTA
CACTCAAAGATTCCTATTCCTAAATTTGCTCAACCCTGAAAAGCACTGGCTGCAGGATATTAAA
CCAAGTCCCCAGGGCTTTCTACTCTCTGACCTTGCATCACCCATACAAGCAGGAAGATTAGAAA
ATAGAGATTAGAAGACGCCCTAAACGGCCATGGCCTCCCCCATCCTATGTTGAAACCCTAACTG
ACATGATAATACTGTAGAGAGGTGATTAACTCTCATATCTTGTAAGTGGGATCAAGGACACATC
TTTCCACTGTGAGAAAACACAATAAAAAAGTCACCATCTATGGATCAAGAAACAGTTTGTCTTC
TGCCTTAGTCTTGGGTTTCTTGATCTCCAAAACAATGAGAAATATAGTTCTATTGTTTAGAAGC
CAGTTTACAACGTTTTATTATCACAGCTTGAATAAACCAAGACACAAGAGTTGAATGTTTTGTC
TCACAGGGTCACATGTTCCATGGCCATGGCAAAGACAGGGCTAGATGACCATGCCTTGCAAGAA
GAGTGGAAAAGCTATGGAAAACCTAAAAGACAAGAAATCTAGAGCTGAACTGTTCTGTCAACGG
ACTGAAAATGAATTGCAGAGACTCAAAGGAAGATCTACCATGAAAAAAAATCTACCTGAAGAAT
GAAATTATTACTGACTCTGGAAGGAAGTGAACAAAGACCAAGGGTGGTGGGATGTTGTCAGTAT
ACACACTACGGGAATTCCACAGGAAGAAACGATGGAAAAGAAACAGGAGAAAGAGGAAAAACAG
AGGAAGAAATGCCACATTGAGGCAAAAATCCTCAACAGAATATTTGAAAAAATTCTAGAGAACA
TTGAAAATCATGATTAAGTTGGTGTTGTAATCCAGGGATTCAAAGATATTCAACATAAAAATTA
ACAAACATGAAACAGCATGTAAATAGAATCAAGTGTAAGATCACAGATCATCTCAATGCATGAA
AAAACATTAGAAGGAGAAGGAGCAGAAAGGAGTGGGCAGAGAGAAGACAACAGTCAAATAATAA
TGAGAAGCACAAACATATGTGCCCGAGATCAACAAGCTTCAAAGTAGGTGAATTCTAAGAAGTT
CACCCCAAAACACATTATCCTCACACTTTTCAAAACCCCAGAGACTGTCAAAAACAGGAAGTAG
GCAGCTTGTTTCATAAAGGGGATAGAAACAAAATCATCAGAGATTTCTGTTCAACTCTGGAAGT
CAGAAAGCCCCTGCTGTAAAAATACTATTAAGGGCTGATGAGACAGTTCAGTGGGTAGCAGGGC
TTGCTTTCCAAGCCTGATGACCTAAGTTTGATTCCCAGAATCCACATGGTGGAAGGAAAGAACA
CACTCCCACAGGTTTGACCTCTGCGTGCTTGCCACAGAGACTCGTTCACACACATACACACATA
CACACACACACGCGCGCGTGCGCACACACACACACACACACACACACGCACACACGAAACAAAC
TGCAGACCAATATCTTTGTTGACATTGATGTAAATATCCTCAACAAATTCATGGCAGGATGAAT
TAAATAGTATGTTAAAGGATTGTGTACTATGATCAAGCGGGACTTATTTCTGAACTACAAGGAT
TTGGTTCAATATTTAAAACTTTGTCAATAATCACCTCAACTAATGCCAAAAAAAATACATGTGA
CAAAATTCAATGTCTTTTGTGGTTTAAGAAAACACCTCAAAAATTAGGAATAAAATCAAATTAC
CCAACAGAGTAAAACCATATTTGAAAAACCAACAGCAACAATGTGGAAAACTGAGCACTTTTCC
TCGAATCCTGTGGCAGAGCTTGAGGGAGTTATGGACCCTCTGAAGGGAGCTTGCCTGTTCACCA
TC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099819	(Get FASTA)	NCBI Sequence Viewer
	NP_001424473	(Get FASTA)	NCBI Sequence Viewer
	XP_006231322	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13108	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059116.4
	ENSRNOP00000096786.1
	ENSRNOP00000106320
	ENSRNOP00000106320.1

RefSeq Acc Id:

NP_001099819 ⟸ NM_001106349

- UniProtKB:

A6I0X7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDPSHLESHPSGQKSEPAGLDVSSTSPNCFSSNQGLDSVYQELDLDSLNEDLSLSVSDAMTETS
ASTNEFHLASEPDLTEAEQMELRSELTKLEEEILSLRDLLAAKEKRCGELKRKLGCVALVGLRQ
NLSKSWHDVQASNTYMKQKTSTALASMGSAICRKLGDMKKSSTFKSLEELVGTVKSRVAGGREL
GSGLLPSPASGSDPHSVLGSGYETVSGLDDQLFSLLKPE

hide sequence

Ensembl Acc Id:

ENSRNOP00000059116 ⟸ ENSRNOT00000066891

Ensembl Acc Id:

ENSRNOP00000015016 ⟸ ENSRNOT00000015016

RefSeq Acc Id:

XP_006231322 ⟸ XM_006231260

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDPSHLESHPSGQKSEPAGLDVSSTSPNCFSSNQGLDSVYQELDLDSLNEDLSLSVSDAMTETS
ASTNEFHLASEPDLTEAEQMELRSELTKLEEEILSLRDLLAAKEKRCGELKRKLGCVALVGLRQ
NLSKSWHDVQASNTYMKQKTSTALASMGSAICRKLGDMKKSSTFKSLEELVGTVKSRVAGGREL
GSGLLPSPASGSDPHSVLGSGYETVSGLDDQLFSLLKPDETKYCCQYRRSR

hide sequence

Ensembl Acc Id:

ENSRNOP00000096786 ⟸ ENSRNOT00000099261

Ensembl Acc Id:

ENSRNOP00000106320 ⟸ ENSRNOT00000121822

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQZ6-F1-model_v2	AlphaFold	D3ZQZ6	1-243	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309391	AgrOrtholog
BioCyc Gene	G2FUF-55948	BioCyc
Ensembl Genes	ENSRNOG00000011304	Ensembl
	ENSRNOG00000042441	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066891.4	UniProtKB/TrEMBL
	ENSRNOT00000099261.2	UniProtKB/TrEMBL
	ENSRNOT00000121822	ENTREZGENE
	ENSRNOT00000121822.1	UniProtKB/TrEMBL
InterPro	TPD52	UniProtKB/TrEMBL
KEGG Report	rno:293894	UniProtKB/TrEMBL
NCBI Gene	293894	ENTREZGENE
PANTHER	TPD52	UniProtKB/TrEMBL
	TUMOR PROTEIN D55	UniProtKB/TrEMBL
Pfam	TPD52	UniProtKB/TrEMBL
PhenoGen	Tpd52l3	PhenoGen
RatGTEx	ENSRNOG00000011304	RatGTEx
	ENSRNOG00000042441	RatGTEx
UniProt	A0A0G2QC54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B4S5_RAT	UniProtKB/TrEMBL
	A0ABK0LVN2_RAT	UniProtKB/TrEMBL
	A6I0X7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Tpd52l3	TPD52 like 3	LOC103690131	tumor protein D55-like	Data merged from RGD:9223097	737654	PROVISIONAL
2018-08-21	Tpd52l3	TPD52 like 3	Tpd52l3	tumor protein D52-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Tpd52l3	tumor protein D52-like 3	LOC100911567	tumor protein D55-like	Data merged from RGD:6491856	737654	PROVISIONAL
2014-08-25	LOC103690131	tumor protein D55-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-05	LOC100911567	tumor protein D55-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-12-15	Tpd52l3	tumor protein D52-like 3	Trpd52l3	tumor protein D52-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Trpd52l3	tumor protein D52-like 3	Trpd52l3_predicted	tumor protein D52-like 3 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Trpd52l3_predicted	tumor protein D52-like 3 (predicted)	RGD1309391_predicted	similar to RIKEN cDNA 4931412G03 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309391_predicted	similar to RIKEN cDNA 4931412G03 (predicted)	LOC293894_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC293894_predicted	similar to RIKEN cDNA 4931412G03 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message