Mical1 (microtubule associated monooxygenase, calponin and LIM domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mical1 (microtubule associated monooxygenase, calponin and LIM domain containing 1) Rattus norvegicus
Analyze
Symbol: Mical1
Name: microtubule associated monooxygenase, calponin and LIM domain containing 1
RGD ID: 1309386
Description: Predicted to enable several functions, including FAD binding activity; NAD(P)H oxidase H2O2-forming activity; and enzyme binding activity. Predicted to be involved in several processes, including actin filament depolymerization; regulation of regulated secretory pathway; and sulfur oxidation. Predicted to be located in several cellular components, including endosome membrane; hippocampal mossy fiber expansion; and midbody. Predicted to be active in actin filament. Orthologous to human MICAL1 (microtubule associated monooxygenase, calponin and LIM domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: [F-actin]-methionine sulfoxide oxidase MICAL1; [F-actin]-monooxygenase MICAL1; F-actin-monooxygenase MICAL1; LOC294520; MICAL-1; microtubule associated monoxygenase, calponin and LIM domain containing 1; molecule interacting with CasL protein 1; NEDD9 interacting protein with calponin homology and LIM domains; NEDD9-interacting protein with calponin homology and LIM domains; Nical; protein-methionine sulfoxide oxidase MICAL1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,547,983 - 46,568,487 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,556,536 - 46,568,487 (+)EnsemblGRCr8
mRatBN7.22044,974,137 - 44,986,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2044,974,138 - 44,986,089 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2046,691,647 - 46,703,594 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,341,822 - 46,353,769 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,048,455 - 47,060,565 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,199,981 - 46,211,930 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,199,981 - 46,211,930 (+)Ensemblrn6Rnor6.0
Rnor_5.02047,892,301 - 47,904,250 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,436,685 - 45,448,634 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,967,522 - 54,979,475 (-)NCBICelera
RGSC_v3.12045,458,091 - 45,471,641 (+)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
cantharidin  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clothianidin  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyanocob(III)alamin  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glycine betaine  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methamphetamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorodecanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. The MICAL proteins and rab1: a possible link to the cytoskeleton? Fischer J, etal., Biochem Biophys Res Commun. 2005 Mar 11;328(2):415-23.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11827972   PMID:16230022   PMID:16275926   PMID:18094055   PMID:21638339   PMID:21730291   PMID:21864500   PMID:23911929   PMID:24440334   PMID:25007825   PMID:26845023   PMID:26935886  
PMID:28230050  


Genomics

Comparative Map Data
Mical1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,547,983 - 46,568,487 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,556,536 - 46,568,487 (+)EnsemblGRCr8
mRatBN7.22044,974,137 - 44,986,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2044,974,138 - 44,986,089 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2046,691,647 - 46,703,594 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,341,822 - 46,353,769 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,048,455 - 47,060,565 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,199,981 - 46,211,930 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,199,981 - 46,211,930 (+)Ensemblrn6Rnor6.0
Rnor_5.02047,892,301 - 47,904,250 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,436,685 - 45,448,634 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,967,522 - 54,979,475 (-)NCBICelera
RGSC_v3.12045,458,091 - 45,471,641 (+)NCBI
Cytogenetic Map20q12NCBI
MICAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,444,062 - 109,465,968 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,444,062 - 109,465,968 (-)Ensemblhg38GRCh38
GRCh376109,765,265 - 109,787,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,871,958 - 109,883,883 (-)NCBIBuild 36Build 36hg18NCBI36
Celera6110,511,849 - 110,523,786 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6107,331,351 - 107,343,303 (-)NCBIHuRef
CHM1_16110,028,348 - 110,040,287 (-)NCBICHM1_1
T2T-CHM13v2.06110,622,100 - 110,644,006 (-)NCBIT2T-CHM13v2.0
Mical1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,351,693 - 41,363,026 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,352,310 - 41,363,028 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381041,475,860 - 41,487,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,476,314 - 41,487,032 (+)Ensemblmm10GRCm38
MGSCv371041,196,120 - 41,206,836 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361041,164,793 - 41,175,445 (+)NCBIMGSCv36mm8
Celera1042,362,567 - 42,373,283 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1022.41NCBI
Mical1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,484,653 - 34,493,877 (-)Ensembl
ChiLan1.0NW_00495541134,484,536 - 34,495,154 (-)NCBIChiLan1.0ChiLan1.0
MICAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,452,698 - 129,474,752 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16127,344,031 - 127,365,964 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06107,247,084 - 107,269,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16111,295,548 - 111,307,528 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,295,548 - 111,317,214 (-)EnsemblpanPan2panpan1.1
MICAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,350,459 - 66,358,391 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,350,427 - 66,360,615 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1266,170,362 - 66,179,716 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01267,233,628 - 67,242,331 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1267,233,594 - 67,242,261 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,583,586 - 66,592,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,432,435 - 66,441,766 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,704,165 - 66,713,547 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mical1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,293,750 - 101,304,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365645,568,767 - 5,577,915 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365645,568,613 - 5,579,402 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,511,693 - 75,522,765 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,511,692 - 75,522,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,789,661 - 84,800,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,400,908 - 64,424,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,400,152 - 64,427,366 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604036,703,949 - 36,715,881 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mical1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916701,249 - 710,148 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624916701,118 - 712,254 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mical1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11841,166,818 - 41,179,879 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mical1
79 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:101
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000000337
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH130593  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22044,986,322 - 44,986,507 (+)MAPPERmRatBN7.2
Rnor_6.02046,212,164 - 46,212,348NCBIRnor6.0
Rnor_5.02047,904,484 - 47,904,668UniSTSRnor5.0
RGSC_v3.42045,448,868 - 45,449,052UniSTSRGSC3.4
Celera2054,967,104 - 54,967,288UniSTS
RH 3.4 Map20484.92UniSTS
Cytogenetic Map20q12UniSTS
BE108385  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22044,972,487 - 44,972,638 (+)MAPPERmRatBN7.2
Rnor_6.02046,198,331 - 46,198,481NCBIRnor6.0
Rnor_5.02047,890,651 - 47,890,801UniSTSRnor5.0
RGSC_v3.42045,435,035 - 45,435,185UniSTSRGSC3.4
Celera2054,980,975 - 54,981,125UniSTS
RH 3.4 Map20486.21UniSTS
Cytogenetic Map20q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000337   ⟹   ENSRNOP00000000337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,556,536 - 46,568,484 (+)Ensembl
mRatBN7.2 Ensembl2044,974,138 - 44,986,089 (+)Ensembl
Rnor_6.0 Ensembl2046,199,981 - 46,211,930 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129191   ⟹   ENSRNOP00000110032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,558,254 - 46,568,487 (+)Ensembl
RefSeq Acc Id: NM_001106397   ⟹   NP_001099867
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,556,538 - 46,568,487 (+)NCBI
mRatBN7.22044,974,138 - 44,986,089 (+)NCBI
Rnor_6.02046,199,981 - 46,211,930 (+)NCBI
Rnor_5.02047,892,301 - 47,904,250 (+)NCBI
RGSC_v3.42045,436,685 - 45,448,634 (+)RGD
Celera2054,967,522 - 54,979,475 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098622   ⟹   XP_038954550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,547,983 - 46,568,486 (+)NCBI
mRatBN7.22044,974,138 - 44,986,088 (+)NCBI
RefSeq Acc Id: XM_063279079   ⟹   XP_063135149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,561,979 - 46,568,486 (+)NCBI
RefSeq Acc Id: NP_001099867   ⟸   NM_001106397
- UniProtKB: D3ZJD1 (UniProtKB/Swiss-Prot),   D3ZBP4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000337   ⟸   ENSRNOT00000000337
RefSeq Acc Id: XP_038954550   ⟸   XM_039098622
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135149   ⟸   XM_063279079
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000110032   ⟸   ENSRNOT00000129191
Protein Domains
bMERB   Calponin-homology (CH)   LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZBP4-F1-model_v2 AlphaFold D3ZBP4 1-1047 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701663
Promoter ID:EPDNEW_R12186
Type:initiation region
Name:Mical1_1
Description:microtubule associated monooxygenase, calponin and LIM domaincontaining 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02046,199,978 - 46,200,038EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309386 AgrOrtholog
BioCyc Gene G2FUF-3397 BioCyc
Ensembl Genes ENSRNOG00000000307 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000337 ENTREZGENE
  ENSRNOT00000000337.5 UniProtKB/Swiss-Prot
  ENSRNOT00000129191 ENTREZGENE
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  3.50.50.60 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
InterPro bMERB_dom UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  F-actin_Monoox_Mical UniProtKB/Swiss-Prot
  FAD-bd UniProtKB/Swiss-Prot
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report rno:294520 UniProtKB/Swiss-Prot
NCBI Gene 294520 ENTREZGENE
PANTHER [F-ACTIN]-MONOOXYGENASE MICAL1 UniProtKB/Swiss-Prot
  CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/Swiss-Prot
Pfam DUF3585 UniProtKB/Swiss-Prot
  FAD_binding_3 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
  Rossman_Mical UniProtKB/Swiss-Prot
PhenoGen Mical1 PhenoGen
PROSITE BMERB UniProtKB/Swiss-Prot
  LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000307 RatGTEx
SMART DUF3585 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
  SSF51905 UniProtKB/Swiss-Prot
UniProt A0ABK0LZN2_RAT UniProtKB/TrEMBL
  D3ZBP4 ENTREZGENE
  D3ZJD1 ENTREZGENE
  MICA1_RAT UniProtKB/Swiss-Prot
UniProt Secondary D3ZJD1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-04 Mical1  microtubule associated monooxygenase, calponin and LIM domain containing 1  Mical1  microtubule associated monoxygenase, calponin and LIM domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mical1  microtubule associated monoxygenase, calponin and LIM domain containing 1   Mical1_predicted  microtubule associated monoxygenase, calponin and LIM domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Mical1_predicted  microtubule associated monoxygenase, calponin and LIM domain containing 1 (predicted)  Nical_predicted  NEDD9 interacting protein with calponin homology and LIM domains (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Nical_predicted  NEDD9 interacting protein with calponin homology and LIM domains (predicted)      Symbol and Name status set to approved 70820 APPROVED