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Gene: Tnip1 (TNFAIP3 interacting protein 1) Rattus norvegicus

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Symbol:

Tnip1

Name:

TNFAIP3 interacting protein 1

RGD ID:

1309380

Description:

Predicted to enable identical protein binding activity; mitogen-activated protein kinase binding activity; and polyubiquitin modification-dependent protein binding activity. Predicted to be involved in several processes, including negative regulation of intracellular signal transduction; positive regulation of defense response; and positive regulation of macromolecule metabolic process. Predicted to be located in cytoplasm. Orthologous to human TNIP1 (TNFAIP3 interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC363599; TNFAIP3-interacting protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TNIP1 (TNFAIP3 interacting protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tnip1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tnip1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TNIP1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TNIP1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tnip1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TNIP1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TNIP1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tnip1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tnip1 (TNFAIP3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TNIP1 (TNFAIP3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tnip1 (TNFAIP3 interacting protein 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tnip1 (TNFAIP3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tnip1 (TNFAIP3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tnip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tnip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,537,759 - 39,585,038 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,537,437 - 39,585,158 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,037,048 - 39,084,328 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,037,058 - 39,077,625 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	43,725,512 - 43,772,420 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,215,588 - 43,262,498 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	38,719,300 - 38,766,195 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,255,776 - 40,303,092 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,255,776 - 40,296,470 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,028,044 - 40,075,239 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,319,735 - 40,366,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,375,087 - 38,422,139 (-)	NCBI		Celera
RGSC_v3.1	10	40,333,361 - 40,380,387 (-)	NCBI
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

asthma (ISO)

Breast Neoplasms (ISO)

psoriasis (ISO)

Sjogren's syndrome (ISO)

systemic lupus erythematosus (ISO)

systemic scleroderma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antimycin A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

caffeine (ISO)

captan (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

chrysene (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

corosolic acid (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

disodium selenite (ISO)

disulfiram (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

folpet (ISO)

hydrogen peroxide (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methoxychlor (EXP)

mithramycin (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to lipopolysaccharide (IBA)

glycoprotein biosynthetic process (ISO)

inflammatory response (IEA)

leukocyte cell-cell adhesion (ISO)

MyD88-dependent toll-like receptor signaling pathway (ISO)

negative regulation of canonical NF-kappaB signal transduction (IBA,ISO)

negative regulation of ERK1 and ERK2 cascade (IBA,ISO)

positive regulation of inflammatory response (ISO)

positive regulation of protein deubiquitination (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of canonical NF-kappaB signal transduction (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

identical protein binding (ISO)

mitogen-activated protein kinase binding (IBA,ISO)

polyubiquitin modification-dependent protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9923610	PMID:10385526	PMID:12220502	PMID:16684768	PMID:17632516	PMID:18212736	PMID:20010814	PMID:21988832	PMID:22011580	PMID:25416956	PMID:30561431

Genomics

Comparative Map Data

Tnip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,537,759 - 39,585,038 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,537,437 - 39,585,158 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,037,048 - 39,084,328 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,037,058 - 39,077,625 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	43,725,512 - 43,772,420 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,215,588 - 43,262,498 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	38,719,300 - 38,766,195 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,255,776 - 40,303,092 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,255,776 - 40,296,470 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,028,044 - 40,075,239 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,319,735 - 40,366,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,375,087 - 38,422,139 (-)	NCBI		Celera
RGSC_v3.1	10	40,333,361 - 40,380,387 (-)	NCBI
Cytogenetic Map	10	q22	NCBI

TNIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,029,943 - 151,087,685 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,029,939 - 151,093,577 (-)	Ensembl			hg38	GRCh38
GRCh37	5	150,409,504 - 150,467,246 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	150,389,699 - 150,441,190 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	150,389,709 - 150,440,842	NCBI
Celera	5	146,490,845 - 146,542,340 (-)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	145,555,312 - 145,613,010 (-)	NCBI		HuRef
CHM1_1	5	149,842,296 - 149,900,016 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	151,566,421 - 151,624,171 (-)	NCBI		T2T-CHM13v2.0

Tnip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	54,801,613 - 54,853,766 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	54,801,611 - 54,853,743 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	54,910,787 - 54,962,956 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	54,910,785 - 54,962,917 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	54,724,289 - 54,776,440 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	54,754,210 - 54,806,335 (-)	NCBI		MGSCv36	mm8
Celera	11	59,500,207 - 59,552,322 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.13	NCBI

Tnip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	2,594,756 - 2,621,304 (+)	Ensembl
ChiLan1.0	NW_004955408	2,575,324 - 2,621,845 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	146,261,722 - 146,316,360 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	144,400,502 - 144,455,917 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	146,457,347 - 146,514,515 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	152,459,868 - 152,510,540 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	152,459,868 - 152,510,540 (-)	Ensembl			panPan2	panpan1.1

TNIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	58,150,734 - 58,200,158 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	58,149,882 - 58,199,644 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,902,679 - 57,951,877 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	58,588,813 - 58,638,281 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	58,587,946 - 58,638,594 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	58,406,693 - 58,455,880 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	58,505,144 - 58,554,566 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	59,008,672 - 59,057,916 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tnip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	116,912,127 - 116,956,907 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936647	3,914,887 - 3,959,672 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936647	3,914,887 - 3,959,698 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,926,133 - 71,979,966 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	71,926,038 - 71,979,969 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	78,291,420 - 78,345,241 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	53,586,243 - 53,643,599 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	53,587,008 - 53,621,489 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	24,071,417 - 24,128,708 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	40,964,020 - 41,006,381 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tnip1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	37,348,670 - 37,389,165 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tnip1
348 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	98
Interacting mature miRNAs:	116
Transcripts:	ENSRNOT00000013864
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Rat167

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,085,864 - 39,086,127 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	39,085,731 - 39,086,272 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	39,085,731 - 39,086,127 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,304,554 - 40,305,353	NCBI	Rnor6.0
Rnor_6.0	10	40,304,554 - 40,304,949	NCBI	Rnor6.0
Rnor_5.0	10	40,076,721 - 40,077,520	UniSTS	Rnor5.0
Rnor_5.0	10	40,076,721 - 40,077,116	UniSTS	Rnor5.0
RGSC_v3.4	10	40,368,246 - 40,368,641	UniSTS	RGSC3.4
RGSC_v3.4	10	40,368,245 - 40,368,641	RGD	RGSC3.4
Celera	10	38,423,621 - 38,424,016	UniSTS
RGSC_v3.1	10	40,381,868 - 40,382,299	RGD
SHRSP x BN Map	10	36.2799	RGD
SHRSP x BN Map	10	36.2799	UniSTS
Cytogenetic Map	10	q22	UniSTS

AA997285

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,037,061 - 39,037,152 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,255,790 - 40,255,880	NCBI	Rnor6.0
Rnor_5.0	10	40,028,058 - 40,028,148	UniSTS	Rnor5.0
RGSC_v3.4	10	40,319,749 - 40,319,839	UniSTS	RGSC3.4
Celera	10	38,375,101 - 38,375,191	UniSTS
RH 3.4 Map	10	412.9	UniSTS
Cytogenetic Map	10	q22	UniSTS

AU049805

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,081,043 - 39,081,205 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,299,866 - 40,300,027	NCBI	Rnor6.0
Rnor_5.0	10	40,072,033 - 40,072,194	UniSTS	Rnor5.0
RGSC_v3.4	10	40,363,558 - 40,363,719	UniSTS	RGSC3.4
Celera	10	38,418,933 - 38,419,094	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013864 ⟹ ENSRNOP00000013864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,537,763 - 39,564,751 (-)	Ensembl
mRatBN7.2 Ensembl	10	39,037,058 - 39,077,625 (-)	Ensembl
Rnor_6.0 Ensembl	10	40,255,776 - 40,282,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086456 ⟹ ENSRNOP00000071437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	40,256,327 - 40,296,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121228 ⟹ ENSRNOP00000103756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,537,437 - 39,564,751 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151693 ⟹ ENSRNOP00000102950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,537,759 - 39,585,158 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162547 ⟹ ENSRNOP00000110289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,537,765 - 39,564,751 (-)	Ensembl

RefSeq Acc Id:

NM_001108826 ⟹ NP_001102296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,759 - 39,584,961 (-)	NCBI
mRatBN7.2	10	39,037,048 - 39,084,250 (-)	NCBI
Rnor_6.0	10	40,255,776 - 40,303,072 (-)	NCBI
Rnor_5.0	10	40,028,044 - 40,075,239 (-)	NCBI
RGSC_v3.4	10	40,319,735 - 40,366,764 (-)	RGD
Celera	10	38,375,087 - 38,422,139 (-)	RGD

Sequence:

show sequence

CACAGGGACGCATGGCCACACTCACTGGGCACATCTTCAGATCGCCTCGTGCTTCCTCCGGTGA
GTGACCTGGGCTGAAGGTGACAGAGAAAGGCAGATATCTCTGAGTTCAAGGCCAGCCTGATCTA
TTACTAGGTGGCCATCACGGCAGGGGTTGAGCCACCCTCATGGAAGGGAGAGGACCCTACCGGA
TCTACGACCCAGGGGGCAGCACGCCTCTGGGAGAGGAGGTGTCCGCAGCTTTTGACCGTCTAGT
GGAGGAGAATACTCGGCTGAAGGGAAAAATACAAGGGATAAAGATGTTAGGAGAGCTTCTGGAG
GAATCTCAAATGGAAGCGTCCAGACTCCGGCAGAAGGCGGAGGCGCTGGTCAGGGACAGCGAGC
TGCCTCCACCACCACCTGCTCCCTCCTTGGTCTCCTTTGATCCCCTGGCTGAGCTCACAGGACA
GGATACAAAGGTTCAGGCACATCCTACTACTACCACCACCACCACCACCACCACCACCACCACC
ACCATTGGAAACTCCATGGAGAAGTCAGTGTCAGCCTCCAAGCCTCCATCCAATGGCGCCTCCT
CTGACTTTGAAGTGGTCCCTCCTGAGGAGCAGAGTTCACCTGAAACTGGCCACCACTCTAGGAA
CGTGATGGAGCTGGGGTCCCCACCCCCAGAGGACGGCAATCTGATGCTCCACCTGCAGCGCCTG
GAGACCACCCTGAGTGTGTGTGCAGAGGAACCAGATCACAGCCAGCTCTTCACCCACCTGGGCC
GCATGGCCCTCGAGTTCAACAGGTTGGCCTCCAAAGTGCATAAAAATGAGCAACGTACCTCCAT
CCTGCAGACCTTATGTGAGCAGCTGCGCCAGGAGAATGAAGCCCTGAAGGCCAAGCTGGACAAG
AGCCTGGAACAGCGGGATCAGGCTGCTGAGAGGCTGCGGGAGGAAAACACGGAGCTCAAGAGAC
TGTTGATGAACAGCAACTGCAAAGAGGGACTCTGTGGGCAGCCCAGCTCCCCAAAGACAGAGGG
TGCTGGCAAGAAGGGCGTGGCTGGACAGCAGCAGGCCAGTATGACGGCAAGTAAGGTCCCTGAA
GCAGGGGCCTTCGGTACAGCTGAGAAGAAGGTGAAGTTGCTGGAACAGCAGCGCATGGAGCTGC
TGGAAGTGAACAAGCAGTGGGACCAGCATTTCCGGACCATGAAGCAACAGTATGAGCAGAAGAT
CACAGAGCTTCGCCAGAAGCTGGTGGACCTGCAGAAACAGGTGACTGAGCTGGAGGCTGAGCGC
GAGCAGAAGCAGCGTGACTTTGACCGGAAACTCCTCCTGGCTAAATCTAAGATTGAGATGGAAG
AGACTGACAAGGAACAGCTGACAACAGAGGCCAAGGAACTTCGCCAGAAGGTCAAGTACCTGCA
GGATCAGCTGAGCCCACTTATGAGGCAACGAGAATACCAGGAAAAGGAGATCCAGCGGCTCAAC
AAGGCCCTGGAGGAGGCCCTCAGCATCCAGGCCTCTCCCTCATCCCCACCTGCAGCTTTTGGGA
GCCCAGAAGGGGTCGGGGGCCATCTGAGGAAGCAGGAACTGGTGACGCAGAATGAGCTATTGAA
ACAGCAGGTAAAGATCTTTGAAGAGGACTTCCAGAGGGAACGGAGTGACCGTGAGCGCATGAAC
GAAGAGAAGGAGGAGCTGAAGAAGCAGGTGGAGAAGCTGCAGGCCCAGGTCACCCTGACCACTG
CCCAGCTCAGAACACTCAAAGAGGAGGAGAAGGCCAAGGAAGCCCTCAAACAACAGAAGAGGAA
GGCAAAGGCCTCAGGAGAGCGCTACCATGTGGAACCCCACCCTGAGCACCTTTGTGGCGCCTAT
CCCTATGCCTACCCACCCATGCCAGCCATGGTACCTCACCATGCATACAAGGACTGGTCCCAGA
TCCGATACCCTCCACCCCCTGTGCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGTCTCTT
CCATCTGCCAGAGTACACCTGGCGTCCACCCTGTGCAGGAATTCGGAATCAGAACTCTCAAGTG
ATGGACCCGCCCCCAGACAGGCCTGCAGAGCCAGAGTCTGCAGACAATGACTGTGACGGGCCCC
AGTGAGACTGCAGCGGGTCACTTGGTTCTGCCTTCATCTTTCAGAGCCAGCTGACCTCAGATTG
CCAAAAGTGTAAAGGCCATGTGCATGTTCAGTGTGACCCAAGCCTTGGCAGAACAGAGGCTGGG
AGGGGCAGATGGCCACATCCCCAGCCAAGCTCTAGCTGTTTACAAGACTAGGAAGAATCTACCC
GTGAGGCCTCCACCAGGTTCTTCTGGATGCAGCCAGGAGAAACTCAACACCCTGCCTCTTGCCA
AGACCAGGAGGCCTCACCTGGCTTTGACCTGCCATCTGTTGCCGAGGCCACTGGCTTCCATCCT
AAGAGTGGGGTGCAACAAGACCCCTTCCTCTCAGAACCTCAAAGACTTGGTTCCAGGCTCTCCA
GAGACCACACCCAGTTCGTGTGCATGTGCTGTTTTTGCTTCAAGCTCAGTAGCAGGACCTGCCC
TGCACCCCCTGCTCCTTACCCCTCTGTGAGGAGTTAGGGAAGAGGGCTTTGTCTCTAGAGCAGA
AGAGAACAACGGGATGGCCTGATGCTGTCATGCTCTCCACTGCACCTGTGTCGGCCTCCTGAGA
GCCACCATGATCTGGAATGAAGGCCACACCAGCCAGGTCTGCTAAAGGGCCCCAGACTGAAGAT
GACCTCAGCCCCCACAGTTATGTCTATGGTGCCAGAGGTCTGTATTAAGGTAGCTGCTGTTACT
AGGCAGCTGTTTGCACAAATCTTGGACATAAATCCAACTTGAGGATCTACA

hide sequence

RefSeq Acc Id:

XM_006246303 ⟹ XP_006246365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,578,442 (-)	NCBI
mRatBN7.2	10	39,037,050 - 39,077,677 (-)	NCBI
Rnor_6.0	10	40,255,776 - 40,296,478 (-)	NCBI
Rnor_5.0	10	40,028,044 - 40,075,239 (-)	NCBI

Sequence:

show sequence

CTCCGGGGACTTTCCCAGGGGCGTGGCGTGGCCCTGGCATTTCCTGGTACTGGCCGGAGCTTAG
GTTTGGCGAGTCTGGCGTCGGGCCCTGAAGCGCTCTCGTCCTAGGCTAGGTGGCCATCACGGCA
GGGGTTGAGCCACCCTCATGGAAGGGAGAGGACCCTACCGGATCTACGACCCAGGGGGCAGCAC
GCCTCTGGGAGAGGAGGTGTCCGCAGCTTTTGACCGTCTAGTGGAGGAGAATACTCGGCTGAAG
GGAAAAATACAAGGGATAAAGATGTTAGGAGAGCTTCTGGAGGAATCTCAAATGGAAGCGTCCA
GACTCCGGCAGAAGGCGGAGGCGCTGGTCAGGGACAGCGAGCTGCCTCCACCACCACCTGCTCC
CTCCTTGGTCTCCTTTGATCCCCTGGCTGAGCTCACAGGACAGGATACAAAGGTTCAGGCACAT
CCTACTACTACCACCACCACCACCACCACCACCACCACCACCACCATTGGAAACTCCATGGAGA
AGTCAGTGTCAGCCTCCAAGCCTCCATCCAATGGCGCCTCCTCTGACTTTGAAGTGGTCCCTCC
TGAGGAGCAGAGTTCACCTGAAACTGGCCACCACTCTAGGAACGTGATGGAGCTGGGGTCCCCA
CCCCCAGAGGACGGCAATCTGATGCTCCACCTGCAGCGCCTGGAGACCACCCTGAGTGTGTGTG
CAGAGGAACCAGATCACAGCCAGCTCTTCACCCACCTGGGCCGCATGGCCCTCGAGTTCAACAG
GTTGGCCTCCAAAGTGCATAAAAATGAGCAACGTACCTCCATCCTGCAGACCTTATGTGAGCAG
CTGCGCCAGGAGAATGAAGCCCTGAAGGCCAAGCTGGACAAGAGCCTGGAACAGCGGGATCAGG
CTGCTGAGAGGCTGCGGGAGGAAAACACGGAGCTCAAGAGACTGTTGATGAACAGCAACTGCAA
AGAGGGACTCTGTGGGCAGCCCAGCTCCCCAAAGACAGAGGGTGCTGGCAAGAAGGGCGTGGCT
GGACAGCAGCAGGCCAGTATGACGGCAAGTAAGGTCCCTGAAGCAGGGGCCTTCGGTACAGCTG
AGAAGAAGGTGAAGTTGCTGGAACAGCAGCGCATGGAGCTGCTGGAAGTGAACAAGCAGTGGGA
CCAGCATTTCCGGACCATGAAGCAACAGTATGAGCAGAAGATCACAGAGCTTCGCCAGAAGCTG
GTGGACCTGCAGAAACAGGTGACTGAGCTGGAGGCTGAGCGCGAGCAGAAGCAGCGTGACTTTG
ACCGGAAACTCCTCCTGGCTAAATCTAAGATTGAGATGGAAGAGACTGACAAGGAACAGCTGAC
AACAGAGGCCAAGGAACTTCGCCAGAAGGTCAAGTACCTGCAGGATCAGCTGAGCCCACTTATG
AGGCAACGAGAATACCAGGAAAAGGAGATCCAGCGGCTCAACAAGGCCCTGGAGGAGGCCCTCA
GCATCCAGGCCTCTCCCTCATCCCCACCTGCAGCTTTTGGGAGCCCAGAAGGGGTCGGGGGCCA
TCTGAGGAAGCAGGAACTGGTGACGCAGAATGAGCTATTGAAACAGCAGGTAAAGATCTTTGAA
GAGGACTTCCAGAGGGAACGGAGTGACCGTGAGCGCATGAACGAAGAGAAGGAGGAGCTGAAGA
AGCAGGTGGAGAAGCTGCAGGCCCAGGTCACCCTGACCACTGCCCAGCTCAGAACACTCAAAGA
GGAGGAGAAGGCCAAGGAAGCCCTCAAACAACAGAAGAGGAAGGCAAAGGCCTCAGGAGAGCGC
TACCATGTGGAACCCCACCCTGAGCACCTTTGTGGCGCCTATCCCTATGCCTACCCACCCATGC
CAGCCATGGTACCTCACCATGCATACAAGGACTGGTCCCAGATCCGATACCCTCCACCCCCTGT
GCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGTCTCTTCCATCTGCCAGAGTACACCTGG
CGTCCACCCTGTGCAGGAATTCGGAATCAGAACTCTCAAGTGATGGACCCGCCCCCAGACAGGC
CTGCAGAGCCAGAGTCTGCAGACAATGACTGTGACGGGCCCCAGTGAGACTGCAGCGGGTCACT
TGGTTCTGCCTTCATCTTTCAGAGCCAGCTGACCTCAGATTGCCAAAAGTGTAAAGGCCATGTG
CATGTTCAGTGTGACCCAAGCCTTGGCAGAACAGAGGCTGGGAGGGGCAGATGGCCACATCCCC
AGCCAAGCTCTAGCTGTTTACAAGACTAGGAAGAATCTACCCGTGAGGCCTCCACCAGGTTCTT
CTGGATGCAGCCAGGAGAAACTCAACACCCTGCCTCTTGCCAAGACCAGGAGGCCTCACCTGGC
TTTGACCTGCCATCTGTTGCCGAGGCCACTGGCTTCCATCCTAAGAGTGGGGTGCAACAAGACC
CCTTCCTCTCAGAACCTCAAAGACTTGGTTCCAGGCTCTCCAGAGACCACACCCAGTTCGTGTG
CATGTGCTGTTTTTGCTTCAAGCTCAGTAGCAGGACCTGCCCTGCACCCCCTGCTCCTTACCCC
TCTGTGAGGAGTTAGGGAAGAGGGCTTTGTCTCTAGAGCAGAAGAGAACAACGGGATGGCCTGA
TGCTGTCATGCTCTCCACTGCACCTGTGTCGGCCTCCTGAGAGCCACCATGATCTGGAATGAAG
GCCACACCAGCCAGGTCTGCTAAAGGGCCCCAGACTGAAGATGACCTCAGCCCCCACAGTTATG
TCTATGGTGCCAGAGGTCTGTATTAAGGTAGCTGCTGTTACTAGGCAGCTGTTTGCACAAATCT
TGGACATAAATCCAACTTGAGGATCTACA

hide sequence

RefSeq Acc Id:

XM_006246306 ⟹ XP_006246368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,578,418 (-)	NCBI
mRatBN7.2	10	39,037,050 - 39,077,677 (-)	NCBI
Rnor_6.0	10	40,255,776 - 40,296,478 (-)	NCBI
Rnor_5.0	10	40,028,044 - 40,075,239 (-)	NCBI

Sequence:

show sequence

CTCCGGGGACTTTCCCAGGGGCGTGGCGTGGCCCTGGCATTTCCTGGTACTGGCCGGAGCTTAG
GTTTGGCGAGTCTGGCGTCGGGCCCTGAAGCGCTCTCGTCCTAGGCTAGGTGGCCATCACGGCA
GGGGTTGAGCCACCCTCATGGAAGGGAGAGGACCCTACCGGATCTACGACCCAGGGGGCAGCAC
GCCTCTGGGAGAGGAGGTGTCCGCAGCTTTTGACCGTCTAGTGGAGGAGAATACTCGGCTGAAG
GGAAAAATACAAGGGATAAAGATGTTAGGAGAGCTTCTGGAGGAATCTCAAATGGAAGCGTCCA
GACTCCGGCAGAAGGCGGAGGCGCTGGTCAGGGACAGCGAGCTGCCTCCACCACCACCTGCTCC
CTCCTTGGTCTCCTTTGATCCCCTGGCTGAGCTCACAGGACAGGATACAAAGGTTCAGGCACAT
CCTACTACTACCACCACCACCACCACCACCACCACCACCACCACCATTGGAAACTCCATGGAGA
AGTCAGTGTCAGCCTCCAAGCCTCCATCCAATGGCGCCTCCTCTGACTTTGAAGTGGTCCCTCC
TGAGGAGCAGAGTTCACCTGAAACTGGCCACCACTCTAGGAACGTGATGGAGCTGGGGTCCCCA
CCCCCAGAGGACGGCAATCTGATGCTCCACCTGCAGCGCCTGGAGACCACCCTGAGTGTGTGTG
CAGAGGAACCAGATCACAGCCAGCTCTTCACCCACCTGGGCCGCATGGCCCTCGAGTTCAACAG
GTTGGCCTCCAAAGTGCATAAAAATGAGCAACGTACCTCCATCCTGCAGACCTTATGTGAGCAG
CTGCGCCAGGAGAATGAAGCCCTGAAGGCCAAGCTGGACAAGAGCCTGGAACAGCGGGATCAGG
CTGCTGAGAGGCTGCGGGAGGAAAACACGGAGCTCAAGAGACTGTTGATGAACAGCAACTGCAA
AGAGGGACTCTGTGGGCAGCCCAGCTCCCCAAAGACAGAGGGTGCTGGCAAGAAGGGCGTGGCT
GGACAGCAGCAGGCCAGTATGACGGCAAGTAAGGTCCCTGAAGCAGGGGCCTTCGGTACAGCTG
AGAAGAAGGTGAAGTTGCTGGAACAGCAGCGCATGGAGCTGCTGGAAGTGAACAAGCAGTGGGA
CCAGCATTTCCGGACCATGAAGCAACAGTATGAGCAGAAGATCACAGAGCTTCGCCAGAAGCTG
GTGGACCTGCAGAAACAGGTGACTGAGCTGGAGGCTGAGCGCGAGCAGAAGCAGCGTGACTTTG
ACCGGAAACTCCTCCTGGCTAAATCTAAGATTGAGATGGAAGAGACTGACAAGGAACAGCTGAC
AACAGAGGCCAAGGAACTTCGCCAGAAGGTCAAGTACCTGCAGGATCAGCTGAGCCCACTTATG
AGGCAACGAGAATACCAGGAAAAGGAGATCCAGCGGCTCAACAAGGCCCTGGAGGAGGCCCTCA
GCATCCAGGCCTCTCCCTCATCCCCACCTGCAGCTTTTGGGAGCCCAGAAGGGGTCGGGGGCCA
TCTGAGGAAGCAGGAACTGGTGACGCAGAATGAGCTATTGAAACAGCAGGTAAAGATCTTTGAA
GAGGACTTCCAGAGGGAACGGAGTGACCGTGAGCGCATGAACGAAGAGAAGGAGGAGCTGAAGA
AGCAGGTGGAGAAGCTGCAGGCCCAGGTCACCCTGACCACTGCCCAGCTCAGAACACTCAAAGA
GGAGGAGAAGGCCAAGGAAGCCCTCAAACAACAGAAGAGGAAGGCAAAGGCCTCAGGAGAGCGC
TACCATGTGGAACCCCACCCTGAGCACCTTTGTGGCGCCTATCCCTATGCCTACCCACCCATGC
CAGCCATGGTACCTCACCATGCATACAAGGACTGGTCCCAGATCCGATACCCTCCACCCCCTGT
GCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGTCTCTTCCATCTGCCAGAGTACACCTGG
CGTCCACCCTGTGCAGGAATTCGGAATCAGAACTCTCAAGTGATGGACCCGCCCCCAGACAGGC
CTGCAGAGCCAGAGCCAGCTGACCTCAGATTGCCAAAAGTGTAAAGGCCATGTGCATGTTCAGT
GTGACCCAAGCCTTGGCAGAACAGAGGCTGGGAGGGGCAGATGGCCACATCCCCAGCCAAGCTC
TAGCTGTTTACAAGACTAGGAAGAATCTACCCGTGAGGCCTCCACCAGGTTCTTCTGGATGCAG
CCAGGAGAAACTCAACACCCTGCCTCTTGCCAAGACCAGGAGGCCTCACCTGGCTTTGACCTGC
CATCTGTTGCCGAGGCCACTGGCTTCCATCCTAAGAGTGGGGTGCAACAAGACCCCTTCCTCTC
AGAACCTCAAAGACTTGGTTCCAGGCTCTCCAGAGACCACACCCAGTTCGTGTGCATGTGCTGT
TTTTGCTTCAAGCTCAGTAGCAGGACCTGCCCTGCACCCCCTGCTCCTTACCCCTCTGTGAGGA
GTTAGGGAAGAGGGCTTTGTCTCTAGAGCAGAAGAGAACAACGGGATGGCCTGATGCTGTCATG
CTCTCCACTGCACCTGTGTCGGCCTCCTGAGAGCCACCATGATCTGGAATGAAGGCCACACCAG
CCAGGTCTGCTAAAGGGCCCCAGACTGAAGATGACCTCAGCCCCCACAGTTATGTCTATGGTGC
CAGAGGTCTGTATTAAGGTAGCTGCTGTTACTAGGCAGCTGTTTGCACAAATCTTGGACATAAA
TCCAACTTGAGGATCTACA

hide sequence

RefSeq Acc Id:

XM_063269496 ⟹ XP_063125566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,579,855 (-)	NCBI

RefSeq Acc Id:

XM_063269497 ⟹ XP_063125567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,585,038 (-)	NCBI

RefSeq Acc Id:

XM_063269498 ⟹ XP_063125568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,584,976 (-)	NCBI

RefSeq Acc Id:

XM_063269499 ⟹ XP_063125569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,579,855 (-)	NCBI

RefSeq Acc Id:

XM_063269500 ⟹ XP_063125570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,578,418 (-)	NCBI

RefSeq Acc Id:

XM_063269501 ⟹ XP_063125571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,579,855 (-)	NCBI

RefSeq Acc Id:

XM_063269502 ⟹ XP_063125572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,578,418 (-)	NCBI

RefSeq Acc Id:

XM_063269503 ⟹ XP_063125573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,579,855 (-)	NCBI

RefSeq Acc Id:

XM_063269504 ⟹ XP_063125574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,584,996 (-)	NCBI

RefSeq Acc Id:

XM_063269505 ⟹ XP_063125575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,584,997 (-)	NCBI

RefSeq Acc Id:

XM_063269506 ⟹ XP_063125576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,537,763 - 39,578,376 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102296	(Get FASTA)	NCBI Sequence Viewer
	NP_001430619	(Get FASTA)	NCBI Sequence Viewer
	NP_001430620	(Get FASTA)	NCBI Sequence Viewer
	NP_001430621	(Get FASTA)	NCBI Sequence Viewer
	NP_001430622	(Get FASTA)	NCBI Sequence Viewer
	NP_001430623	(Get FASTA)	NCBI Sequence Viewer
	NP_001430624	(Get FASTA)	NCBI Sequence Viewer
	NP_001430625	(Get FASTA)	NCBI Sequence Viewer
	NP_001430626	(Get FASTA)	NCBI Sequence Viewer
	NP_001430627	(Get FASTA)	NCBI Sequence Viewer
	NP_001430628	(Get FASTA)	NCBI Sequence Viewer
	NP_001430629	(Get FASTA)	NCBI Sequence Viewer
	NP_001430630	(Get FASTA)	NCBI Sequence Viewer
	NP_001430631	(Get FASTA)	NCBI Sequence Viewer
	NP_001430632	(Get FASTA)	NCBI Sequence Viewer
	NP_001430633	(Get FASTA)	NCBI Sequence Viewer
	NP_001430634	(Get FASTA)	NCBI Sequence Viewer
	XP_006246365	(Get FASTA)	NCBI Sequence Viewer
	XP_006246368	(Get FASTA)	NCBI Sequence Viewer
	XP_063125566	(Get FASTA)	NCBI Sequence Viewer
	XP_063125567	(Get FASTA)	NCBI Sequence Viewer
	XP_063125568	(Get FASTA)	NCBI Sequence Viewer
	XP_063125569	(Get FASTA)	NCBI Sequence Viewer
	XP_063125570	(Get FASTA)	NCBI Sequence Viewer
	XP_063125571	(Get FASTA)	NCBI Sequence Viewer
	XP_063125572	(Get FASTA)	NCBI Sequence Viewer
	XP_063125573	(Get FASTA)	NCBI Sequence Viewer
	XP_063125574	(Get FASTA)	NCBI Sequence Viewer
	XP_063125575	(Get FASTA)	NCBI Sequence Viewer
	XP_063125576	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04452	(Get FASTA)	NCBI Sequence Viewer
	EDM04453	(Get FASTA)	NCBI Sequence Viewer
	EDM04454	(Get FASTA)	NCBI Sequence Viewer
	EDM04455	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013864
	ENSRNOP00000013864.5
	ENSRNOP00000102950
	ENSRNOP00000102950.1
	ENSRNOP00000103756
	ENSRNOP00000103756.1
	ENSRNOP00000110289
	ENSRNOP00000110289.1

RefSeq Acc Id:

NP_001102296 ⟸ NM_001108826

- Sequence:

show sequence

MEGRGPYRIYDPGGSTPLGEEVSAAFDRLVEENTRLKGKIQGIKMLGELLEESQMEASRLRQKA
EALVRDSELPPPPPAPSLVSFDPLAELTGQDTKVQAHPTTTTTTTTTTTTTTIGNSMEKSVSAS
KPPSNGASSDFEVVPPEEQSSPETGHHSRNVMELGSPPPEDGNLMLHLQRLETTLSVCAEEPDH
SQLFTHLGRMALEFNRLASKVHKNEQRTSILQTLCEQLRQENEALKAKLDKSLEQRDQAAERLR
EENTELKRLLMNSNCKEGLCGQPSSPKTEGAGKKGVAGQQQASMTASKVPEAGAFGTAEKKVKL
LEQQRMELLEVNKQWDQHFRTMKQQYEQKITELRQKLVDLQKQVTELEAEREQKQRDFDRKLLL
AKSKIEMEETDKEQLTTEAKELRQKVKYLQDQLSPLMRQREYQEKEIQRLNKALEEALSIQASP
SSPPAAFGSPEGVGGHLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKL
QAQVTLTTAQLRTLKEEEKAKEALKQQKRKAKASGERYHVEPHPEHLCGAYPYAYPPMPAMVPH
HAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRPPCAGIRNQNSQVMDPPPDRPAEPES
ADNDCDGPQ

hide sequence

RefSeq Acc Id:	XP_006246368 ⟸ XM_006246306
- Peptide Label:	isoform X2
- UniProtKB:	A6HEJ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGRGPYRIYDPGGSTPLGEEVSAAFDRLVEENTRLKGKIQGIKMLGELLEESQMEASRLRQKA EALVRDSELPPPPPAPSLVSFDPLAELTGQDTKVQAHPTTTTTTTTTTTTTTIGNSMEKSVSAS KPPSNGASSDFEVVPPEEQSSPETGHHSRNVMELGSPPPEDGNLMLHLQRLETTLSVCAEEPDH SQLFTHLGRMALEFNRLASKVHKNEQRTSILQTLCEQLRQENEALKAKLDKSLEQRDQAAERLR EENTELKRLLMNSNCKEGLCGQPSSPKTEGAGKKGVAGQQQASMTASKVPEAGAFGTAEKKVKL LEQQRMELLEVNKQWDQHFRTMKQQYEQKITELRQKLVDLQKQVTELEAEREQKQRDFDRKLLL AKSKIEMEETDKEQLTTEAKELRQKVKYLQDQLSPLMRQREYQEKEIQRLNKALEEALSIQASP SSPPAAFGSPEGVGGHLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKL QAQVTLTTAQLRTLKEEEKAKEALKQQKRKAKASGERYHVEPHPEHLCGAYPYAYPPMPAMVPH HAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRPPCAGIRNQNSQVMDPPPDRPAEPEP ADLRLPKV hide sequence

RefSeq Acc Id:	XP_006246365 ⟸ XM_006246303
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHV1 (UniProtKB/TrEMBL), A6HEJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGRGPYRIYDPGGSTPLGEEVSAAFDRLVEENTRLKGKIQGIKMLGELLEESQMEASRLRQKA EALVRDSELPPPPPAPSLVSFDPLAELTGQDTKVQAHPTTTTTTTTTTTTTTIGNSMEKSVSAS KPPSNGASSDFEVVPPEEQSSPETGHHSRNVMELGSPPPEDGNLMLHLQRLETTLSVCAEEPDH SQLFTHLGRMALEFNRLASKVHKNEQRTSILQTLCEQLRQENEALKAKLDKSLEQRDQAAERLR EENTELKRLLMNSNCKEGLCGQPSSPKTEGAGKKGVAGQQQASMTASKVPEAGAFGTAEKKVKL LEQQRMELLEVNKQWDQHFRTMKQQYEQKITELRQKLVDLQKQVTELEAEREQKQRDFDRKLLL AKSKIEMEETDKEQLTTEAKELRQKVKYLQDQLSPLMRQREYQEKEIQRLNKALEEALSIQASP SSPPAAFGSPEGVGGHLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKL QAQVTLTTAQLRTLKEEEKAKEALKQQKRKAKASGERYHVEPHPEHLCGAYPYAYPPMPAMVPH HAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRPPCAGIRNQNSQVMDPPPDRPAEPES ADNDCDGPQ hide sequence

Ensembl Acc Id:

ENSRNOP00000071437 ⟸ ENSRNOT00000086456

Ensembl Acc Id:

ENSRNOP00000013864 ⟸ ENSRNOT00000013864

RefSeq Acc Id:	XP_063125567 ⟸ XM_063269497
- Peptide Label:	isoform X1
- UniProtKB:	A6HEJ9 (UniProtKB/TrEMBL), D3ZHV1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125575 ⟸ XM_063269505
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063125574 ⟸ XM_063269504
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063125568 ⟸ XM_063269498
- Peptide Label:	isoform X1
- UniProtKB:	A6HEJ9 (UniProtKB/TrEMBL), D3ZHV1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125573 ⟸ XM_063269503
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063125571 ⟸ XM_063269501
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063125569 ⟸ XM_063269499
- Peptide Label:	isoform X2
- UniProtKB:	A6HEJ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125566 ⟸ XM_063269496
- Peptide Label:	isoform X1
- UniProtKB:	A6HEJ9 (UniProtKB/TrEMBL), D3ZHV1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125572 ⟸ XM_063269502
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063125570 ⟸ XM_063269500
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063125576 ⟸ XM_063269506
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000103756 ⟸ ENSRNOT00000121228

Ensembl Acc Id:

ENSRNOP00000102950 ⟸ ENSRNOT00000151693

Ensembl Acc Id:

ENSRNOP00000110289 ⟸ ENSRNOT00000162547

Protein Domains

NF-kappa-B essential modulator NEMO CC2-LZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHV1-F1-model_v2	AlphaFold	D3ZHV1	1-649	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697197

Promoter ID:

EPDNEW_R7718

Type:

initiation region

Name:

Tnip1_1

Description:

TNFAIP3 interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	40,296,435 - 40,296,495	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309380	AgrOrtholog
BioCyc Gene	G2FUF-25096	BioCyc
Ensembl Genes	ENSRNOG00000010370	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013864	ENTREZGENE
	ENSRNOT00000013864.8	UniProtKB/TrEMBL
	ENSRNOT00000121228	ENTREZGENE
	ENSRNOT00000121228.1	UniProtKB/TrEMBL
	ENSRNOT00000151693	ENTREZGENE
	ENSRNOT00000151693.1	UniProtKB/TrEMBL
	ENSRNOT00000162547	ENTREZGENE
	ENSRNOT00000162547.1	UniProtKB/TrEMBL
Gene3D-CATH	Nemo cc2-lz domain - 1d5 darpin complex	UniProtKB/TrEMBL
InterPro	CC2-LZ_dom	UniProtKB/TrEMBL
KEGG Report	rno:363599	UniProtKB/TrEMBL
NCBI Gene	363599	ENTREZGENE
PANTHER	PTHR31882:SF3	UniProtKB/TrEMBL
	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	CC2-LZ	UniProtKB/TrEMBL
PhenoGen	Tnip1	PhenoGen
RatGTEx	ENSRNOG00000010370	RatGTEx
UniProt	A0ABK0LDY6_RAT	UniProtKB/TrEMBL
	A0ABK0LHJ8_RAT	UniProtKB/TrEMBL
	A0ABK0LVA9_RAT	UniProtKB/TrEMBL
	A6HEJ8	ENTREZGENE, UniProtKB/TrEMBL
	A6HEJ9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHV1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tnip1	TNFAIP3 interacting protein 1	Tnip1_predicted	TNFAIP3 interacting protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tnip1_predicted	TNFAIP3 interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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