Ermard (ER membrane-associated RNA degradation) - Rat Genome Database

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Gene: Ermard (ER membrane-associated RNA degradation) Rattus norvegicus
Analyze
Symbol: Ermard
Name: ER membrane-associated RNA degradation
RGD ID: 1309374
Description: Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ERMARD (ER membrane associated RNA degradation); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: endoplasmic reticulum membrane-associated RNA degradation protein; ER membrane-associated RNA degradation protein; hypothetical protein LOC361485; LOC361485; MGC125089; RGD1309374; RGD1562376; uncharacterized protein LOC361485
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,656,414 - 64,675,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl164,656,529 - 64,675,806 (+)EnsemblGRCr8
mRatBN7.2155,983,312 - 56,004,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)EnsemblmRatBN7.2
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)Ensemblrn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,195,633 - 52,219,900 (+)NCBICelera
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ermard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,656,414 - 64,675,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl164,656,529 - 64,675,806 (+)EnsemblGRCr8
mRatBN7.2155,983,312 - 56,004,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)EnsemblmRatBN7.2
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)Ensemblrn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,195,633 - 52,219,900 (+)NCBICelera
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Cytogenetic Map1q12NCBI
ERMARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,751,306 - 169,781,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,751,567 - 169,781,600 (+)Ensemblhg38GRCh38
GRCh376170,151,718 - 170,181,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,893,646 - 169,923,542 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346169,969,352 - 169,999,240NCBI
Celera6170,861,896 - 170,891,792 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,571,485 - 167,601,446 (+)NCBIHuRef
CHM1_16170,413,940 - 170,443,916 (+)NCBICHM1_1
T2T-CHM13v2.06171,105,236 - 171,135,403 (+)NCBIT2T-CHM13v2.0
Ermard
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,261,825 - 15,310,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,261,470 - 15,310,306 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381715,041,551 - 15,090,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,041,208 - 15,090,044 (+)Ensemblmm10GRCm38
MGSCv371715,178,576 - 15,201,196 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361714,715,200 - 14,769,186 (+)NCBIMGSCv36mm8
Celera1715,839,838 - 15,854,990 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Ermard
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,835,751 - 3,865,321 (-)Ensembl
ChiLan1.0NW_0049554113,838,125 - 3,866,282 (-)NCBIChiLan1.0ChiLan1.0
ERMARD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,002,047 - 190,032,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,885,402 - 187,916,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,863,406 - 172,891,822 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)EnsemblpanPan2panpan1.1
ERMARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,998,431 - 72,024,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,998,437 - 72,023,512 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1271,758,577 - 71,783,581 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01272,880,117 - 72,905,280 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,880,086 - 72,909,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,232,744 - 72,257,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,073,611 - 72,098,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,463,145 - 72,489,411 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ermard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,949,595 - 150,989,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648918,203,204 - 18,236,552 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,201,790 - 18,244,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERMARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,678 - 540,896 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERMARD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,558,822 - 97,592,030 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604069,555,223 - 69,586,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ermard
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,684,312 - 5,709,584 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ermard
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114939,899 - 959,665 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ermard
234 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000059845
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH140578  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,994,533 - 55,994,741 (+)MAPPERmRatBN7.2
Rnor_6.0156,993,926 - 56,994,133NCBIRnor6.0
Rnor_5.0158,177,003 - 58,177,210UniSTSRnor5.0
RGSC_v3.4153,917,050 - 53,917,257UniSTSRGSC3.4
RH 3.4 Map1658.6UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005498072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005498073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000059845   ⟹   ENSRNOP00000056590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl164,656,529 - 64,675,805 (+)Ensembl
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)Ensembl
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119249   ⟹   ENSRNOP00000085620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl164,657,095 - 64,675,806 (+)Ensembl
mRatBN7.2 Ensembl155,983,424 - 56,002,687 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136027   ⟹   ENSRNOP00000102269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl164,657,095 - 64,675,806 (+)Ensembl
RefSeq Acc Id: NM_001419620   ⟹   NP_001406549
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,529 - 64,675,803 (+)NCBI
mRatBN7.2155,983,410 - 56,002,684 (+)NCBI
RefSeq Acc Id: XM_006227972   ⟹   XP_006228034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0156,982,742 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227974   ⟹   XP_006228036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,596 - 64,675,803 (+)NCBI
mRatBN7.2155,983,430 - 56,004,569 (+)NCBI
Rnor_6.0156,982,820 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227975   ⟹   XP_006228037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,520 - 64,675,803 (+)NCBI
mRatBN7.2155,983,390 - 56,004,569 (+)NCBI
Rnor_6.0156,982,816 - 57,008,076 (+)NCBI
Rnor_5.0158,165,821 - 58,185,153 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008758816   ⟹   XP_008757038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0156,982,742 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008758817   ⟹   XP_008757039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,659,941 - 64,675,803 (+)NCBI
mRatBN7.2155,986,770 - 56,004,569 (+)NCBI
Rnor_6.0156,986,162 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589901   ⟹   XP_017445390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,662,442 - 64,675,803 (+)NCBI
mRatBN7.2155,989,181 - 56,004,569 (+)NCBI
Rnor_6.0156,988,835 - 57,008,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100085   ⟹   XP_038956013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
RefSeq Acc Id: XM_039100111   ⟹   XP_038956039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,669,306 (+)NCBI
mRatBN7.2155,983,312 - 55,996,205 (+)NCBI
RefSeq Acc Id: XM_063266197   ⟹   XP_063122267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
RefSeq Acc Id: XM_063266202   ⟹   XP_063122272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,415 - 64,675,803 (+)NCBI
RefSeq Acc Id: XM_063266215   ⟹   XP_063122285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,659,209 - 64,675,803 (+)NCBI
RefSeq Acc Id: XR_005498072
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,673,269 (+)NCBI
mRatBN7.2155,983,312 - 56,000,147 (+)NCBI
RefSeq Acc Id: XR_005498073
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,671,047 (+)NCBI
mRatBN7.2155,983,312 - 55,997,928 (+)NCBI
RefSeq Acc Id: XR_010054030
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,656,414 - 64,673,292 (+)NCBI
RefSeq Acc Id: XP_006228034   ⟸   XM_006227972
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228036   ⟸   XM_006227974
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228037   ⟸   XM_006227975
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757038   ⟸   XM_008758816
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008757039   ⟸   XM_008758817
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017445390   ⟸   XM_017589901
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000056590   ⟸   ENSRNOT00000059845
RefSeq Acc Id: XP_038956013   ⟸   XM_039100085
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956039   ⟸   XM_039100111
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000085620   ⟸   ENSRNOT00000119249
RefSeq Acc Id: NP_001406549   ⟸   NM_001419620
- UniProtKB: Q3B8R1 (UniProtKB/Swiss-Prot),   D3ZU62 (UniProtKB/Swiss-Prot),   A0A8I6A0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122267   ⟸   XM_063266197
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122272   ⟸   XM_063266202
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063122285   ⟸   XM_063266215
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000102269   ⟸   ENSRNOT00000136027
Protein Domains
DUF4209

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3B8R1-F1-model_v2 AlphaFold Q3B8R1 1-678 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689644
Promoter ID:EPDNEW_R166
Type:multiple initiation site
Name:Ermard_1
Description:ER membrane-associated RNA degradation
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0156,982,800 - 56,982,860EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309374 AgrOrtholog
BioCyc Gene G2FUF-61324 BioCyc
Ensembl Genes ENSRNOG00000015230 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000059845 ENTREZGENE
  ENSRNOT00000059845.5 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7096546 IMAGE-MGC_LOAD
InterPro DUF4209 UniProtKB/Swiss-Prot
  ERMARD UniProtKB/Swiss-Prot
MGC_CLONE MGC:94758 IMAGE-MGC_LOAD
NCBI Gene 361485 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN UniProtKB/Swiss-Prot
  PTHR31701 UniProtKB/Swiss-Prot
Pfam DUF4209 UniProtKB/Swiss-Prot
PhenoGen Ermard PhenoGen
RatGTEx ENSRNOG00000015230 RatGTEx
UniProt A0A8I6A0K4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LBY0_RAT UniProtKB/TrEMBL
  D3ZU62 ENTREZGENE
  EMARD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D3ZU62 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Ermard  ER membrane-associated RNA degradation  RGD1309374  LOC361485  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309374  LOC361485  RGD1309374_predicted  LOC361485 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309374_predicted  LOC361485 (predicted)  LOC361485_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361485_predicted  LOC361485 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL