Kgd4 (alpha-ketoglutarate dehydrogenase subunit 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kgd4 (alpha-ketoglutarate dehydrogenase subunit 4) Rattus norvegicus
Analyze
Symbol: Kgd4 (Ensembl: Mrps36)
Name: alpha-ketoglutarate dehydrogenase subunit 4 (Ensembl:mitochondrial ribosomal protein S36)
RGD ID: 1309315
Description: Predicted to be involved in 2-oxoglutarate metabolic process and tricarboxylic acid cycle. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial oxoglutarate dehydrogenase complex. Orthologous to human KGD4 (alpha-ketoglutarate dehydrogenase subunit 4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S36, mitochondrial; alpha-ketoglutarate dehydrogenase component 4; LOC294696; mitochondrial ribosomal protein S36; Mrps36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,604,611 - 33,614,988 (-)NCBIGRCr8
mRatBN7.2231,870,549 - 31,878,335 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,870,551 - 31,880,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx239,004,585 - 39,012,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0237,045,627 - 37,053,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,903,759 - 31,911,592 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,740,620 - 30,750,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,739,855 - 30,748,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,899,207 - 49,909,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,530,724 - 31,538,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,451,100 - 31,490,839 (-)NCBI
Celera227,884,219 - 27,892,495 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:11279123   PMID:14651853   PMID:18614015  


Genomics

Comparative Map Data
Kgd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,604,611 - 33,614,988 (-)NCBIGRCr8
mRatBN7.2231,870,549 - 31,878,335 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,870,551 - 31,880,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx239,004,585 - 39,012,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0237,045,627 - 37,053,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,903,759 - 31,911,592 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,740,620 - 30,750,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,739,855 - 30,748,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,899,207 - 49,909,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,530,724 - 31,538,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,451,100 - 31,490,839 (-)NCBI
Celera227,884,219 - 27,892,495 (-)NCBICelera
Cytogenetic Map2q12NCBI
KGD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,217,760 - 69,230,158 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,217,760 - 69,230,158 (+)EnsemblGRCh38hg38GRCh38
GRCh37568,513,587 - 68,525,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36568,549,329 - 68,561,741 (+)NCBINCBI36Build 36hg18NCBI36
Build 34568,549,342 - 68,561,739NCBI
Celera565,512,825 - 65,528,390 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef565,469,537 - 65,482,195 (+)NCBIHuRef
CHM1_1568,513,313 - 68,525,725 (+)NCBICHM1_1
T2T-CHM13v2.0570,040,372 - 70,055,914 (+)NCBIT2T-CHM13v2.0
Mrps36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,872,448 - 100,881,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,872,463 - 100,881,167 (-)EnsemblGRCm39 Ensembl
GRCm3813100,735,940 - 100,744,659 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,735,955 - 100,744,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713101,505,895 - 101,514,614 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613101,836,218 - 101,844,892 (-)NCBIMGSCv36mm8
Celera13104,345,739 - 104,353,541 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.23NCBI
Kgd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544638,161 - 50,167 (+)NCBIChiLan1.0ChiLan1.0
KGD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2444,689,561 - 44,705,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1542,843,883 - 42,858,731 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0544,770,401 - 44,785,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1546,339,397 - 46,345,053 (-)NCBIpanpan1.1PanPan1.1panPan2
KGD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,302,992 - 54,311,943 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl525,834,145 - 25,834,559 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha251,269,353 - 51,278,289 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0254,813,730 - 54,822,456 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl254,813,822 - 54,822,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1251,872,745 - 51,880,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0252,648,030 - 52,656,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,535,638 - 53,544,376 (+)NCBIUU_Cfam_GSD_1.0
Kgd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213191,408,431 - 191,417,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936480344,670 - 353,871 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936480345,332 - 353,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KGD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1647,386,323 - 47,405,904 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11647,386,412 - 47,405,342 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,279,820 - 51,298,746 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KGD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1465,311,461 - 65,324,129 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604914,042,577 - 14,055,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kgd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624905105,155 - 118,607 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kgd4
59 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:41
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000073433
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat

Markers in Region
RH127812  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2231,872,074 - 31,872,260 (+)MAPPERmRatBN7.2
Rnor_6.0230,742,146 - 30,742,331NCBIRnor6.0
Rnor_5.0249,900,737 - 49,900,922UniSTSRnor5.0
RGSC_v3.4231,532,254 - 31,532,439UniSTSRGSC3.4
Celera227,885,745 - 27,885,930UniSTS
RH 3.4 Map279.7UniSTS
Cytogenetic Map2q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 36 20 13 20 8 11 74 35 38 9 8
Low 21 21 6 21 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000083089   ⟹   ENSRNOP00000070993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl230,739,855 - 30,748,428 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084294   ⟹   ENSRNOP00000074617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,871,862 - 31,874,694 (-)Ensembl
Rnor_6.0 Ensembl230,741,151 - 30,748,325 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095661   ⟹   ENSRNOP00000090399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,870,551 - 31,874,893 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095820   ⟹   ENSRNOP00000082398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,870,551 - 31,878,361 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108857   ⟹   ENSRNOP00000076635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,870,551 - 31,878,375 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109912   ⟹   ENSRNOP00000093261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl231,870,551 - 31,880,730 (-)Ensembl
RefSeq Acc Id: NM_001191605   ⟹   NP_001178534
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,604,611 - 33,612,397 (-)NCBI
mRatBN7.2231,870,549 - 31,878,335 (-)NCBI
Rnor_6.0230,740,620 - 30,748,402 (-)NCBI
Rnor_5.0249,899,207 - 49,909,508 (-)NCBI
Celera227,884,219 - 27,892,495 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063281501   ⟹   XP_063137571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,604,839 - 33,614,988 (-)NCBI
RefSeq Acc Id: XM_063281502   ⟹   XP_063137572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8233,604,839 - 33,612,424 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178534   ⟸   NM_001191605
- UniProtKB: M0R776 (UniProtKB/TrEMBL),   A6I5A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070993   ⟸   ENSRNOT00000083089
RefSeq Acc Id: ENSRNOP00000074617   ⟸   ENSRNOT00000084294
RefSeq Acc Id: ENSRNOP00000076635   ⟸   ENSRNOT00000108857
RefSeq Acc Id: ENSRNOP00000090399   ⟸   ENSRNOT00000095661
RefSeq Acc Id: ENSRNOP00000082398   ⟸   ENSRNOT00000095820
RefSeq Acc Id: ENSRNOP00000093261   ⟸   ENSRNOT00000109912
RefSeq Acc Id: XP_063137571   ⟸   XM_063281501
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137572   ⟸   XM_063281502
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZC3-F1-model_v2 AlphaFold A0A0G2JZC3 1-112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691110
Promoter ID:EPDNEW_R1635
Type:initiation region
Name:Mrps36_1
Description:mitochondrial ribosomal protein S36
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0230,748,373 - 30,748,433EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309315 AgrOrtholog
BioCyc Gene G2FUF-54651 BioCyc
Ensembl Genes ENSRNOG00000061213 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084294.2 UniProtKB/TrEMBL
  ENSRNOT00000095661.1 UniProtKB/TrEMBL
  ENSRNOT00000095820.1 UniProtKB/TrEMBL
  ENSRNOT00000108857.1 UniProtKB/TrEMBL
  ENSRNOT00000109912.1 UniProtKB/TrEMBL
InterPro Ribosomal_S36_mt UniProtKB/TrEMBL
KEGG Report rno:294696 UniProtKB/TrEMBL
NCBI Gene 294696 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S36, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR31601 UniProtKB/TrEMBL
Pfam DUF2638 UniProtKB/TrEMBL
PhenoGen Kgd4 PhenoGen
RatGTEx ENSRNOG00000061213 RatGTEx
UniProt A0A8I5Y6W4_RAT UniProtKB/TrEMBL
  A0A8I5ZV77_RAT UniProtKB/TrEMBL
  A0A8I6AK02_RAT UniProtKB/TrEMBL
  A0A8I6GIV1_RAT UniProtKB/TrEMBL
  A6I5A6 ENTREZGENE, UniProtKB/TrEMBL
  M0R776 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-12 Kgd4  alpha-ketoglutarate dehydrogenase subunit 4  Mrps36  mitochondrial ribosomal protein S36  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mrps36  mitochondrial ribosomal protein S36   Mrps36_predicted  mitochondrial ribosomal protein S36 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrps36_predicted  mitochondrial ribosomal protein S36 (predicted)      Symbol and Name status set to approved 70820 APPROVED