Atcay (ATCAY kinesin light chain interacting caytaxin) - Rat Genome Database

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Gene: Atcay (ATCAY kinesin light chain interacting caytaxin) Rattus norvegicus
Analyze
Symbol: Atcay
Name: ATCAY kinesin light chain interacting caytaxin
RGD ID: 1309312
Description: Predicted to enable kinesin binding activity. Involved in mitochondrion distribution and neuron projection development. Located in several cellular components, including dendrite; neuron projection terminus; and perinuclear region of cytoplasm. Used to study dystonia. Human ortholog(s) of this gene implicated in Cayman type cerebellar ataxia and cerebellar ataxia. Orthologous to human ATCAY (ATCAY kinesin light chain interacting caytaxin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ataxia, cerebellar, Cayman type; ataxia, cerebellar, Cayman type (caytaxin); ATCAY, caytaxin; caytaxin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,138,485 - 9,162,249 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl79,138,587 - 9,163,370 (+)EnsemblGRCr8
mRatBN7.278,487,763 - 8,511,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,487,763 - 8,512,663 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx711,371,965 - 11,396,564 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,247,448 - 13,272,043 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,114,964 - 11,138,493 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,356,017 - 11,379,782 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,356,118 - 11,380,913 (+)Ensemblrn6Rnor6.0
Rnor_5.0711,523,425 - 11,547,188 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.479,971,563 - 9,995,528 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera76,676,006 - 6,699,559 (+)NCBICelera
RGSC_v3.179,971,756 - 10,001,916 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cayman ataxia protein caytaxin is transported by kinesin along neurites through binding to kinesin light chains. Aoyama T, etal., J Cell Sci. 2009 Nov 15;122(Pt 22):4177-85. Epub 2009 Oct 27.
2. Mutations in a novel gene encoding a CRAL-TRIO domain cause human Cayman ataxia and ataxia/dystonia in the jittery mouse. Bomar JM, etal., Nat Genet. 2003 Nov;35(3):264-9. Epub 2003 Oct 12.
3. Nerve growth factor stimulates interaction of Cayman ataxia protein BNIP-H/Caytaxin with peptidyl-prolyl isomerase Pin1 in differentiating neurons. Buschdorf JP, etal., PLoS One. 2008 Jul 16;3(7):e2686. doi: 10.1371/journal.pone.0002686.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Caytaxin deficiency causes generalized dystonia in rats. Xiao J and Ledoux MS, Brain Res Mol Brain Res. 2005 Nov 30;141(2):181-92. Epub 2005 Oct 24.
10. Caytaxin deficiency disrupts signaling pathways in cerebellar cortex. Xiao J, etal., Neuroscience. 2007 Jan 19;144(2):439-61. Epub 2006 Nov 7.
Additional References at PubMed
PMID:12477932   PMID:16899818   PMID:17157273   PMID:26343454  


Genomics

Comparative Map Data
Atcay
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,138,485 - 9,162,249 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl79,138,587 - 9,163,370 (+)EnsemblGRCr8
mRatBN7.278,487,763 - 8,511,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,487,763 - 8,512,663 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx711,371,965 - 11,396,564 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,247,448 - 13,272,043 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,114,964 - 11,138,493 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,356,017 - 11,379,782 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,356,118 - 11,380,913 (+)Ensemblrn6Rnor6.0
Rnor_5.0711,523,425 - 11,547,188 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.479,971,563 - 9,995,528 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera76,676,006 - 6,699,559 (+)NCBICelera
RGSC_v3.179,971,756 - 10,001,916 (+)NCBI
Cytogenetic Map7q11NCBI
ATCAY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,880,685 - 3,928,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,879,864 - 3,928,082 (+)Ensemblhg38GRCh38
GRCh37193,880,683 - 3,928,080 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,831,639 - 3,879,080 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34193,831,675 - 3,877,004NCBI
Celera193,818,196 - 3,865,544 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,644,535 - 3,691,726 (+)NCBIHuRef
CHM1_1193,880,227 - 3,927,684 (+)NCBICHM1_1
T2T-CHM13v2.0193,859,875 - 3,907,372 (+)NCBIT2T-CHM13v2.0
Atcay
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,040,338 - 81,067,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,040,342 - 81,066,667 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381081,204,504 - 81,230,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,204,508 - 81,230,833 (-)Ensemblmm10GRCm38
MGSCv371080,667,258 - 80,693,524 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361080,607,642 - 80,633,908 (-)NCBIMGSCv36mm8
Celera1082,224,870 - 82,251,132 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Atcay
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,715,850 - 5,741,202 (+)Ensembl
ChiLan1.0NW_0049554955,715,943 - 5,741,202 (+)NCBIChiLan1.0ChiLan1.0
ATCAY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,277,727 - 8,325,463 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,509,355 - 7,557,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,905,615 - 2,953,079 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,854,423 - 3,900,175 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,854,423 - 3,900,175 (+)EnsemblpanPan2panpan1.1
ATCAY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,610,124 - 55,641,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,612,260 - 55,641,832 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2055,335,634 - 55,367,384 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02056,270,246 - 56,302,013 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,270,249 - 56,302,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,326,177 - 55,357,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,807,965 - 55,839,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,006,705 - 56,038,464 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atcay
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,608,298 - 215,638,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,196,580 - 2,229,202 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,196,556 - 2,226,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATCAY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,800,048 - 74,838,671 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1274,800,048 - 74,838,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,343,893 - 75,381,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATCAY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,643,754 - 3,678,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,643,793 - 3,675,263 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660814,568,362 - 4,610,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atcay
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,471,460 - 6,495,142 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248286,471,452 - 6,495,142 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Atcay
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11153,660,161 - 153,684,617 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atcay
107 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:529
Count of miRNA genes:243
Interacting mature miRNAs:300
Transcripts:ENSRNOT00000041325
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH138150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.278,510,725 - 8,510,957 (+)MAPPERmRatBN7.2
Rnor_6.0711,378,981 - 11,379,212NCBIRnor6.0
Rnor_5.0711,546,387 - 11,546,618UniSTSRnor5.0
RGSC_v3.479,994,727 - 9,994,958UniSTSRGSC3.4
Celera76,698,758 - 6,698,989UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 12 62 152 65 64 33 89 33 6 295 182 8 125 61 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041325   ⟹   ENSRNOP00000045560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl79,138,587 - 9,163,370 (+)Ensembl
mRatBN7.2 Ensembl78,487,763 - 8,512,663 (+)Ensembl
Rnor_6.0 Ensembl711,356,118 - 11,380,913 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113838   ⟹   ENSRNOP00000095791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl79,138,811 - 9,163,370 (+)Ensembl
mRatBN7.2 Ensembl78,487,843 - 8,511,527 (+)Ensembl
RefSeq Acc Id: NM_001040190   ⟹   NP_001035280
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr879,138,485 - 9,162,249 (+)NCBI
mRatBN7.278,487,763 - 8,511,527 (+)NCBI
Rnor_6.0711,356,017 - 11,379,782 (+)NCBI
Rnor_5.0711,523,425 - 11,547,188 (+)NCBI
RGSC_v3.479,971,563 - 9,995,528 (+)RGD
Celera76,676,006 - 6,699,559 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001035280 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI28696 (Get FASTA)   NCBI Sequence Viewer  
  AAT11790 (Get FASTA)   NCBI Sequence Viewer  
  EDL89182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045560
GenBank Protein Q1M168 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001035280   ⟸   NM_001040190
- UniProtKB: Q1M168 (UniProtKB/Swiss-Prot),   A0A8I6APV9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045560   ⟸   ENSRNOT00000041325
Ensembl Acc Id: ENSRNOP00000095791   ⟸   ENSRNOT00000113838
Protein Domains
CRAL-TRIO

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q1M168-F1-model_v2 AlphaFold Q1M168 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694982
Promoter ID:EPDNEW_R5507
Type:multiple initiation site
Name:Atcay_1
Description:ATCAY, caytaxin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0711,356,152 - 11,356,212EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309312 AgrOrtholog
BioCyc Gene G2FUF-35007 BioCyc
Ensembl Genes ENSRNOG00000020407 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000041325 ENTREZGENE
Gene3D-CATH 3.40.525.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8366437 IMAGE-MGC_LOAD
InterPro Bcl2-/adenovirus-E1B UniProtKB/Swiss-Prot
  CRAL-TRIO_dom UniProtKB/Swiss-Prot
  CRAL-TRIO_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:362826 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156459 IMAGE-MGC_LOAD
NCBI Gene 362826 ENTREZGENE
PANTHER BNIP - RELATED UniProtKB/Swiss-Prot
  CAYTAXIN UniProtKB/Swiss-Prot
Pfam BNIP2 UniProtKB/Swiss-Prot
  CRAL_TRIO_2 UniProtKB/Swiss-Prot
PhenoGen Atcay PhenoGen
PROSITE CRAL_TRIO UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020407 RatGTEx
SMART SEC14 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52087 UniProtKB/Swiss-Prot
UniProt A0A8I6APV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QNE4_RAT UniProtKB/TrEMBL
  ATCAY_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Atcay  ATCAY kinesin light chain interacting caytaxin  Atcay  ATCAY, caytaxin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-29 Atcay  ATCAY, caytaxin  Atcay  ataxia, cerebellar, Cayman type  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Atcay  ataxia, cerebellar, Cayman type  Atcay_predicted  ataxia, cerebellar, Cayman type (caytaxin) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Atcay_predicted  ataxia, cerebellar, Cayman type (caytaxin) (predicted)      Symbol and Name status set to approved 70820 APPROVED