Mmel1 (membrane metallo-endopeptidase-like 1) - Rat Genome Database

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Pathways
Gene: Mmel1 (membrane metallo-endopeptidase-like 1) Rattus norvegicus
Analyze
Symbol: Mmel1
Name: membrane metallo-endopeptidase-like 1
RGD ID: 1309299
Description: Enables metalloendopeptidase activity and zinc ion binding activity. Predicted to be involved in protein processing. Located in extracellular space. Orthologous to human MMEL1 (membrane metalloendopeptidase like 1); INTERACTS WITH 6-propyl-2-thiouracil; allethrin; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313755; mel transforming oncogene-like 1; Mell1; NEP2; NEP2(m); NEPII; neprilysin 2; neprilysin II; neprilysin-2; NL2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Mmel1Tn(sb-T2/Bart3)2.255Mcwi
Genetic Models: F344-Mmel1Tn(sb-T2/Bart3)2.255Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,713,602 - 170,744,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5170,713,627 - 170,744,058 (+)EnsemblGRCr8
mRatBN7.25165,431,278 - 165,461,716 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,431,343 - 165,461,716 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5168,136,416 - 168,166,854 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,957,822 - 169,988,264 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,920,362 - 169,950,802 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,273,450 - 172,303,905 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,273,459 - 172,304,225 (+)Ensemblrn6Rnor6.0
Rnor_5.05175,729,143 - 175,759,868 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45171,675,007 - 171,703,353 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5163,639,889 - 163,668,234 (+)NCBICelera
RGSC_v3.15171,683,479 - 171,713,539 (+)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Cell-specific activity of neprilysin 2 isoforms and enzymic specificity compared with neprilysin. Rose C, etal., Biochem J. 2002 May 1;363(Pt 3):697-705.
7. A three-dimensional model of the neprilysin 2 active site based on the X-ray structure of neprilysin. Identification of residues involved in substrate hydrolysis and inhibitor binding of neprilysin 2. Voisin S, etal., J Biol Chem. 2004 Oct 29;279(44):46172-81. Epub 2004 Aug 4.
Additional References at PubMed
PMID:10542292   PMID:10814502   PMID:12477932   PMID:12710972   PMID:15057822   PMID:16081046   PMID:18539150  


Genomics

Comparative Map Data
Mmel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,713,602 - 170,744,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5170,713,627 - 170,744,058 (+)EnsemblGRCr8
mRatBN7.25165,431,278 - 165,461,716 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,431,343 - 165,461,716 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5168,136,416 - 168,166,854 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,957,822 - 169,988,264 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,920,362 - 169,950,802 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,273,450 - 172,303,905 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,273,459 - 172,304,225 (+)Ensemblrn6Rnor6.0
Rnor_5.05175,729,143 - 175,759,868 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45171,675,007 - 171,703,353 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5163,639,889 - 163,668,234 (+)NCBICelera
RGSC_v3.15171,683,479 - 171,713,539 (+)NCBI
Cytogenetic Map5q36NCBI
MMEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,590,639 - 2,633,016 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12,590,639 - 2,633,016 (-)Ensemblhg38GRCh38
GRCh3712,522,078 - 2,564,455 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612,511,941 - 2,554,289 (-)NCBIBuild 36Build 36hg18NCBI36
Celera121,530 - 63,919 (+)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef11,801,317 - 1,843,691 (-)NCBIHuRef
CHM1_112,509,160 - 2,551,374 (-)NCBICHM1_1
T2T-CHM13v2.012,032,284 - 2,074,662 (-)NCBIT2T-CHM13v2.0
Mmel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,954,042 - 154,979,987 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,954,042 - 154,979,985 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384154,869,585 - 154,895,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,869,585 - 154,895,528 (+)Ensemblmm10GRCm38
MGSCv374154,243,694 - 154,269,639 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364153,713,436 - 153,739,330 (+)NCBIMGSCv36mm8
Celera4157,143,798 - 157,167,036 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map485.54NCBI
Mmel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,638,233 - 8,663,053 (+)Ensembl
ChiLan1.0NW_0049554868,635,727 - 8,662,793 (+)NCBIChiLan1.0ChiLan1.0
MMEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,614,185 - 225,656,859 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,274,769 - 224,317,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011,323,914 - 1,362,178 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112,462,621 - 2,504,213 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12,462,621 - 2,504,213 (-)EnsemblpanPan2panpan1.1
MMEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1557,434,880 - 57,467,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl557,434,886 - 57,465,911 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha557,448,632 - 57,481,167 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0557,638,951 - 57,671,485 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,638,957 - 57,669,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,630,277 - 57,662,801 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0557,522,566 - 57,555,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,912,337 - 57,944,882 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mmel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,468,571 - 28,499,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936737970,504 - 997,067 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936737970,504 - 997,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl664,436,642 - 64,472,759 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1664,436,778 - 64,470,888 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,819,225 - 58,855,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MMEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,916,051 - 128,963,545 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20128,921,369 - 128,963,188 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605433,291,779 - 33,306,944 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,453,177 - 7,485,439 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248187,451,213 - 7,481,988 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mmel1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v115,819,744 - 5,847,326 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:672
Count of miRNA genes:152
Interacting mature miRNAs:172
Transcripts:ENSRNOT00000017957, ENSRNOT00000064266, ENSRNOT00000064738
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat

Markers in Region
D5Got120  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85170,738,117 - 170,738,248 (+)Marker Load Pipeline
mRatBN7.25165,455,774 - 165,455,905 (+)MAPPERmRatBN7.2
Rnor_6.05172,297,964 - 172,298,094NCBIRnor6.0
Rnor_5.05175,753,927 - 175,754,057UniSTSRnor5.0
RGSC_v3.45171,697,411 - 171,697,542RGDRGSC3.4
RGSC_v3.45171,697,412 - 171,697,542UniSTSRGSC3.4
Celera5163,662,293 - 163,662,423UniSTS
RGSC_v3.15171,707,907 - 171,708,037RGD
RH 3.4 Map51153.6RGD
RH 3.4 Map51153.6UniSTS
RH 2.0 Map51144.4RGD
Cytogenetic Map5q36UniSTS
AU047969  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,431,956 - 165,432,116 (+)MAPPERmRatBN7.2
Rnor_6.05172,274,149 - 172,274,308NCBIRnor6.0
Rnor_5.05175,729,802 - 175,729,961UniSTSRnor5.0
RGSC_v3.45171,673,597 - 171,673,756UniSTSRGSC3.4
Celera5163,638,479 - 163,638,638UniSTS
Cytogenetic Map5q36UniSTS
RH138040  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25165,461,470 - 165,461,682 (+)MAPPERmRatBN7.2
Rnor_6.05172,303,660 - 172,303,871NCBIRnor6.0
Rnor_5.05175,759,623 - 175,759,834UniSTSRnor5.0
RGSC_v3.45171,703,108 - 171,703,319UniSTSRGSC3.4
Celera5163,667,989 - 163,668,200UniSTS
RH 3.4 Map51153.9UniSTS
Cytogenetic Map5q36UniSTS


Genetic Models
This gene Mmel1 is modified in the following models/strains:


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 10 27 129 67 64 36 51 36 5 180 104 6 105 23 63 28 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017957   ⟹   ENSRNOP00000017957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5170,713,629 - 170,744,058 (+)Ensembl
mRatBN7.2 Ensembl5165,431,343 - 165,461,715 (+)Ensembl
Rnor_6.0 Ensembl5172,273,459 - 172,304,225 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000064266   ⟹   ENSRNOP00000062904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5170,715,689 - 170,744,050 (+)Ensembl
mRatBN7.2 Ensembl5165,433,367 - 165,461,716 (+)Ensembl
Rnor_6.0 Ensembl5172,275,734 - 172,303,596 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151829   ⟹   ENSRNOP00000100706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5170,713,627 - 170,744,050 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163920   ⟹   ENSRNOP00000101044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5170,713,627 - 170,744,050 (+)Ensembl
RefSeq Acc Id: NM_001107997   ⟹   NP_001101467
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,629 - 170,744,058 (+)NCBI
mRatBN7.25165,431,283 - 165,461,715 (+)NCBI
Rnor_6.05172,275,559 - 172,303,905 (+)NCBI
Rnor_5.05175,729,143 - 175,759,868 (+)NCBI
RGSC_v3.45171,675,007 - 171,703,353 (+)RGD
Celera5163,639,889 - 163,668,234 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239569   ⟹   XP_006239631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,605 - 170,744,058 (+)NCBI
mRatBN7.25165,431,278 - 165,461,716 (+)NCBI
Rnor_6.05172,273,450 - 172,303,902 (+)NCBI
Rnor_5.05175,729,143 - 175,759,868 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239570   ⟹   XP_006239632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,605 - 170,744,058 (+)NCBI
mRatBN7.25165,431,278 - 165,461,710 (+)NCBI
Rnor_6.05172,273,450 - 172,303,904 (+)NCBI
Rnor_5.05175,729,143 - 175,759,868 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764360   ⟹   XP_008762582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,605 - 170,744,058 (+)NCBI
mRatBN7.25165,431,278 - 165,461,710 (+)NCBI
Rnor_6.05172,290,395 - 172,303,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110112   ⟹   XP_038966040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,605 - 170,744,058 (+)NCBI
mRatBN7.25165,431,278 - 165,461,710 (+)NCBI
RefSeq Acc Id: XM_039110114   ⟹   XP_038966042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,604 - 170,741,027 (+)NCBI
mRatBN7.25165,431,278 - 165,458,684 (+)NCBI
RefSeq Acc Id: XM_039110115   ⟹   XP_038966043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,604 - 170,741,030 (+)NCBI
mRatBN7.25165,431,278 - 165,458,672 (+)NCBI
RefSeq Acc Id: XM_039110116   ⟹   XP_038966044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,602 - 170,739,393 (+)NCBI
mRatBN7.25165,431,278 - 165,457,041 (+)NCBI
RefSeq Acc Id: XM_039110117   ⟹   XP_038966045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,713,603 - 170,739,392 (+)NCBI
mRatBN7.25165,431,278 - 165,457,041 (+)NCBI
RefSeq Acc Id: XM_063287836   ⟹   XP_063143906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85170,734,162 - 170,744,058 (+)NCBI
RefSeq Acc Id: NP_001101467   ⟸   NM_001107997
- UniProtKB: A0A0H2UHK7 (UniProtKB/TrEMBL),   A0A8L2QVP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239631   ⟸   XM_006239569
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QVP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239632   ⟸   XM_006239570
- Peptide Label: isoform X2
- UniProtKB: A6IUM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762582   ⟸   XM_008764360
- Peptide Label: isoform X3
- UniProtKB: A6IUM6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062904   ⟸   ENSRNOT00000064266
Ensembl Acc Id: ENSRNOP00000017957   ⟸   ENSRNOT00000017957
RefSeq Acc Id: XP_038966040   ⟸   XM_039110112
- Peptide Label: isoform X3
- UniProtKB: A6IUM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966042   ⟸   XM_039110114
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038966043   ⟸   XM_039110115
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038966044   ⟸   XM_039110116
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038966045   ⟸   XM_039110117
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063143906   ⟸   XM_063287836
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000100706   ⟸   ENSRNOT00000151829
Ensembl Acc Id: ENSRNOP00000101044   ⟸   ENSRNOT00000163920
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0C1T0-F1-model_v2 AlphaFold P0C1T0 1-774 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694312
Promoter ID:EPDNEW_R4837
Type:initiation region
Name:Mmel1_1
Description:membrane metallo-endopeptidase-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05172,273,514 - 172,273,574EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309299 AgrOrtholog
BioCyc Gene G2FUF-38946 BioCyc
Ensembl Genes ENSRNOG00000012593 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000017957 ENTREZGENE
  ENSRNOT00000064266 ENTREZGENE
  ENSRNOT00000163920 ENTREZGENE
Gene3D-CATH 1.10.1380.10 UniProtKB/Swiss-Prot
  3.40.390.10 UniProtKB/Swiss-Prot
InterPro MetalloPept_cat_dom_sf UniProtKB/Swiss-Prot
  Peptidase_M13 UniProtKB/Swiss-Prot
  Peptidase_M13_C UniProtKB/Swiss-Prot
  Peptidase_M13_dom_2 UniProtKB/Swiss-Prot
  Peptidase_M13_N UniProtKB/Swiss-Prot
NCBI Gene 313755 ENTREZGENE
PANTHER PTHR11733 UniProtKB/Swiss-Prot
  PTHR11733:SF141 UniProtKB/Swiss-Prot
Pfam Peptidase_M13 UniProtKB/Swiss-Prot
  Peptidase_M13_N UniProtKB/Swiss-Prot
PhenoGen Mmel1 PhenoGen
PRINTS NEPRILYSIN UniProtKB/Swiss-Prot
PROSITE NEPRILYSIN UniProtKB/Swiss-Prot
  ZINC_PROTEASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012593 RatGTEx
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/Swiss-Prot
UniProt A0A0H2UHK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QVP5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZM8_RAT UniProtKB/TrEMBL
  A0ABK0KZT9_RAT UniProtKB/TrEMBL
  A6IUM5_RAT UniProtKB/TrEMBL
  A6IUM6 ENTREZGENE, UniProtKB/TrEMBL
  MMEL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Mmel1  membrane metallo-endopeptidase-like 1  Mell1_predicted  mel transforming oncogene-like 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Mell1_predicted  mel transforming oncogene-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED