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Gene: Cstf1 (cleavage stimulation factor subunit 1) Rattus norvegicus

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Symbol:

Cstf1

Name:

cleavage stimulation factor subunit 1

RGD ID:

1309267

Description:

Predicted to be involved in mRNA 3'-end processing. Predicted to be located in nucleoplasm. Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CF-1 50 kDa subunit; cleavage stimulation factor 50 kDa subunit; cleavage stimulation factor, 3' pre-RNA, subunit 1; cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa; CSTF 50 kDa subunit; cstF-50; LOC311670; MGC109461

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSTF1 (cleavage stimulation factor subunit 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cstf1 (cleavage stimulation factor, 3' pre-RNA, subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cstf1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSTF1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSTF1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cstf1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSTF1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSTF1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cstf1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cstf1 (cleavage stimulation factor subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CSTF1 (cleavage stimulation factor subunit 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cstf1 (cleavage stimulation factor, 3' pre-RNA, subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cstf1 (cleavage stimulation factor, 3' pre-RNA, subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CstF50	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cpf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cstf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	181,562,953 - 181,574,727 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	181,562,955 - 181,574,727 (+)	Ensembl				GRCr8
mRatBN7.2	3	161,144,522 - 161,156,294 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	161,144,548 - 161,156,300 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	164,954,448 - 164,966,023 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	173,453,467 - 173,465,042 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	171,195,283 - 171,206,858 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	170,380,413 - 170,392,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	170,380,719 - 170,392,160 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	163,287,021 - 163,298,464 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	160,345,104 - 160,356,547 (+)	NCBI		Celera
RGSC_v3.1	3	163,193,056 - 163,204,498 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

caffeine (ISO)

cannabidiol (ISO)

CGP 52608 (ISO)

clozapine (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

indometacin (ISO)

ivermectin (ISO)

ozone (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quartz (ISO)

resveratrol (ISO)

Salinomycin (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA 3'-end processing (IEA)

mRNA processing (IEA)

regulation of mRNA 3'-end processing (IEA,ISO)

Cellular Component

mRNA cleavage stimulating factor complex (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

3'-end pre-mRNA processing pathway (ISO)

mRNA decay pathway (IEA)

RNA polymerase II transcription termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Pre-mRNA 3'-end processing complex assembly and function.	Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.	Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11459828	PMID:15489334	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Cstf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	181,562,953 - 181,574,727 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	181,562,955 - 181,574,727 (+)	Ensembl				GRCr8
mRatBN7.2	3	161,144,522 - 161,156,294 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	161,144,548 - 161,156,300 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	164,954,448 - 164,966,023 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	173,453,467 - 173,465,042 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	171,195,283 - 171,206,858 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	170,380,413 - 170,392,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	170,380,719 - 170,392,160 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	163,287,021 - 163,298,464 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	160,345,104 - 160,356,547 (+)	NCBI		Celera
RGSC_v3.1	3	163,193,056 - 163,204,498 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

CSTF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	56,392,379 - 56,406,362 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	56,392,371 - 56,406,362 (+)	Ensembl			hg38	GRCh38
GRCh37	20	54,967,435 - 54,981,418 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	54,400,834 - 54,412,989 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	54,401,025 - 54,412,514	NCBI
Celera	20	51,707,860 - 51,720,014 (+)	NCBI		Celera
Cytogenetic Map	20	q13.2-q13.31	NCBI
HuRef	20	51,752,305 - 51,764,459 (+)	NCBI		HuRef
CHM1_1	20	54,868,520 - 54,880,675 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	58,169,873 - 58,183,854 (+)	NCBI		T2T-CHM13v2.0

Cstf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	172,212,591 - 172,224,369 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	172,212,601 - 172,224,368 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	172,370,645 - 172,382,449 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	172,370,681 - 172,382,448 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	172,196,503 - 172,206,586 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	172,062,208 - 172,072,291 (+)	NCBI		MGSCv36	mm8
Celera	2	178,330,185 - 178,340,378 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	94.84	NCBI

Cstf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	2,816,732 - 2,830,306 (-)	Ensembl
ChiLan1.0	NW_004955445	2,816,986 - 2,830,971 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSTF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	62,139,439 - 62,151,380 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	62,132,557 - 62,144,490 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	52,730,646 - 52,744,635 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	54,017,362 - 54,029,296 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	54,017,435 - 54,033,230 (+)	Ensembl			panPan2	panpan1.1

CSTF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	41,604,988 - 41,615,988 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	41,605,447 - 41,615,671 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	40,852,695 - 40,863,729 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	42,315,943 - 42,326,976 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	42,315,969 - 42,328,350 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	41,555,718 - 41,566,747 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	41,694,756 - 41,705,804 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	42,352,711 - 42,363,782 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cstf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	183,767,547 - 183,775,478 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936875	310,442 - 320,085 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936875	310,491 - 319,027 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSTF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	56,972,248 - 56,985,813 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	56,972,202 - 56,984,065 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	64,083,832 - 64,095,600 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSTF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	7,717,974 - 7,729,974 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	7,715,595 - 7,726,770 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	55,792,354 - 55,804,748 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cstf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	132,023 - 144,363 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	133,872 - 143,762 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cstf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	145,615,208 - 145,626,808 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	929
Count of miRNA genes:	306
Interacting mature miRNAs:	390
Transcripts:	ENSRNOT00000055101
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH137028

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	161,154,780 - 161,154,984 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	170,390,649 - 170,390,852	NCBI	Rnor6.0
Rnor_5.0	3	176,466,431 - 176,466,634	UniSTS	Rnor5.0
RGSC_v3.4	3	163,296,951 - 163,297,154	UniSTS	RGSC3.4
Celera	3	160,355,034 - 160,355,237	UniSTS
RH 3.4 Map	3	1494.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

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Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055101 ⟹ ENSRNOP00000051976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	181,562,955 - 181,574,727 (+)	Ensembl
mRatBN7.2 Ensembl	3	161,144,548 - 161,156,300 (+)	Ensembl
Rnor_6.0 Ensembl	3	170,380,719 - 170,392,160 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118376 ⟹ ENSRNOP00000076939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	161,144,828 - 161,154,999 (+)	Ensembl

RefSeq Acc Id:

NM_001013161 ⟹ NP_001013179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,563,240 - 181,574,727 (+)	NCBI
mRatBN7.2	3	161,144,807 - 161,156,294 (+)	NCBI
Rnor_6.0	3	170,380,719 - 170,392,162 (+)	NCBI
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI
RGSC_v3.4	3	163,287,021 - 163,298,464 (+)	RGD
Celera	3	160,345,104 - 160,356,547 (+)	RGD

Sequence:

show sequence

GAGAGCGGGAGACCGAGACCCTGATCAGCGGCAGTCAGGGGAACTGTCATCCTCTTGTGCAGAA
TGTACAGAACCAAAGTGGGCCTGAAGGACCGCCAGCAGCTCTACAAGCTGATCATCAGCCAGCT
GCTCTATGACGGATACATTAGCATCGCCAATGGCCTCATCAACGAGATCAAGCCACAGTCGGTG
TGTGCGCCCTCGGAGCAGCTCCTGCACCTCATCAAGCTAGGGATGGAGAACGATGACACTGCAG
TTCAGTATGCCATTGGTCGCTCTGACACGGTTGCCCCTGGCACAGGGATTGACCTGGAGTTTGA
TGCAGACGTCCAAACAATGTCACCCGAGGCTTCGGAGTATGAAACCTGTTATGTCACCTCCCAC
AAAGGCCCATGCCGAGTGGCCACCTACAGCAGAGATGGGCAGTTGATAGCCACAGGGTCTGCGG
ATGCTTCCATCAAGATACTGGACACAGAGAGGATGCTGGCCAAGAGCGCCATGCCCATCGAGGT
CATGATGAATGAGACTGCACAACAGAACATGGAGAACCACCCAGTGATCCGAACTCTTTACGAC
CATGTGGATGAAGTCACGTGTCTCGCTTTTCACCCAACAGAACAGATCCTGGCCTCCGGCTCAA
GGGATTATACTCTAAAATTGTTTGATTATTCCAAACCCTCTGCAAAAAGAGCCTTTAAATACAT
TCAGGAAGCTGAGATGCTGCGCTCCATCTCGTTCCACCCTTCTGGAGACTTCATCCTGGTCGGG
ACCCAGCATCCCACGCTTCGCCTCTATGACATCAACACCTTCCAGTGTTTCGTCTCCTGCAATC
CCCAAGACCAGCACACCGACGCCATCTGCTCTGTCAACTATAACCCTAGTGCCAACATGTACGT
CACTGGCAGCAAGGACGGCTGCATCAAGCTGTGGGACGGCGTCTCCAATCGCTGCATCACAACC
TTTGAGAAAGCTCACGACGGGGCAGAAGTCTGTTCTGCCATTTTCTCCAAGAATTCCAAGTACA
TCCTCTCAAGTGGAAAAGACTCTGTAGCTAAACTCTGGGAAATATCCACGGGACGGACACTGGT
GAGGTACACAGGCGCAGGGCTGAGTGGACGGCAAGTGCACCGGACACAGGCTGTGTTCAACCAC
ACTGAGGACTATATTTTGCTGCCGGACGAAAGGACCATCAGCCTGTGCTGCTGGGACTCTAGGA
CAGCTGAGCGCAGGAACCTGCTGTCCCTGGGCCACAACAACATTGTGCGCTGCATAGTGCACTC
CCCGACCAACCCTGGCTTCATGACGTGCAGCGACGACTTCCGAGCTCGGTTCTGGTACCGGAGG
TCCACCACTGACTGAACTGGCCCCGCTCTGGGGTTCTTGTCTCAGGACTCTGCCCTCCTCCCTG
TCCTGCCACCGGCTGCGGAAGTGAGCAACTTGCACCATCTGTGGCGGGTGTGTGGCCGCCCAGC
TCCTGCCTTGGATTTGTGGTGGAAGCTCTTTTTTACCTTGGTGTAGAATCGTGGTGGGAAAAGT
CGGAAACAGATCTGTGCAGCTGTCCTGTCACAGTGATTTTGGTGTGGTCTTCACCAGCTTAGCG
AGTGCAGGGCTTGGCACGGCCTTCAACTCTCGTGCCTGGAGAAGGACAGAATATGGAAGTACTT
CCTGGGCCTCGGGTCACACTTGTCTCCTCCTATGCTGTCCCTCCCCTTCTGTATTTTCTTTCCA
GATGCATTTTGGCACACAAGGAGGGCCACATCTCTGAGGACCTGGGTCCCATGTGGAACCACCT
TGCAGGGATCCCAGTCCCTTCCTGAGGTGACATCATCGTCCTGGTAATAAAGCTCAGATGCACA
ACCTCACTGTTCCTCCTCCTTCCCGTCAAATCAAACGAAGGCTCCTGGCCTCCCGTCTTCCATC
CTGCAGCGTCCTCTGGGTACCAGCTGTACTTGCTGGTAGGATCCAGAACTGGCCTGCAAGCCCT
GTGGAGCAGGAGCCAGCCTGGGCTACATTAGCCCCCTTTTCACACCTTAATCCCAGCTCTTGAG
AGGCAGAGGCAGGTGGTTCTCTGTGAGATCCTAGCCTGGTCTAAATAGTGAGCTCCAGGGCAGC
CAGGGCTACACAGTGAAGCCTTGTCTCAGAAAGAGGAGGGAATGATCCGATCTACTCAGTTCAA
GCCACCAGAGCCCACTGTCCCCAGCCGAGGGTGCAGGAGGGTGCAGGGGCCTCACTCTTGGAAG
GTTGCTGCAGCACCCACGTCTGGTACATTTTTCTCTCTTGAAGTGTTTGGGAAGCTGGCAGTAT
TCTCTCTGTGTTAAGTCCCATGTAGGCGGCCCAGCCCTGCATGACCCACTTACTAACAAAGTCT
GCTTCCTGTTTCTCCTGAAGAGGAATCAGGAGCTGGGCAGAAGTACCTGGAAATGGTGTGAGGT
CACCAATTAAGCAGTGACCAGGCCCCAGTAAGTCAGTCCCGAGTTGTGAGAACTTCGGCATAAA
AGGTCTGTCCCAGCCTCACCACTGGGTTTATGGTTGTAGGCGTAAAGAGCTGTATTTCTGTCCG
CAATAAGTGTTAACTGACACTTTTATTTTACATTCTGACTTTCAGGTATTTGATCCTGGCTACC
CATAGGTTATAAGAAAGCTGATGGACAGGGACAGGGACAACCCGTTCTGTCTAGGCAAGCTTTG
CTCTTCTTCCTCTAGAGTCCCTGTTGCTCTCTGGCTATGACACTACAGAGCAGACTTGTCACCT
CTGTTCCCACCCACACTCCCAGCACAAGATGCCAGGGTGCTGCAGTCACTTGTGAATTAAAATG
ATGCCACTTCGTGCAGCCTCTGCTGGGCTGGTCTCAAGGGCCGGGAGTTTCAGGGCTGACAGGT
GCAGGACGGAGATGCTCTTCTGTTTCCAAAACAGTTTCCTCCTCTCTCGCTGCCTTCCTCTCTC
CTTCCTTTTAAAAGCCGCATTAACGTTTGAGCTGGTGTACATGTCGAGAGTATCACACAGACTC
ATTCTCCTCACAGAACATCCCGCTAATTGTACCACATAACACCCTGGCATTGAATGAAGAATTT
ATATCTGGTCAGGATAACCTTCTATGTTGTTTTTTAAAGATGTGATTTCTAAAATAAATTTTTT
ATATCACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415876 ⟹ NP_001402805

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,562,955 - 181,574,727 (+)	NCBI
mRatBN7.2	3	161,144,522 - 161,156,294 (+)	NCBI

RefSeq Acc Id:

NM_001415877 ⟹ NP_001402806

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,562,955 - 181,574,727 (+)	NCBI
mRatBN7.2	3	161,144,522 - 161,156,294 (+)	NCBI

RefSeq Acc Id:

XM_006235681 ⟹ XP_006235743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,563,187 - 181,573,436 (+)	NCBI
mRatBN7.2	3	161,144,715 - 161,156,294 (+)	NCBI
Rnor_6.0	3	170,380,599 - 170,392,162 (+)	NCBI
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI

Sequence:

show sequence

CAGGCTTGCGAGTGAGCGGGGACTTGCTCGGCGCTCGGCTGCATGCCCTTTGCACGTGCGCACT
GAGTGTGCACTCAGAGCGATCGATCGGGCACGATTCGCGCCTCCATTTTTCTAGAAGAGAGCGG
GAGACCGAGACCCTGATCAGCGGAATGTACAGAACCAAAGTGGGCCTGAAGGACCGCCAGCAGC
TCTACAAGCTGATCATCAGCCAGCTGCTCTATGACGGATACATTAGCATCGCCAATGGCCTCAT
CAACGAGATCAAGCCACAGTCGGTGTGTGCGCCCTCGGAGCAGCTCCTGCACCTCATCAAGCTA
GGGATGGAGAACGATGACACTGCAGTTCAGTATGCCATTGGTCGCTCTGACACGGTTGCCCCTG
GCACAGGGATTGACCTGGAGTTTGATGCAGACGTCCAAACAATGTCACCCGAGGCTTCGGAGTA
TGAAACCTGTTATGTCACCTCCCACAAAGGCCCATGCCGAGTGGCCACCTACAGCAGAGATGGG
CAGTTGATAGCCACAGGGTCTGCGGATGCTTCCATCAAGATACTGGACACAGAGAGGATGCTGG
CCAAGAGCGCCATGCCCATCGAGGTCATGATGAATGAGACTGCACAACAGAACATGGAGAACCA
CCCAGTGATCCGAACTCTTTACGACCATGTGGATGAAGTCACGTGTCTCGCTTTTCACCCAACA
GAACAGATCCTGGCCTCCGGCTCAAGGGATTATACTCTAAAATTGTTTGATTATTCCAAACCCT
CTGCAAAAAGAGCCTTTAAATACATTCAGGAAGCTGAGATGCTGCGCTCCATCTCGTTCCACCC
TTCTGGAGACTTCATCCTGGTCGGGACCCAGCATCCCACGCTTCGCCTCTATGACATCAACACC
TTCCAGTGTTTCGTCTCCTGCAATCCCCAAGACCAGCACACCGACGCCATCTGCTCTGTCAACT
ATAACCCTAGTGCCAACATGTACGTCACTGGCAGCAAGGACGGCTGCATCAAGCTGTGGGACGG
CGTCTCCAATCGCTGCATCACAACCTTTGAGAAAGCTCACGACGGGGCAGAAGTCTGTTCTGCC
ATTTTCTCCAAGAATTCCAAGTACATCCTCTCAAGTGGAAAAGACTCTGTAGCTAAACTCTGGG
AAATATCCACGGGACGGACACTGGTGAGGTACACAGGCGCAGGGCTGAGTGGACGGCAAGTGCA
CCGGACACAGGCTGTGTTCAACCACACTGAGGACTATATTTTGCTGCCGGACGAAAGGACCATC
AGCCTGTGCTGCTGGGACTCTAGGACAGCTGAGCGCAGGAACCTGCTGTCCCTGGGCCACAACA
ACATTGTGCGCTGCATAGTGCACTCCCCGACCAACCCTGGCTTCATGACGTGCAGCGACGACTT
CCGAGCTCGGTTCTGGTACCGGAGGTCCACCACTGACTGAACTGGCCCCGCTCTGGGGTTCTTG
TCTCAGGACTCTGCCCTCCTCCCTGTCCTGCCACCGGCTGCGGAAGTGAGCAACTTGCACCATC
TGTGGCGGGTGTGTGGCCGCCCAGCTCCTGCCTTGGATTTGTGGTGGAAGCTCTTTTTTACCTT
GGTGTAGAATCGTGGTGGGAAAAGTCGGAAACAGATCTGTGCAGCTGTCCTGTCACAGTGATTT
TGGTGTGGTCTTCACCAGCTTAGCGAGTGCAGGGCTTGGCACGGCCTTCAACTCTCGTGCCTGG
AGAAGGACAGAATATGGAAGTACTTCCTGGGCCTCGGGTCACACTTGTCTCCTCCTATGCTGTC
CCTCCCCTTCTGTATTTTCTTTCCAGATGCATTTTGGCACACAAGGAGGGCCACATCTCTGAGG
ACCTGGGTCCCATGTGGAACCACCTTGCAGGGATCCCAGTCCCTTCCTGAGGTGACATCATCGT
CCTGGTAATAAAGCTCAGATGCACAACCTCACTGTTCCTCCTCCTTCCCGTCAAATCAAACGAA
GGCTCCTGGCCTCCCGTCTTCCATCCTGCAGCGTCCTCTGGGTACCAGCTGTACTTGCTGGTAG
GATCCAGAACTGGCCTGCAAGCCCTGTGGAGCAGGAGCCAGCCTGGGCTACATTAGCCCCCTTT
TCACACCTTAATCCCAGCTCTTGAGAGGCAGAGGCAGGTGGTTCTCTGTGAGATCCTAGCCTGG
TCTAAATAGTGAGCTCCAGGGCAGCCAGGGCTACACAGTGAAGCCTTGTCTCAGAAAGAGGAGG
GAATGATCCGATCTACTCAGTTCAAGCCACCAGAGCCCACTGTCCCCAGCCGAGGGTGCAGGAG
GGTGCAGGGGCCTCACTCTTGGAAGGTTGCTGCAGCACCCACGTCTGGTACATTTTTCTCTCTT
GAAGTGTTTGGGAAGCTGGCAGTATTCTCTCTGTGTTAAGTCCCATGTAGGCGGCCCAGCCCTG
CATGACCCACTTACTAACAAAGTCTGCTTCCTGTTTCTCCTGAAGAGGAATCAGGAGCTGGGCA
GAAGTACCTGGAAATGGTGTGAGGTCACCAATTAAGCAGTGACCAGGCCCCAGTAAGTCAGTCC
CGAGTTGTGAGAACTTCGGCATAAAAGGTCTGTCCCAGCCTCACCACTGGGTTTATGGTTGTAG
GCGTAAAGAGCTGTATTTCTGTCCGCAATAAGTGTTAACTGACACTTTTATTTTACATTCTGAC
TTTCAGGTATTTGATCCTGGCTACCCATAGGTTATAAGAAAGCTGATGGACAGGGACAGGGACA
ACCCGTTCTGTCTAGGCAAGCTTTGCTCTTCTTCCTCTAGAGTCCCTGTTGCTCTCTGGCTATG
ACACTACAGAGCAGACTTGTCACCTCTGTTCCCACCCACACTCCCAGCACAAGATGCCAGGGTG
CTGCAGTCACTTGTGAATTAAAATGATGCCACTTCGTGCAGCCTCTGCTGGGCTGGTCTCAAGG
GCCGGGAGTTTCAGGGCTGACAGGTGCAGGACGGAGATGCTCTTCTGTTTCCAAAACAGTTTCC
TCCTCTCTCGCTGCCTTCCTCTCTCCTTCCTTTTAAAAGCCGCATTAACGTTTGAGCTGGTGTA
CATGTCGAGAGTATCACACAGACTCATTCTCCTCACAGAACATCCCGCTAATTGTACCACATAA
CACCCTGGCATTGAATGAAGAATTTATATCTGGTCAGGATAACCTTCTATGTTGTTTTTTAAAG
ATGTGATTTCTAAAATAAATTTTTTATATCACAGCAA

hide sequence

RefSeq Acc Id:

XM_006235682 ⟹ XP_006235744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,563,179 - 181,573,436 (+)	NCBI
mRatBN7.2	3	161,144,746 - 161,156,294 (+)	NCBI
Rnor_6.0	3	170,380,667 - 170,392,162 (+)	NCBI
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI

Sequence:

show sequence

GTGCACTCAGAGCGATCGATCGGGCACGATTCGCGCCTCCATTTTTCTAGAAGAGAGCGGGAGA
CCGAGACCCTGATCAGCGGTCAGGGGAACTGTCATCCTCTTGTGCAGAATGTACAGAACCAAAG
TGGGCCTGAAGGACCGCCAGCAGCTCTACAAGCTGATCATCAGCCAGCTGCTCTATGACGGATA
CATTAGCATCGCCAATGGCCTCATCAACGAGATCAAGCCACAGTCGGTGTGTGCGCCCTCGGAG
CAGCTCCTGCACCTCATCAAGCTAGGGATGGAGAACGATGACACTGCAGTTCAGTATGCCATTG
GTCGCTCTGACACGGTTGCCCCTGGCACAGGGATTGACCTGGAGTTTGATGCAGACGTCCAAAC
AATGTCACCCGAGGCTTCGGAGTATGAAACCTGTTATGTCACCTCCCACAAAGGCCCATGCCGA
GTGGCCACCTACAGCAGAGATGGGCAGTTGATAGCCACAGGGTCTGCGGATGCTTCCATCAAGA
TACTGGACACAGAGAGGATGCTGGCCAAGAGCGCCATGCCCATCGAGGTCATGATGAATGAGAC
TGCACAACAGAACATGGAGAACCACCCAGTGATCCGAACTCTTTACGACCATGTGGATGAAGTC
ACGTGTCTCGCTTTTCACCCAACAGAACAGATCCTGGCCTCCGGCTCAAGGGATTATACTCTAA
AATTGTTTGATTATTCCAAACCCTCTGCAAAAAGAGCCTTTAAATACATTCAGGAAGCTGAGAT
GCTGCGCTCCATCTCGTTCCACCCTTCTGGAGACTTCATCCTGGTCGGGACCCAGCATCCCACG
CTTCGCCTCTATGACATCAACACCTTCCAGTGTTTCGTCTCCTGCAATCCCCAAGACCAGCACA
CCGACGCCATCTGCTCTGTCAACTATAACCCTAGTGCCAACATGTACGTCACTGGCAGCAAGGA
CGGCTGCATCAAGCTGTGGGACGGCGTCTCCAATCGCTGCATCACAACCTTTGAGAAAGCTCAC
GACGGGGCAGAAGTCTGTTCTGCCATTTTCTCCAAGAATTCCAAGTACATCCTCTCAAGTGGAA
AAGACTCTGTAGCTAAACTCTGGGAAATATCCACGGGACGGACACTGGTGAGGTACACAGGCGC
AGGGCTGAGTGGACGGCAAGTGCACCGGACACAGGCTGTGTTCAACCACACTGAGGACTATATT
TTGCTGCCGGACGAAAGGACCATCAGCCTGTGCTGCTGGGACTCTAGGACAGCTGAGCGCAGGA
ACCTGCTGTCCCTGGGCCACAACAACATTGTGCGCTGCATAGTGCACTCCCCGACCAACCCTGG
CTTCATGACGTGCAGCGACGACTTCCGAGCTCGGTTCTGGTACCGGAGGTCCACCACTGACTGA
ACTGGCCCCGCTCTGGGGTTCTTGTCTCAGGACTCTGCCCTCCTCCCTGTCCTGCCACCGGCTG
CGGAAGTGAGCAACTTGCACCATCTGTGGCGGGTGTGTGGCCGCCCAGCTCCTGCCTTGGATTT
GTGGTGGAAGCTCTTTTTTACCTTGGTGTAGAATCGTGGTGGGAAAAGTCGGAAACAGATCTGT
GCAGCTGTCCTGTCACAGTGATTTTGGTGTGGTCTTCACCAGCTTAGCGAGTGCAGGGCTTGGC
ACGGCCTTCAACTCTCGTGCCTGGAGAAGGACAGAATATGGAAGTACTTCCTGGGCCTCGGGTC
ACACTTGTCTCCTCCTATGCTGTCCCTCCCCTTCTGTATTTTCTTTCCAGATGCATTTTGGCAC
ACAAGGAGGGCCACATCTCTGAGGACCTGGGTCCCATGTGGAACCACCTTGCAGGGATCCCAGT
CCCTTCCTGAGGTGACATCATCGTCCTGGTAATAAAGCTCAGATGCACAACCTCACTGTTCCTC
CTCCTTCCCGTCAAATCAAACGAAGGCTCCTGGCCTCCCGTCTTCCATCCTGCAGCGTCCTCTG
GGTACCAGCTGTACTTGCTGGTAGGATCCAGAACTGGCCTGCAAGCCCTGTGGAGCAGGAGCCA
GCCTGGGCTACATTAGCCCCCTTTTCACACCTTAATCCCAGCTCTTGAGAGGCAGAGGCAGGTG
GTTCTCTGTGAGATCCTAGCCTGGTCTAAATAGTGAGCTCCAGGGCAGCCAGGGCTACACAGTG
AAGCCTTGTCTCAGAAAGAGGAGGGAATGATCCGATCTACTCAGTTCAAGCCACCAGAGCCCAC
TGTCCCCAGCCGAGGGTGCAGGAGGGTGCAGGGGCCTCACTCTTGGAAGGTTGCTGCAGCACCC
ACGTCTGGTACATTTTTCTCTCTTGAAGTGTTTGGGAAGCTGGCAGTATTCTCTCTGTGTTAAG
TCCCATGTAGGCGGCCCAGCCCTGCATGACCCACTTACTAACAAAGTCTGCTTCCTGTTTCTCC
TGAAGAGGAATCAGGAGCTGGGCAGAAGTACCTGGAAATGGTGTGAGGTCACCAATTAAGCAGT
GACCAGGCCCCAGTAAGTCAGTCCCGAGTTGTGAGAACTTCGGCATAAAAGGTCTGTCCCAGCC
TCACCACTGGGTTTATGGTTGTAGGCGTAAAGAGCTGTATTTCTGTCCGCAATAAGTGTTAACT
GACACTTTTATTTTACATTCTGACTTTCAGGTATTTGATCCTGGCTACCCATAGGTTATAAGAA
AGCTGATGGACAGGGACAGGGACAACCCGTTCTGTCTAGGCAAGCTTTGCTCTTCTTCCTCTAG
AGTCCCTGTTGCTCTCTGGCTATGACACTACAGAGCAGACTTGTCACCTCTGTTCCCACCCACA
CTCCCAGCACAAGATGCCAGGGTGCTGCAGTCACTTGTGAATTAAAATGATGCCACTTCGTGCA
GCCTCTGCTGGGCTGGTCTCAAGGGCCGGGAGTTTCAGGGCTGACAGGTGCAGGACGGAGATGC
TCTTCTGTTTCCAAAACAGTTTCCTCCTCTCTCGCTGCCTTCCTCTCTCCTTCCTTTTAAAAGC
CGCATTAACGTTTGAGCTGGTGTACATGTCGAGAGTATCACACAGACTCATTCTCCTCACAGAA
CATCCCGCTAATTGTACCACATAACACCCTGGCATTGAATGAAGAATTTATATCTGGTCAGGAT
AACCTTCTATGTTGTTTTTTAAAGATGTGATTTCTAAAATAAATTTTTTATATCACAGCAA

hide sequence

RefSeq Acc Id:

XM_006235683 ⟹ XP_006235745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,562,953 - 181,573,436 (+)	NCBI
mRatBN7.2	3	161,144,553 - 161,156,294 (+)	NCBI
Rnor_6.0	3	170,380,413 - 170,392,162 (+)	NCBI
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI

Sequence:

show sequence

CCCGGAAGTGGTGCACCAACGGCCTGTCCGATCTACGGCCGTTCTATCGCCCGCCGTGCTCTCC
AAGGATCGGGCGTTTGCCGGTCACTCACAGTCCTTTGGATTCAAGGCTGTCGCGGAGGTGATCA
GCTCGGAGAAGGTGAATGAGCGTCTCGAACGTGCCACAGTCAGGGGAACTGTCATCCTCTTGTG
CAGAATGTACAGAACCAAAGTGGGCCTGAAGGACCGCCAGCAGCTCTACAAGCTGATCATCAGC
CAGCTGCTCTATGACGGATACATTAGCATCGCCAATGGCCTCATCAACGAGATCAAGCCACAGT
CGGTGTGTGCGCCCTCGGAGCAGCTCCTGCACCTCATCAAGCTAGGGATGGAGAACGATGACAC
TGCAGTTCAGTATGCCATTGGTCGCTCTGACACGGTTGCCCCTGGCACAGGGATTGACCTGGAG
TTTGATGCAGACGTCCAAACAATGTCACCCGAGGCTTCGGAGTATGAAACCTGTTATGTCACCT
CCCACAAAGGCCCATGCCGAGTGGCCACCTACAGCAGAGATGGGCAGTTGATAGCCACAGGGTC
TGCGGATGCTTCCATCAAGATACTGGACACAGAGAGGATGCTGGCCAAGAGCGCCATGCCCATC
GAGGTCATGATGAATGAGACTGCACAACAGAACATGGAGAACCACCCAGTGATCCGAACTCTTT
ACGACCATGTGGATGAAGTCACGTGTCTCGCTTTTCACCCAACAGAACAGATCCTGGCCTCCGG
CTCAAGGGATTATACTCTAAAATTGTTTGATTATTCCAAACCCTCTGCAAAAAGAGCCTTTAAA
TACATTCAGGAAGCTGAGATGCTGCGCTCCATCTCGTTCCACCCTTCTGGAGACTTCATCCTGG
TCGGGACCCAGCATCCCACGCTTCGCCTCTATGACATCAACACCTTCCAGTGTTTCGTCTCCTG
CAATCCCCAAGACCAGCACACCGACGCCATCTGCTCTGTCAACTATAACCCTAGTGCCAACATG
TACGTCACTGGCAGCAAGGACGGCTGCATCAAGCTGTGGGACGGCGTCTCCAATCGCTGCATCA
CAACCTTTGAGAAAGCTCACGACGGGGCAGAAGTCTGTTCTGCCATTTTCTCCAAGAATTCCAA
GTACATCCTCTCAAGTGGAAAAGACTCTGTAGCTAAACTCTGGGAAATATCCACGGGACGGACA
CTGGTGAGGTACACAGGCGCAGGGCTGAGTGGACGGCAAGTGCACCGGACACAGGCTGTGTTCA
ACCACACTGAGGACTATATTTTGCTGCCGGACGAAAGGACCATCAGCCTGTGCTGCTGGGACTC
TAGGACAGCTGAGCGCAGGAACCTGCTGTCCCTGGGCCACAACAACATTGTGCGCTGCATAGTG
CACTCCCCGACCAACCCTGGCTTCATGACGTGCAGCGACGACTTCCGAGCTCGGTTCTGGTACC
GGAGGTCCACCACTGACTGAACTGGCCCCGCTCTGGGGTTCTTGTCTCAGGACTCTGCCCTCCT
CCCTGTCCTGCCACCGGCTGCGGAAGTGAGCAACTTGCACCATCTGTGGCGGGTGTGTGGCCGC
CCAGCTCCTGCCTTGGATTTGTGGTGGAAGCTCTTTTTTACCTTGGTGTAGAATCGTGGTGGGA
AAAGTCGGAAACAGATCTGTGCAGCTGTCCTGTCACAGTGATTTTGGTGTGGTCTTCACCAGCT
TAGCGAGTGCAGGGCTTGGCACGGCCTTCAACTCTCGTGCCTGGAGAAGGACAGAATATGGAAG
TACTTCCTGGGCCTCGGGTCACACTTGTCTCCTCCTATGCTGTCCCTCCCCTTCTGTATTTTCT
TTCCAGATGCATTTTGGCACACAAGGAGGGCCACATCTCTGAGGACCTGGGTCCCATGTGGAAC
CACCTTGCAGGGATCCCAGTCCCTTCCTGAGGTGACATCATCGTCCTGGTAATAAAGCTCAGAT
GCACAACCTCACTGTTCCTCCTCCTTCCCGTCAAATCAAACGAAGGCTCCTGGCCTCCCGTCTT
CCATCCTGCAGCGTCCTCTGGGTACCAGCTGTACTTGCTGGTAGGATCCAGAACTGGCCTGCAA
GCCCTGTGGAGCAGGAGCCAGCCTGGGCTACATTAGCCCCCTTTTCACACCTTAATCCCAGCTC
TTGAGAGGCAGAGGCAGGTGGTTCTCTGTGAGATCCTAGCCTGGTCTAAATAGTGAGCTCCAGG
GCAGCCAGGGCTACACAGTGAAGCCTTGTCTCAGAAAGAGGAGGGAATGATCCGATCTACTCAG
TTCAAGCCACCAGAGCCCACTGTCCCCAGCCGAGGGTGCAGGAGGGTGCAGGGGCCTCACTCTT
GGAAGGTTGCTGCAGCACCCACGTCTGGTACATTTTTCTCTCTTGAAGTGTTTGGGAAGCTGGC
AGTATTCTCTCTGTGTTAAGTCCCATGTAGGCGGCCCAGCCCTGCATGACCCACTTACTAACAA
AGTCTGCTTCCTGTTTCTCCTGAAGAGGAATCAGGAGCTGGGCAGAAGTACCTGGAAATGGTGT
GAGGTCACCAATTAAGCAGTGACCAGGCCCCAGTAAGTCAGTCCCGAGTTGTGAGAACTTCGGC
ATAAAAGGTCTGTCCCAGCCTCACCACTGGGTTTATGGTTGTAGGCGTAAAGAGCTGTATTTCT
GTCCGCAATAAGTGTTAACTGACACTTTTATTTTACATTCTGACTTTCAGGTATTTGATCCTGG
CTACCCATAGGTTATAAGAAAGCTGATGGACAGGGACAGGGACAACCCGTTCTGTCTAGGCAAG
CTTTGCTCTTCTTCCTCTAGAGTCCCTGTTGCTCTCTGGCTATGACACTACAGAGCAGACTTGT
CACCTCTGTTCCCACCCACACTCCCAGCACAAGATGCCAGGGTGCTGCAGTCACTTGTGAATTA
AAATGATGCCACTTCGTGCAGCCTCTGCTGGGCTGGTCTCAAGGGCCGGGAGTTTCAGGGCTGA
CAGGTGCAGGACGGAGATGCTCTTCTGTTTCCAAAACAGTTTCCTCCTCTCTCGCTGCCTTCCT
CTCTCCTTCCTTTTAAAAGCCGCATTAACGTTTGAGCTGGTGTACATGTCGAGAGTATCACACA
GACTCATTCTCCTCACAGAACATCCCGCTAATTGTACCACATAACACCCTGGCATTGAATGAAG
AATTTATATCTGGTCAGGATAACCTTCTATGTTGTTTTTTAAAGATGTGATTTCTAAAATAAAT
TTTTTATATCACAGCAA

hide sequence

RefSeq Acc Id:

XM_006235686 ⟹ XP_006235748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,562,983 - 181,573,436 (+)	NCBI
mRatBN7.2	3	161,144,550 - 161,156,294 (+)	NCBI
Rnor_6.0	3	170,380,413 - 170,392,162 (+)	NCBI
Rnor_5.0	3	176,456,203 - 176,467,944 (+)	NCBI

Sequence:

show sequence

CCCGGAAGTGGTGCACCAACGGCCTGTCCGATCTACGGCCGTTCTATCGCCCGCCGTGCTCTCC
AAGGATCGGGCGTTTGCCGGTCACTCACAGTCCTTTGGATTCAAGGCTGTCGCGGAGGTGATCA
GCTCGGAGAAGTCAGGGGAACTGTCATCCTCTTGTGCAGAATGTACAGAACCAAAGTGGGCCTG
AAGGACCGCCAGCAGCTCTACAAGCTGATCATCAGCCAGCTGCTCTATGACGGATACATTAGCA
TCGCCAATGGCCTCATCAACGAGATCAAGCCACAGTCGGTGTGTGCGCCCTCGGAGCAGCTCCT
GCACCTCATCAAGCTAGGGATGGAGAACGATGACACTGCAGTTCAGTATGCCATTGGTCGCTCT
GACACGGTTGCCCCTGGCACAGGGATTGACCTGGAGTTTGATGCAGACGTCCAAACAATGTCAC
CCGAGGCTTCGGAGTATGAAACCTGTTATGTCACCTCCCACAAAGGCCCATGCCGAGTGGCCAC
CTACAGCAGAGATGGGCAGTTGATAGCCACAGGGTCTGCGGATGCTTCCATCAAGATACTGGAC
ACAGAGAGGATGCTGGCCAAGAGCGCCATGCCCATCGAGGTCATGATGAATGAGACTGCACAAC
AGAACATGGAGAACCACCCAGTGATCCGAACTCTTTACGACCATGTGGATGAAGTCACGTGTCT
CGCTTTTCACCCAACAGAACAGATCCTGGCCTCCGGCTCAAGGGATTATACTCTAAAATTGTTT
GATTATTCCAAACCCTCTGCAAAAAGAGCCTTTAAATACATTCAGGAAGCTGAGATGCTGCGCT
CCATCTCGTTCCACCCTTCTGGAGACTTCATCCTGGTCGGGACCCAGCATCCCACGCTTCGCCT
CTATGACATCAACACCTTCCAGTGTTTCGTCTCCTGCAATCCCCAAGACCAGCACACCGACGCC
ATCTGCTCTGTCAACTATAACCCTAGTGCCAACATGTACGTCACTGGCAGCAAGGACGGCTGCA
TCAAGCTGTGGGACGGCGTCTCCAATCGCTGCATCACAACCTTTGAGAAAGCTCACGACGGGGC
AGAAGTCTGTTCTGCCATTTTCTCCAAGAATTCCAAGTACATCCTCTCAAGTGGAAAAGACTCT
GTAGCTAAACTCTGGGAAATATCCACGGGACGGACACTGGTGAGGTACACAGGCGCAGGGCTGA
GTGGACGGCAAGTGCACCGGACACAGGCTGTGTTCAACCACACTGAGGACTATATTTTGCTGCC
GGACGAAAGGACCATCAGCCTGTGCTGCTGGGACTCTAGGACAGCTGAGCGCAGGAACCTGCTG
TCCCTGGGCCACAACAACATTGTGCGCTGCATAGTGCACTCCCCGACCAACCCTGGCTTCATGA
CGTGCAGCGACGACTTCCGAGCTCGGTTCTGGTACCGGAGGTCCACCACTGACTGAACTGGCCC
CGCTCTGGGGTTCTTGTCTCAGGACTCTGCCCTCCTCCCTGTCCTGCCACCGGCTGCGGAAGTG
AGCAACTTGCACCATCTGTGGCGGGTGTGTGGCCGCCCAGCTCCTGCCTTGGATTTGTGGTGGA
AGCTCTTTTTTACCTTGGTGTAGAATCGTGGTGGGAAAAGTCGGAAACAGATCTGTGCAGCTGT
CCTGTCACAGTGATTTTGGTGTGGTCTTCACCAGCTTAGCGAGTGCAGGGCTTGGCACGGCCTT
CAACTCTCGTGCCTGGAGAAGGACAGAATATGGAAGTACTTCCTGGGCCTCGGGTCACACTTGT
CTCCTCCTATGCTGTCCCTCCCCTTCTGTATTTTCTTTCCAGATGCATTTTGGCACACAAGGAG
GGCCACATCTCTGAGGACCTGGGTCCCATGTGGAACCACCTTGCAGGGATCCCAGTCCCTTCCT
GAGGTGACATCATCGTCCTGGTAATAAAGCTCAGATGCACAACCTCACTGTTCCTCCTCCTTCC
CGTCAAATCAAACGAAGGCTCCTGGCCTCCCGTCTTCCATCCTGCAGCGTCCTCTGGGTACCAG
CTGTACTTGCTGGTAGGATCCAGAACTGGCCTGCAAGCCCTGTGGAGCAGGAGCCAGCCTGGGC
TACATTAGCCCCCTTTTCACACCTTAATCCCAGCTCTTGAGAGGCAGAGGCAGGTGGTTCTCTG
TGAGATCCTAGCCTGGTCTAAATAGTGAGCTCCAGGGCAGCCAGGGCTACACAGTGAAGCCTTG
TCTCAGAAAGAGGAGGGAATGATCCGATCTACTCAGTTCAAGCCACCAGAGCCCACTGTCCCCA
GCCGAGGGTGCAGGAGGGTGCAGGGGCCTCACTCTTGGAAGGTTGCTGCAGCACCCACGTCTGG
TACATTTTTCTCTCTTGAAGTGTTTGGGAAGCTGGCAGTATTCTCTCTGTGTTAAGTCCCATGT
AGGCGGCCCAGCCCTGCATGACCCACTTACTAACAAAGTCTGCTTCCTGTTTCTCCTGAAGAGG
AATCAGGAGCTGGGCAGAAGTACCTGGAAATGGTGTGAGGTCACCAATTAAGCAGTGACCAGGC
CCCAGTAAGTCAGTCCCGAGTTGTGAGAACTTCGGCATAAAAGGTCTGTCCCAGCCTCACCACT
GGGTTTATGGTTGTAGGCGTAAAGAGCTGTATTTCTGTCCGCAATAAGTGTTAACTGACACTTT
TATTTTACATTCTGACTTTCAGGTATTTGATCCTGGCTACCCATAGGTTATAAGAAAGCTGATG
GACAGGGACAGGGACAACCCGTTCTGTCTAGGCAAGCTTTGCTCTTCTTCCTCTAGAGTCCCTG
TTGCTCTCTGGCTATGACACTACAGAGCAGACTTGTCACCTCTGTTCCCACCCACACTCCCAGC
ACAAGATGCCAGGGTGCTGCAGTCACTTGTGAATTAAAATGATGCCACTTCGTGCAGCCTCTGC
TGGGCTGGTCTCAAGGGCCGGGAGTTTCAGGGCTGACAGGTGCAGGACGGAGATGCTCTTCTGT
TTCCAAAACAGTTTCCTCCTCTCTCGCTGCCTTCCTCTCTCCTTCCTTTTAAAAGCCGCATTAA
CGTTTGAGCTGGTGTACATGTCGAGAGTATCACACAGACTCATTCTCCTCACAGAACATCCCGC
TAATTGTACCACATAACACCCTGGCATTGAATGAAGAATTTATATCTGGTCAGGATAACCTTCT
ATGTTGTTTTTTAAAGATGTGATTTCTAAAATAAATTTTTTATATCACAGCAA

hide sequence

RefSeq Acc Id:

XM_039105146 ⟹ XP_038961074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,562,980 - 181,573,436 (+)	NCBI
mRatBN7.2	3	161,144,551 - 161,156,294 (+)	NCBI

RefSeq Acc Id:

XR_010064638

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	181,563,183 - 181,572,868 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013179	(Get FASTA)	NCBI Sequence Viewer
	NP_001402805	(Get FASTA)	NCBI Sequence Viewer
	NP_001402806	(Get FASTA)	NCBI Sequence Viewer
	XP_006235743	(Get FASTA)	NCBI Sequence Viewer
	XP_006235744	(Get FASTA)	NCBI Sequence Viewer
	XP_006235745	(Get FASTA)	NCBI Sequence Viewer
	XP_006235748	(Get FASTA)	NCBI Sequence Viewer
	XP_038961074	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91381	(Get FASTA)	NCBI Sequence Viewer
	EDL85145	(Get FASTA)	NCBI Sequence Viewer
	EDL85146	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051976
	ENSRNOP00000051976.2
GenBank Protein	Q5BJQ6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013179 ⟸ NM_001013161

- UniProtKB:

Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTA
VQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSA
DASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGS
RDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN
PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY
ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSR
TAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRSTTD

hide sequence

RefSeq Acc Id:	XP_006235745 ⟸ XM_006235683
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTA VQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSA DASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGS RDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSR TAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRSTTD hide sequence

RefSeq Acc Id:	XP_006235748 ⟸ XM_006235686
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTA VQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSA DASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGS RDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSR TAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRSTTD hide sequence

RefSeq Acc Id:	XP_006235743 ⟸ XM_006235681
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTA VQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSA DASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGS RDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSR TAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRSTTD hide sequence

RefSeq Acc Id:	XP_006235744 ⟸ XM_006235682
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTA VQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSA DASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGS RDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN PQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKY ILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSR TAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRSTTD hide sequence

Ensembl Acc Id:

ENSRNOP00000051976 ⟸ ENSRNOT00000055101

RefSeq Acc Id:	XP_038961074 ⟸ XM_039105146
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076939 ⟸ ENSRNOT00000118376

RefSeq Acc Id:	NP_001402805 ⟸ NM_001415876
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402806 ⟸ NM_001415877
- UniProtKB:	Q5BJQ6 (UniProtKB/Swiss-Prot), A6KKX0 (UniProtKB/TrEMBL), A0A8I5Y796 (UniProtKB/TrEMBL)

Protein Domains

Cleavage stimulation factor subunit 1 dimerisation

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJQ6-F1-model_v2	AlphaFold	Q5BJQ6	1-431	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692706

Promoter ID:

EPDNEW_R3230

Type:

initiation region

Name:

Cstf1_1

Description:

cleavage stimulation factor subunit 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	170,380,675 - 170,380,735	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309267	AgrOrtholog
BioCyc Gene	G2FUF-46540	BioCyc
Ensembl Genes	ENSRNOG00000004775	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000055101	ENTREZGENE
	ENSRNOT00000055101.3	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.960.50	UniProtKB/Swiss-Prot
	2.130.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7320917	IMAGE-MGC_LOAD
InterPro	CstF1-like	UniProtKB/Swiss-Prot
	CSTF1_dimer	UniProtKB/Swiss-Prot
	CSTF1_dimer_sf	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat	UniProtKB/Swiss-Prot
	WD40_repeat_CS	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:311670	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109461	IMAGE-MGC_LOAD
NCBI Gene	311670	ENTREZGENE
PANTHER	CLEAVAGE STIMULATION FACTOR SUBUNIT 1	UniProtKB/Swiss-Prot
	PTHR44133	UniProtKB/Swiss-Prot
Pfam	CSTF1_dimer	UniProtKB/Swiss-Prot
	WD40	UniProtKB/Swiss-Prot
PhenoGen	Cstf1	PhenoGen
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot
	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004775	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y796	ENTREZGENE
	A6KKX0	ENTREZGENE, UniProtKB/TrEMBL
	CSTF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Cstf1	cleavage stimulation factor subunit 1	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-19	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-10	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	Cstf1_predicted	cleavage stimulation factor, 3' pre-RNA, subunit 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Cstf1_predicted	cleavage stimulation factor, 3' pre-RNA, subunit 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)