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Gene: Wdr33 (WD repeat domain 33) Rattus norvegicus

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Symbol:

Wdr33

Name:

WD repeat domain 33

RGD ID:

1309230

Description:

Predicted to be involved in mRNA 3'-end processing. Predicted to be located in nucleus. Orthologous to human WDR33 (WD repeat domain 33); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307524; pre-mRNA 3' end processing protein WDR33; WD repeat-containing protein 33

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR33 (WD repeat domain 33)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Wdr33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Wdr33 (WD repeat domain 33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	COL5A2 (collagen type V alpha 2 chain)	HGNC	Inparanoid
Homo sapiens (human):	OR5AU1 (olfactory receptor family 5 subfamily AU member 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WDR33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	WDR33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoInspector\|PhylomeDB)
Mus musculus (house mouse):	Wdr33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	wdr33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wdr33 (WD repeat domain 33)	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PFS2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PFS2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Wdr33	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Wdr33	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pfs-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pfs-2	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wdr33	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wdr33	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,706,708 - 23,812,985 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,706,602 - 23,809,708 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,432,233 - 23,535,460 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,432,191 - 23,468,597 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,560,579 - 23,663,560 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,309,591 - 24,412,620 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,655,547 - 23,758,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,584,832 - 24,689,681 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,584,900 - 24,689,636 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,302,033 - 24,403,950 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,219,464 - 24,328,893 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,184,843 - 23,287,871 (+)	NCBI		Celera
RGSC_v3.1	18	24,246,048 - 24,356,083 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chloroprene (EXP)

cisplatin (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nitrates (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercitrin (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

troglitazone (ISO)

ursodeoxycholic acid (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA 3'-end processing (IEA,ISO)

Cellular Component

fibrillar center (ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

3'-end pre-mRNA processing pathway (ISO)

RNA polymerase II transcription termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Pre-mRNA 3'-end processing complex assembly and function.	Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.	Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11162572	PMID:22681889

Genomics

Comparative Map Data

Wdr33
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,706,708 - 23,812,985 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,706,602 - 23,809,708 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,432,233 - 23,535,460 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,432,191 - 23,468,597 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,560,579 - 23,663,560 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,309,591 - 24,412,620 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,655,547 - 23,758,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,584,832 - 24,689,681 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,584,900 - 24,689,636 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,302,033 - 24,403,950 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,219,464 - 24,328,893 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,184,843 - 23,287,871 (+)	NCBI		Celera
RGSC_v3.1	18	24,246,048 - 24,356,083 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

WDR33
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	127,701,027 - 127,811,171 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	127,701,027 - 127,811,187 (-)	Ensembl			hg38	GRCh38
GRCh37	2	128,458,601 - 128,568,745 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	128,178,278 - 128,285,215 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	128,178,037 - 128,284,975	NCBI
Celera	2	121,772,751 - 121,879,694 (-)	NCBI		Celera
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,768,042 - 120,874,721 (-)	NCBI		HuRef
CHM1_1	2	128,466,415 - 128,573,757 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	128,136,260 - 128,246,425 (-)	NCBI		T2T-CHM13v2.0

Wdr33
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	31,937,079 - 32,042,040 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	31,937,143 - 32,040,450 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	31,804,057 - 31,908,987 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	31,804,090 - 31,907,397 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	31,963,711 - 32,068,641 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	31,970,295 - 32,050,005 (+)	NCBI		MGSCv36	mm8
Celera	18	32,292,716 - 32,399,466 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	17.85	NCBI

Wdr33
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	2,740,466 - 2,841,376 (+)	Ensembl
ChiLan1.0	NW_004955459	2,740,465 - 2,841,376 (+)	NCBI	ChiLan1.0	ChiLan1.0

WDR33
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	47,832,747 - 47,938,394 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	47,848,994 - 47,953,992 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,465,959 - 32,571,024 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,371,250 - 128,476,083 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,371,250 - 128,476,083 (-)	Ensembl			panPan2	panpan1.1

WDR33
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	22,788,462 - 22,904,610 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	22,788,508 - 23,024,378 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	23,034,606 - 23,152,142 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	24,114,118 - 24,230,735 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	24,115,180 - 24,230,721 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	22,893,968 - 22,934,632 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	23,012,800 - 23,129,479 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	24,144,095 - 24,260,757 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Wdr33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	98,006,836 - 98,112,211 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,505,476 - 43,610,851 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,505,507 - 43,610,851 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR33
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,520,065 - 59,638,879 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	59,519,832 - 59,639,050 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	66,271,930 - 66,371,372 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR33
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,406,083 - 2,511,966 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	2,406,100 - 2,515,016 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	20,243,667 - 20,356,103 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr33
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	14,183,132 - 14,280,795 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	14,183,734 - 14,280,825 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Wdr33
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	12,335,194 - 12,440,441 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Wdr33
450 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	45
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000017075
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	15642280	31610627	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	31610627	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

D18Chm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,499,564 - 23,499,733 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,654,463 - 24,654,630	NCBI	Rnor6.0
Rnor_5.0	18	24,368,444 - 24,368,611	UniSTS	Rnor5.0
RGSC_v3.4	18	24,286,413 - 24,286,580	UniSTS	RGSC3.4
Celera	18	23,252,087 - 23,252,254	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH131944

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	24,619,520 - 24,619,727	NCBI	Rnor6.0
Rnor_5.0	18	24,336,718 - 24,336,925	UniSTS	Rnor5.0
RGSC_v3.4	18	24,254,085 - 24,254,292	UniSTS	RGSC3.4
Celera	18	23,219,409 - 23,219,616	UniSTS
RH 3.4 Map	18	284.2	UniSTS
Cytogenetic Map	18	p12	UniSTS

BE116335

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	23,765,565 - 23,765,757 (+)	Marker Load Pipeline
mRatBN7.2	18	23,491,142 - 23,491,334 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,643,755 - 24,643,946	NCBI	Rnor6.0
Rnor_5.0	18	24,360,953 - 24,361,144	UniSTS	Rnor5.0
RGSC_v3.4	18	24,278,339 - 24,278,530	UniSTS	RGSC3.4
Celera	18	23,243,645 - 23,243,836	UniSTS
RH 3.4 Map	18	301.3	UniSTS
Cytogenetic Map	18	p12	UniSTS

MARC_7291-7292:992008311:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,531,686 - 23,533,200 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	90,973,085 - 90,973,116 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,685,825 - 24,687,377	NCBI	Rnor6.0
Rnor_5.0	18	24,400,118 - 24,401,670	UniSTS	Rnor5.0
RGSC_v3.4	18	24,325,124 - 24,326,636	UniSTS	RGSC3.4
Celera	18	23,284,100 - 23,285,612	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017075 ⟹ ENSRNOP00000017075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,602 - 23,743,035 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,432,191 - 23,468,597 (+)	Ensembl
Rnor_6.0 Ensembl	18	24,584,900 - 24,689,636 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133811 ⟹ ENSRNOP00000112834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,694 - 23,809,708 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141009 ⟹ ENSRNOP00000100588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,602 - 23,747,648 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168101 ⟹ ENSRNOP00000102257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,694 - 23,809,708 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172505 ⟹ ENSRNOP00000110186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,602 - 23,741,111 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173447 ⟹ ENSRNOP00000110865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,706,692 - 23,809,683 (+)	Ensembl

RefSeq Acc Id:

NM_001107398 ⟹ NP_001100868

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,715 - 23,809,685 (+)	NCBI
mRatBN7.2	18	23,432,233 - 23,535,460 (+)	NCBI
Rnor_6.0	18	24,584,900 - 24,689,636 (+)	NCBI
Rnor_5.0	18	24,302,033 - 24,403,950 (+)	NCBI
RGSC_v3.4	18	24,219,464 - 24,328,893 (+)	RGD
Celera	18	23,184,843 - 23,287,871 (+)	NCBI

Sequence:

show sequence

GAAGATGGCGGCTGCATCTTTGAAGGAGAGGAATTGAGAGTGGGGAGAAGGGAAGAGGACCAGA
CGGGAGAGACATTCCCTACGGCGCCGAAGGACGCCGCGCTCGCGGTTAGGAGCTCTTCCCGGCC
CCCCACGTGACTTAGTAGGAAAACATCACCATGGCTACAGAAATTGGCTCTCCTCCACGATTTT
TCCATATGCCGAGGTTCCAGCACCAGGCTCCCCGACAGTTGTTCTATAAGCGGCCTGACTTTGC
ACAGCAGCAGGCAATGCAGCAGCTCACCTTTGACGGGAAGCGGATGAGAAAGGCCGTGAACCGG
AAAACCATAGACTACAACCCCTCTGTCATTAAGTATTTGGAGAATAGGATATGGCAAAGAGATC
AGAGAGATATGCGGGCAATTCAGCCGGATGCAGGTTATTATAATGATCTGGTCCCACCTATAGG
AATGTTGAATAATCCTATGAATGCAGTAACAACGAAATTTGTTAGGACATCAACAAACAAAGTA
AAATGCCCAGTGTTTGTTGTGAGGTGGACCCCGGAAGGAAGACGGTTGGTCACTGGAGCTTCTA
GTGGGGAGTTCACCTTGTGGAACGGGCTGACTTTCAACTTTGAAACCATATTGCAGGCTCATGA
TAGCCCTGTGAGGGCCATGACTTGGTCACATAATGACATGTGGATGTTGACAGCAGATCATGGA
GGATATGTGAAATATTGGCAATCCAACATGAACAACGTCAAGATGTTCCAGGCACATAAGGAGG
CGATTAGAGAGGCCAGTTTCTCACCCACGGATAATAAATTTGCTACATGCTCTGATGACGGCAC
TGTTAGAATCTGGGATTTTCTTCGTTGCCATGAGGAAAGAATTCTCCGAGGTCATGGTGCTGAT
GTGAAGTGTGTAGATTGGCATCCAACCAAAGGGTTGGTTGTTTCAGGAAGTAAAGATAGCCAGC
AGCCAATCAAGTTCTGGGACCCCAAGACTGGGCAGAGTCTTGCAACACTTCACGCCCATAAAAA
CACGGTGATGGAAGTGAAATTAAACCTCAACGGCAACTGGCTCCTCACGGCCTCTCGTGACCAT
CTCTGTAAGCTTTTCGATATCCGAAACCTGAAAGAAGAGCTTCAGGTATTCCGAGGTCACAAGA
AGGAAGCCACAGCTGTAGCCTGGCATCCTGTCCACGAAGGACTTTTTGCCAGCGGAGGATCCGA
CGGCTCCTTGTTATTCTGGCACGTTGGGGTGGAGAAGGAAGTAGGTGGGATGGAGATGGCCCAC
GAAGGGATGATCTGGAGTTTGGCTTGGCATCCTCTGGGACATATTCTCTGCTCGGGCTCAAATG
ACCATACCAGCAAATTCTGGACTCGAAATCGGCCAGGTGACAAAATGCGAGATCGATATAATCT
GAACCTTTTACCTGGCATGTCAGAAGACGGAGTAGAGTATGATGACCTGGAACCTAATAGCCTG
GCAGTGATTCCAGGGATGGGAATCCCAGAACAACTGAAACTGGCCATGGAGCAGGAGCAGATGG
GGAAAGATGAATCAAATGACATTGAAATGACAATTCCAGGCTTGGATTGGGGAATGGAAGAAGT
AATGCAAAAGGATCAGAAAAAAGTTCCTCAGAAGAAAGTCCCTTATGCAAAGCCCATTCCTGCT
CAGTTCCAGCAGGCCTGGATGCAAAATAAAGTTCCAATTCCTGCTCCAAATGAGGTGCTGAATG
ACAGGAAAGAGGATATTAAGCTAGAAGAGAAGAAAAAAACACAAGCAGAAATCGAGCAAGAAAT
GGCCACGCTGCAGTATACCAACCCACAGCTTTTAGAGCAACTTAAAATTGAAAGGCTTGCCCAG
AAGCAGGCCGATCAGATCCAGCCTCCTCCCTCGTCTGGTACTCCTCTCCTCGGACCTCAGCCCT
TTTCTGGTCAAGGCCCAATGTCTCAGATCCCTCAAGGTTTTCAGCAGCCTCACCCATCTCAGCA
GATGCCATTGGTGGCTCAAATGGGGCCTCCAGGTCCACAGGGCCAGTTCAGAGCCCCTGGACCC
CAGGGACAAATGGGACCACAAGGCCCTCCATTGCATCAAGGAGGTGGGGGGCCACAAGGATTCA
TGGGACCACAAGGACCCCAGGGCCCTCCCCAGGGTCTGCCACGGCCTCAGGACATGCATGGTCC
ACAAGGAATGCAGAGGCACCCTGGACCTCATGGCCCTTTGGGACCTCAAGGGCCACCCGGACCT
CAAGGTAGTTCTGGTCCTCAAGGTCATATGGGTCCTCAGGGTCCACCAGGACCTCAGGGTCACA
TTGGCCCCCAAGGCCCACCTGCTCCTCAGGGCCATATGGGCCCACAGGGTCCTCCTGGTACTCA
AGGAATGCAGGGACCACCTGGTCCCAGAGGAATGCAAGGACCTCCTCATCCTCATGGGATACAG
GGTGGGCCAACATCTCAAGGGATCCAGGGACCTCTGATGGGACTGAATCCAAGAGGAATGCAGG
GACCCCCAGGACCTCGGGAGAATCAGGGTCCTGCTCCTCAAGGGATAATGATTGGCCATCCACC
TCAGGAGATGAGAGGACCACATCCTCCAAGTGGACTGCTGGGACATGGCCCTCAGGAAATGAGA
GGTCCTCAGGAGATGCGGGGCATGCAGGGGCCTCCACCACAGGGGTCAATGTTGGGCCCTCCCC
AGGAACTTCGAGGACCCTCAGGTTCACAGGGGCAGCAGGGGCCACCCCAGGGCTCTTTGGGACC
TCCACCCCAGGGTGGCATGCAAGGACCCCCTGGACCTCAGGGACAACAGAACCCGGCAAGAGGG
CCACATCCATCTCAAGGGCCAATACCATTCCAGCAGCAGAAAGCACCTCTGCTAGGTGATGGGC
CCCGGGCCCCCTTCAATCAGGAAGGACAGAGTACAGGTCCCCCACCCTTGATACCAGGCCTAGG
GCAACAGGGAGCACAAGGCCGCATTCCTCCTCTGAACCCTGGACAAGGACCCGGCCCTAACAAA
GGTGACTCTCGAGGCCCTCCCAACCATCACCTGGGCCCCATGTCAGAGAGGCGGCATGAGCAGA
GCGGTGGTCCTGAGCATGGTCCTGACAGGGGACCTTTCCGGGGTGGCCAGGACTGCAGGGGTCC
TCCTGACAGGCGTGGCTCTCACCCTGATTTCCCTGATGACTTCAGCAGACCAGATGACTTCCAT
CCTGACAAGCGCTTTGGCCACCGGTTACGGGAATTCGAGGGACGAGGAGGACCCTTACCACAAG
AAGAAAAGTGGAGGCGAGGGGGCCCTGGACCTCCCTTTCCACCTGATCACAGGGAGTTCAATGA
GGGGGACGGCCGGGGTGCAGCCCGAGGCCCTCCAGGGGCATGGGAAGGCCGCAGACCTGGAGAC
GAACGATTCCCCCGGGATCCTGATGACCCACGATTTCGAGGGCGCAGAGAAGAAAGCTTTAGAA
GAGGTGCTCCCCCAAGACACGAAGGCCGTGCTCCTCCAAGAGGAAGGGACAACTTTCCTGGTCC
TGATGACTTTGGTCCAGAAGAGGTTTTCGATGCTTCTGATGAAGCAGCCCGAGGACGAGATCTC
AGAGGTCGAGGCCGTGGCACCCCTAGAGGGGGATCCAGGAAGTGCTTACTCCCCACTCCTGATG
AGTTTCCTCGCTTTGAAGGAGGACGGAAGCCAGACTCCTGGGATGGAAACCGAGAGCCCGGACC
AGGTCATGAACACTTTCGTGATGCTCCCCGTCCTGATCATCCCCCTCACGATGGCCATTCACCA
GCTAGCAGAGAGCGCTCCTCTTCTCTCCAAGGCATGGACATGGCCTCCCTACCACCCCGGAAGC
GCCCCTGGCATGATGGGTCGGGCACTTCTGAACACAGAGAGATGGAGGCCCAAGGAGGCCCCTC
GGAGGACCGAGGAAGCAAAGGCCGAGGGGGCCCAGGACCTTCCCAGAGAGTTCCAAAATCCGGG
CGTTCCAGCTCTTTGGACGGAGACCATCATGATGGATACCACAGAGATGAACCTTTTGGTGGCC
CTCCAGGCAGCAGCTCATCTTCTCGAGGGGGCCGGAGTGGCAGTAACTGGGGTAGAGGGAGTAA
CATGAACTCTGGCCCTCCAAGGAGAGGCACTTCAAGAGGTAGTGGGAGGGGTCGGTAGGAGGGC
CGAATCGCCTTAGGCCTCTCTGGATACTATTTAAGAAGTTCTTGTGGACTTACCACAGAAGCAA
AAACAAGCCTTTACCACTGTAGCCCTGAACAATTCTTCTGGGGCAGCTGAGTTCTATTCTAGGA
GCCCAGTGAGGTGCTCGAGACAAAAGACTGATGCCGACTCCCCAGGGAGTTGGCCGTTTTGTCT
TGTACCTCCTCATTGCTCTAAGTCTCCCGTTCGTTTGTGAAGAGAAAAGCTGGAATCCTTTTTT
TAAGTGTCATGAGAAATGGAGCACCTCCACAAAGTTCAGTTCATGTCCAATTGGAAATTTATTT
CTATATGTACAGTTTGTCAGAGAAAAAAACCTTGTTTTGTATGAA

hide sequence

RefSeq Acc Id:

XM_063277379 ⟹ XP_063133449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,812,985 (+)	NCBI

RefSeq Acc Id:

XM_063277380 ⟹ XP_063133450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,812,985 (+)	NCBI

RefSeq Acc Id:

XM_063277381 ⟹ XP_063133451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,812,985 (+)	NCBI

RefSeq Acc Id:

XM_063277382 ⟹ XP_063133452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,773,176 (+)	NCBI

RefSeq Acc Id:

XM_063277383 ⟹ XP_063133453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,757,455 (+)	NCBI

RefSeq Acc Id:

XM_063277384 ⟹ XP_063133454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,757,455 (+)	NCBI

RefSeq Acc Id:

XM_063277385 ⟹ XP_063133455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,706,708 - 23,749,177 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100868	(Get FASTA)	NCBI Sequence Viewer
	XP_063133449	(Get FASTA)	NCBI Sequence Viewer
	XP_063133450	(Get FASTA)	NCBI Sequence Viewer
	XP_063133451	(Get FASTA)	NCBI Sequence Viewer
	XP_063133452	(Get FASTA)	NCBI Sequence Viewer
	XP_063133453	(Get FASTA)	NCBI Sequence Viewer
	XP_063133454	(Get FASTA)	NCBI Sequence Viewer
	XP_063133455	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76176	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017075.6
	ENSRNOP00000100588
	ENSRNOP00000100588.1
	ENSRNOP00000102257.1
	ENSRNOP00000110186.1
	ENSRNOP00000110865
	ENSRNOP00000110865.1
	ENSRNOP00000112834
	ENSRNOP00000112834.1

RefSeq Acc Id:

NP_001100868 ⟸ NM_001107398

- UniProtKB:

F1LT09 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVI
KYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWT
PEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNM
NNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTK
GLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNL
KEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWH
PLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPE
QLKLAMEQEQMGKDESNDIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNK
VPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQADQIQPPP
SSGTPLLGPQPFSGQGPMSQIPQGFQQPHPSQQMPLVAQMGPPGPQGQFRAPGPQGQMGPQGPP
LHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHM
GPQGPPGPQGHIGPQGPPAPQGHMGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPTSQGIQG
PLMGLNPRGMQGPPGPRENQGPAPQGIMIGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQG
PPPQGSMLGPPQELRGPSGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPF
QQQKAPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHH
LGPMSERRHEQSGGPEHGPDRGPFRGGQDCRGPPDRRGSHPDFPDDFSRPDDFHPDKRFGHRLR
EFEGRGGPLPQEEKWRRGGPGPPFPPDHREFNEGDGRGAARGPPGAWEGRRPGDERFPRDPDDP
RFRGRREESFRRGAPPRHEGRAPPRGRDNFPGPDDFGPEEVFDASDEAARGRDLRGRGRGTPRG
GSRKCLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRPDHPPHDGHSPASRERSSSLQ
GMDMASLPPRKRPWHDGSGTSEHREMEAQGGPSEDRGSKGRGGPGPSQRVPKSGRSSSLDGDHH
DGYHRDEPFGGPPGSSSSSRGGRSGSNWGRGSNMNSGPPRRGTSRGSGRGR

hide sequence

Ensembl Acc Id:

ENSRNOP00000017075 ⟸ ENSRNOT00000017075

RefSeq Acc Id:	XP_063133449 ⟸ XM_063277379
- Peptide Label:	isoform X1
- UniProtKB:	A6J2P4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133450 ⟸ XM_063277380
- Peptide Label:	isoform X2
- UniProtKB:	A6J2P4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133451 ⟸ XM_063277381
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063133452 ⟸ XM_063277382
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063133454 ⟸ XM_063277384
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063133453 ⟸ XM_063277383
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063133455 ⟸ XM_063277385
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000110186 ⟸ ENSRNOT00000172505

Ensembl Acc Id:

ENSRNOP00000110865 ⟸ ENSRNOT00000173447

Ensembl Acc Id:

ENSRNOP00000102257 ⟸ ENSRNOT00000168101

Ensembl Acc Id:

ENSRNOP00000100588 ⟸ ENSRNOT00000141009

Ensembl Acc Id:

ENSRNOP00000112834 ⟸ ENSRNOT00000133811

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LT09-F1-model_v2	AlphaFold	F1LT09	1-1331	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700676

Promoter ID:

EPDNEW_R11200

Type:

multiple initiation site

Name:

Wdr33_1

Description:

WD repeat domain 33

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,584,880 - 24,584,940	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309230	AgrOrtholog
BioCyc Gene	G2FUF-8052	BioCyc
Ensembl Genes	ENSRNOG00000011382	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017075.7	UniProtKB/TrEMBL
	ENSRNOT00000133811	ENTREZGENE
	ENSRNOT00000133811.1	UniProtKB/TrEMBL
	ENSRNOT00000141009	ENTREZGENE
	ENSRNOT00000141009.1	UniProtKB/TrEMBL
	ENSRNOT00000168101.1	UniProtKB/TrEMBL
	ENSRNOT00000172505.1	UniProtKB/TrEMBL
	ENSRNOT00000173447	ENTREZGENE
	ENSRNOT00000173447.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Pfs2-like	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	307524	ENTREZGENE
PANTHER	PRE-MRNA 3' END PROCESSING PROTEIN WDR33	UniProtKB/TrEMBL
	PTHR22836	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Wdr33	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011382	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0ABK0LCR4_RAT	UniProtKB/TrEMBL
	A0ABK0LLF2_RAT	UniProtKB/TrEMBL
	A0ABK0LXM0_RAT	UniProtKB/TrEMBL
	A0ABK0M1Z4_RAT	UniProtKB/TrEMBL
	A0ABK0M9S0_RAT	UniProtKB/TrEMBL
	A6J2P4	ENTREZGENE, UniProtKB/TrEMBL
	F1LT09	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Wdr33	WD repeat domain 33	Wdr33_predicted	WD repeat domain 33 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Wdr33_predicted	WD repeat domain 33 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations