Grtp1 (growth hormone regulated TBC protein 1) - Rat Genome Database

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Gene: Grtp1 (growth hormone regulated TBC protein 1) Rattus norvegicus
Analyze
Symbol: Grtp1
Name: growth hormone regulated TBC protein 1
RGD ID: 1309210
Description: Predicted to enable GTPase activator activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GH regulated TBC protein 1; growth hormone-regulated TBC protein 1; LOC361179; LOC361180; LRRGT00052; MGC116122; similar to putative protein family member (XC177)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,034,931 - 83,056,589 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21676,332,777 - 76,356,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,283,103 - 76,354,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,613,380 - 81,635,002 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,065,957 - 85,087,579 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,314,662 - 80,336,321 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,665,533 - 81,689,525 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,665,540 - 81,688,148 (+)Ensemblrn6Rnor6.0
Rnor_5.01681,153,629 - 81,174,084 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41681,190,323 - 81,211,432 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1674,139,452 - 74,160,806 (+)NCBICelera
RGSC_v3.11681,185,066 - 81,211,507 (+)NCBI
Cytogenetic Map16q12.5NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090  


Genomics

Comparative Map Data
Grtp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,034,931 - 83,056,589 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21676,332,777 - 76,356,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,283,103 - 76,354,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,613,380 - 81,635,002 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,065,957 - 85,087,579 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,314,662 - 80,336,321 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,665,533 - 81,689,525 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,665,540 - 81,688,148 (+)Ensemblrn6Rnor6.0
Rnor_5.01681,153,629 - 81,174,084 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41681,190,323 - 81,211,432 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1674,139,452 - 74,160,806 (+)NCBICelera
RGSC_v3.11681,185,066 - 81,211,507 (+)NCBI
Cytogenetic Map16q12.5NCBI
GRTP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,324,163 - 113,364,148 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,324,163 - 113,364,158 (-)Ensemblhg38GRCh38
GRCh3713113,978,478 - 114,018,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,026,506 - 113,066,464 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3413113,027,160 - 113,057,718NCBI
Celera1394,805,016 - 94,846,427 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,417,142 - 94,447,381 (-)NCBIHuRef
CHM1_113113,947,496 - 113,986,324 (-)NCBICHM1_1
T2T-CHM13v2.013112,577,719 - 112,618,348 (-)NCBIT2T-CHM13v2.0
Grtp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,226,869 - 13,250,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,222,022 - 13,250,620 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38813,176,869 - 13,200,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,172,022 - 13,200,620 (-)Ensemblmm10GRCm38
MGSCv37813,176,869 - 13,200,624 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36813,176,846 - 13,200,601 (-)NCBIMGSCv36mm8
Celera813,345,188 - 13,368,837 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Grtp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404532,759 - 555,788 (+)Ensembl
ChiLan1.0NW_004955404532,866 - 555,366 (+)NCBIChiLan1.0ChiLan1.0
GRTP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214114,827,158 - 114,867,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,516,313 - 113,556,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,464,835 - 94,504,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,530,943 - 113,561,023 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,530,950 - 113,561,023 (-)EnsemblpanPan2panpan1.1
GRTP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,696,768 - 60,713,242 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,696,768 - 60,713,632 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2260,408,791 - 60,425,228 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02261,381,999 - 61,398,409 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,382,002 - 61,398,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,820,828 - 60,837,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,823,014 - 60,839,457 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,854,101 - 60,870,547 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Grtp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,575,797 - 195,599,644 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472352,463 - 376,382 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936472352,515 - 376,358 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRTP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,618,713 - 78,637,478 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11178,618,720 - 78,637,502 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,410,926 - 86,425,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRTP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,320,711 - 91,375,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,321,010 - 91,356,250 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604648,368,382 - 48,414,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grtp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793640,017 - 659,939 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624793640,063 - 660,002 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Grtp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11370,493,675 - 70,514,789 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Grtp1
155 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:131
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000026392, ENSRNOT00000026546, ENSRNOT00000057740, ENSRNOT00000073240
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat

Markers in Region
RH131356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21676,352,878 - 76,353,082 (+)MAPPERmRatBN7.2
Rnor_6.01681,686,233 - 81,686,436NCBIRnor6.0
Rnor_5.01681,172,472 - 81,172,675UniSTSRnor5.0
RGSC_v3.41681,209,819 - 81,210,022UniSTSRGSC3.4
Celera1674,159,193 - 74,159,396UniSTS
RH 3.4 Map16743.1UniSTS
Cytogenetic Map16q12.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 56 143 64 60 48 65 48 6 274 143 11 130 70 81 12 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026546   ⟹   ENSRNOP00000026546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1681,665,540 - 81,688,148 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000073240   ⟹   ENSRNOP00000065337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1681,665,582 - 81,687,794 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1681,679,280 - 81,685,239 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092644   ⟹   ENSRNOP00000075823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1681,665,552 - 81,685,174 (+)Ensembl
RefSeq Acc Id: NM_001031813   ⟹   NP_001026983
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,034,966 - 83,056,589 (+)NCBI
mRatBN7.21676,332,815 - 76,354,440 (+)NCBI
Rnor_6.01681,665,536 - 81,687,794 (+)NCBI
Rnor_5.01681,153,629 - 81,174,084 (+)NCBI
RGSC_v3.41681,190,323 - 81,211,432 (+)RGD
Celera1674,139,455 - 74,160,754 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001170477   ⟹   NP_001163948
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,034,966 - 83,056,589 (+)NCBI
mRatBN7.21676,332,815 - 76,354,440 (+)NCBI
Rnor_6.01681,665,533 - 81,687,845 (+)NCBI
Rnor_5.01681,153,629 - 81,174,084 (+)NCBI
RGSC_v3.41681,190,323 - 81,211,432 (+)RGD
Celera1674,139,452 - 74,160,806 (+)RGD
Sequence:
RefSeq Acc Id: XM_039094683   ⟹   XP_038950611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,034,931 - 83,056,589 (+)NCBI
mRatBN7.21676,332,777 - 76,356,414 (+)NCBI
RefSeq Acc Id: XM_063275574   ⟹   XP_063131644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,045,475 - 83,056,589 (+)NCBI
RefSeq Acc Id: NP_001163948   ⟸   NM_001170477
- Peptide Label: isoform 1
- UniProtKB: D4A2E4 (UniProtKB/TrEMBL),   A6IWJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001026983   ⟸   NM_001031813
- Peptide Label: isoform 2
- UniProtKB: Q4QQU7 (UniProtKB/Swiss-Prot),   A0A8L2QWJ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075823   ⟸   ENSRNOT00000092644
Ensembl Acc Id: ENSRNOP00000065337   ⟸   ENSRNOT00000073240
Ensembl Acc Id: ENSRNOP00000026546   ⟸   ENSRNOT00000026546
RefSeq Acc Id: XP_038950611   ⟸   XM_039094683
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063131644   ⟸   XM_063275574
- Peptide Label: isoform X2
Protein Domains
Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQU7-F1-model_v2 AlphaFold Q4QQU7 1-289 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700231
Promoter ID:EPDNEW_R10755
Type:initiation region
Name:Grtp1_1
Description:growth hormone regulated TBC protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01681,665,523 - 81,665,583EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309210 AgrOrtholog
BioCyc Gene G2FUF-10703 BioCyc
Ensembl Genes ENSRNOG00000019504 Ensembl
  ENSRNOG00000061995 Ensembl
  ENSRNOG00000071336 ENTREZGENE
Ensembl Transcript ENSRNOT00000026546 ENTREZGENE
  ENSRNOT00000073240 ENTREZGENE
  ENSRNOT00000134093 ENTREZGENE
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/Swiss-Prot
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/Swiss-Prot
InterPro Rab-GTPase-TBC_dom UniProtKB/Swiss-Prot
  Rab-GTPase_TBC_sf UniProtKB/Swiss-Prot
  Rab_GAP_TBC_domain UniProtKB/Swiss-Prot
KEGG Report rno:361180 UniProtKB/Swiss-Prot
NCBI Gene 361180 ENTREZGENE
PANTHER GROWTH HORMONE-REGULATED TBC PROTEIN 1 UniProtKB/Swiss-Prot
  RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/Swiss-Prot
Pfam RabGAP-TBC UniProtKB/Swiss-Prot
PhenoGen Grtp1 PhenoGen
PROSITE TBC_RABGAP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019504 RatGTEx
  ENSRNOG00000061995 RatGTEx
  ENSRNOG00000071336 RatGTEx
SMART TBC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47923 UniProtKB/Swiss-Prot
UniProt A0A8L2QWJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L5K2_RAT UniProtKB/TrEMBL
  A0ABK0LXV4_RAT UniProtKB/TrEMBL
  A6IWJ1 ENTREZGENE, UniProtKB/TrEMBL
  A6IWJ2_RAT UniProtKB/TrEMBL
  D4A2E4 ENTREZGENE, UniProtKB/TrEMBL
  GRTP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Grtp1  growth hormone regulated TBC protein 1  Grtp1  GH regulated TBC protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-04-05 Grtp1  GH regulated TBC protein 1  LOC361179  similar to putative protein family member (XC177)  Data merged from RGD:1549743 737654 APPROVED
2005-12-06 Grtp1  GH regulated TBC protein 1  Grtp1_predicted  GH regulated TBC protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-09-15 LOC361179  similar to putative protein family member (XC177)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Grtp1_predicted  GH regulated TBC protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED