Dlk2 (delta like non-canonical Notch ligand 2) - Rat Genome Database

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Gene: Dlk2 (delta like non-canonical Notch ligand 2) Rattus norvegicus
Analyze
Symbol: Dlk2
Name: delta like non-canonical Notch ligand 2
RGD ID: 1309143
Description: Predicted to enable Notch binding activity and identical protein binding activity. Predicted to be involved in regulation of fat cell differentiation. Predicted to act upstream of or within negative regulation of Notch signaling pathway. Predicted to be located in membrane. Orthologous to human DLK2 (delta like non-canonical Notch ligand 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: delta-like 2 homolog; delta-like 2 homolog (Drosophila); DLK-2; EGF-like protein 9; EGF-like-domain, multiple 9; Egfl9; endothelial cell-specific protein S-1; epidermal growth factor-like protein 9; LOC316232; protein delta homolog 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,174,667 - 22,179,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl922,173,158 - 22,179,149 (-)EnsemblGRCr8
mRatBN7.2914,677,102 - 14,681,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,676,562 - 14,681,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx923,261,278 - 23,265,744 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,325,037 - 28,329,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,624,663 - 26,629,129 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,061,187 - 17,065,600 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,061,190 - 17,065,600 (-)Ensemblrn6Rnor6.0
Rnor_5.0915,957,864 - 15,962,277 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,239,661 - 10,244,071 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,424,419 - 12,428,829 (-)NCBICelera
RGSC_v3.1910,236,979 - 10,247,497 (-)NCBI
Cytogenetic Map9q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17320102   PMID:21419176   PMID:23376485   PMID:25093684  


Genomics

Comparative Map Data
Dlk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,174,667 - 22,179,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl922,173,158 - 22,179,149 (-)EnsemblGRCr8
mRatBN7.2914,677,102 - 14,681,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,676,562 - 14,681,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx923,261,278 - 23,265,744 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,325,037 - 28,329,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,624,663 - 26,629,129 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,061,187 - 17,065,600 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,061,190 - 17,065,600 (-)Ensemblrn6Rnor6.0
Rnor_5.0915,957,864 - 15,962,277 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,239,661 - 10,244,071 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,424,419 - 12,428,829 (-)NCBICelera
RGSC_v3.1910,236,979 - 10,247,497 (-)NCBI
Cytogenetic Map9q12NCBI
DLK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,450,352 - 43,456,632 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,450,351 - 43,456,632 (-)Ensemblhg38GRCh38
GRCh37643,418,090 - 43,424,370 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,526,068 - 43,531,764 (-)NCBIBuild 36Build 36hg18NCBI36
Celera644,969,675 - 44,975,371 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,136,572 - 43,142,259 (-)NCBIHuRef
CHM1_1643,421,234 - 43,426,926 (-)NCBICHM1_1
T2T-CHM13v2.0643,279,119 - 43,285,399 (-)NCBIT2T-CHM13v2.0
Dlk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,608,342 - 46,614,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,608,347 - 46,614,197 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381746,297,256 - 46,303,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,297,421 - 46,303,271 (+)Ensemblmm10GRCm38
MGSCv371746,434,370 - 46,440,220 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361745,760,792 - 45,766,612 (+)NCBIMGSCv36mm8
Celera1749,730,873 - 49,737,865 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Dlk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,297,557 - 9,302,996 (-)Ensembl
ChiLan1.0NW_0049554379,297,557 - 9,302,581 (-)NCBIChiLan1.0ChiLan1.0
DLK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,950,499 - 57,956,792 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,820,314 - 53,828,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,042,368 - 43,048,661 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,333,540 - 44,339,963 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,333,540 - 44,339,963 (-)EnsemblpanPan2panpan1.1
DLK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,919,718 - 11,924,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,919,743 - 11,924,656 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1211,945,667 - 11,950,735 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01212,403,023 - 12,408,091 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,403,026 - 12,407,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,928,459 - 11,933,515 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,015,566 - 12,020,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,108,821 - 12,113,884 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dlk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,415,417 - 47,419,672 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,540,853 - 16,546,499 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,540,926 - 16,544,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,452,618 - 38,457,603 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1738,452,617 - 38,457,632 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,034,734 - 44,040,099 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DLK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,698,592 - 28,705,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604443,512,507 - 43,518,083 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,172,524 - 16,177,754 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475416,173,269 - 16,177,847 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dlk2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1483,563,261 - 83,567,981 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dlk2
41 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:34
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000025638
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat

Markers in Region
AI413481  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,677,215 - 14,677,302 (+)MAPPERmRatBN7.2
Rnor_6.0917,061,301 - 17,061,387NCBIRnor6.0
Rnor_5.0915,957,978 - 15,958,064UniSTSRnor5.0
RGSC_v3.4910,239,772 - 10,239,858UniSTSRGSC3.4
Celera912,424,530 - 12,424,616UniSTS
Cytogenetic Map9q12UniSTS
RH133766  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,677,338 - 14,677,518 (+)MAPPERmRatBN7.2
Rnor_6.0917,061,424 - 17,061,603NCBIRnor6.0
Rnor_5.0915,958,101 - 15,958,280UniSTSRnor5.0
RGSC_v3.4910,239,895 - 10,240,074UniSTSRGSC3.4
Celera912,424,653 - 12,424,832UniSTS
Cytogenetic Map9q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
8 1 34 135 34 35 11 53 11 6 190 107 7 121 64 84 24 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000025638   ⟹   ENSRNOP00000025638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,677,102 - 14,681,594 (-)Ensembl
Rnor_6.0 Ensembl917,061,190 - 17,065,600 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100894   ⟹   ENSRNOP00000095228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,677,102 - 14,681,443 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105020   ⟹   ENSRNOP00000093568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl922,173,158 - 22,179,149 (-)Ensembl
mRatBN7.2 Ensembl914,676,562 - 14,681,594 (-)Ensembl
RefSeq Acc Id: NM_001108202   ⟹   NP_001101672
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,174,667 - 22,179,149 (-)NCBI
mRatBN7.2914,677,102 - 14,681,584 (-)NCBI
Rnor_6.0917,061,190 - 17,065,600 (-)NCBI
Rnor_5.0915,957,864 - 15,962,277 (-)NCBI
RGSC_v3.4910,239,661 - 10,244,071 (-)RGD
Celera912,424,419 - 12,428,829 (-)RGD
Sequence:
RefSeq Acc Id: XM_063267095   ⟹   XP_063123165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,174,667 - 22,179,041 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101672 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123165 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZUK3 (Get FASTA)   NCBI Sequence Viewer  
  EDM18816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025638.3
  ENSRNOP00000093568
RefSeq Acc Id: NP_001101672   ⟸   NM_001108202
- Peptide Label: precursor
- UniProtKB: D3ZUK3 (UniProtKB/Swiss-Prot),   A0A8I6AJ13 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025638   ⟸   ENSRNOT00000025638
Ensembl Acc Id: ENSRNOP00000095228   ⟸   ENSRNOT00000100894
Ensembl Acc Id: ENSRNOP00000093568   ⟸   ENSRNOT00000105020
RefSeq Acc Id: XP_063123165   ⟸   XM_063267095
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AT37 (UniProtKB/TrEMBL),   A0A8I6AJ13 (UniProtKB/TrEMBL)
Protein Domains
EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUK3-F1-model_v2 AlphaFold D3ZUK3 1-382 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309143 AgrOrtholog
BioCyc Gene G2FUF-28216 BioCyc
Ensembl Genes ENSRNOG00000018949 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025638.5 UniProtKB/Swiss-Prot
  ENSRNOT00000105020 ENTREZGENE
Gene3D-CATH Laminin UniProtKB/Swiss-Prot
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_CS UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  Notch_Cell-Fate_Det UniProtKB/Swiss-Prot
KEGG Report rno:316232 UniProtKB/Swiss-Prot
NCBI Gene 316232 ENTREZGENE
PANTHER CRUMBS FAMILY MEMBER UniProtKB/Swiss-Prot
  DELTA-LIKE PROTEIN UniProtKB/Swiss-Prot
Pfam DL-JAG_EGF-like UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  hEGF UniProtKB/Swiss-Prot
PhenoGen Dlk2 PhenoGen
PRINTS EGFBLOOD UniProtKB/Swiss-Prot
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018949 RatGTEx
SMART EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
UniProt A0A8I6AJ13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT37 ENTREZGENE
  B5DFJ5_RAT UniProtKB/TrEMBL
  D3ZUK3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-20 Dlk2  delta like non-canonical Notch ligand 2  Dlk2  delta-like 2 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Dlk2  delta-like 2 homolog (Drosophila)  Egfl9_predicted  EGF-like-domain, multiple 9 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Egfl9_predicted  EGF-like-domain, multiple 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED