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Gene: Cox20 (cytochrome c oxidase assembly factor COX20) Rattus norvegicus

Analyze

Symbol:

Cox20 (Ensembl: LOC120096563)

Name:

cytochrome c oxidase assembly factor COX20 (Ensembl:cytochrome c oxidase assembly protein COX20, mitochondrial-like)

RGD ID:

1309105

Description:

Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex IV deficiency nuclear type 11. Orthologous to human COX20 (cytochrome c oxidase assembly factor COX20); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

COX20 Cox2 chaperone homolog; COX20 Cox2 chaperone homolog (S. cerevisiae); COX20 cytochrome C oxidase assembly factor; Fam36a; family with sequence similarity 36, member A; hypothetical protein LOC289278; LOC289278; RGD1309105; similar to RIKEN cDNA 2310005N03 gene; uncharacterized protein LOC289278

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,592,260 - 92,604,129 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	6,872,315 - 6,872,638 (-)	Ensembl				GRCr8
mRatBN7.2	13	90,065,900 - 90,075,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	6,567,733 - 6,568,056 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,573,162 - 92,577,332 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,973,304 - 93,977,474 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,154,900 - 91,159,068 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,219,853 - 96,224,023 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,219,853 - 96,224,023 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,660,978 - 100,665,148 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,969,033 - 93,973,203 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,626,715 - 89,630,882 (+)	NCBI		Celera
RGSC_v3.1	13	94,157,910 - 94,162,394 (+)	NCBI
Cytogenetic Map	13	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cytochrome-c oxidase deficiency disease (ISO)

genetic disease (ISO)

mitochondrial complex IV deficiency nuclear type 1 (ISO)

mitochondrial complex IV deficiency nuclear type 11 (ISO)

mitochondrial metabolism disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP,ISO)

bisphenol F (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

diquat (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fluoranthene (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

quercetin (ISO)

silver atom (ISO)

silver(0) (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial respiratory chain complex IV assembly (IBA,IEA,ISO)

Cellular Component

mitochondrial inner membrane (IEA,ISO)

mitochondrion (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18614015	PMID:23125284	PMID:24403053

Genomics

Comparative Map Data

Cox20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,592,260 - 92,604,129 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	6,872,315 - 6,872,638 (-)	Ensembl				GRCr8
mRatBN7.2	13	90,065,900 - 90,075,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	6,567,733 - 6,568,056 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,573,162 - 92,577,332 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,973,304 - 93,977,474 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,154,900 - 91,159,068 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,219,853 - 96,224,023 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,219,853 - 96,224,023 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,660,978 - 100,665,148 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,969,033 - 93,973,203 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,626,715 - 89,630,882 (+)	NCBI		Celera
RGSC_v3.1	13	94,157,910 - 94,162,394 (+)	NCBI
Cytogenetic Map	13	q25	NCBI

COX20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	244,835,306 - 244,845,063 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	244,835,616 - 244,845,480 (+)	Ensembl			hg38	GRCh38
GRCh37	1	244,998,608 - 245,008,365 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	243,065,262 - 243,074,982 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	241,325,003 - 241,332,998	NCBI
Celera	1	218,288,590 - 218,298,310 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	215,381,801 - 215,391,521 (+)	NCBI		HuRef
CHM1_1	1	246,270,981 - 246,280,707 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	244,251,611 - 244,261,368 (+)	NCBI		T2T-CHM13v2.0

Cox20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,146,379 - 178,150,258 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	178,146,695 - 178,150,258 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	178,318,095 - 178,322,693 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,319,130 - 178,322,693 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	180,249,284 - 180,252,824 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	180,155,828 - 180,159,368 (+)	NCBI		MGSCv36	mm8
Celera	1	185,378,778 - 185,382,318 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	83.16	NCBI

LOC102016346
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955406	7,994,226 - 8,002,639 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100992118
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	4,308,553 - 4,318,158 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	4,533,005 - 4,540,869 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	220,432,447 - 220,440,416 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	225,812,621 - 225,820,925 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,812,621 - 225,820,925 (+)	Ensembl			panPan2	panpan1.1

COX20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	35,819,647 - 35,823,983 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	35,821,040 - 35,823,862 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	35,290,661 - 35,297,709 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	35,646,109 - 35,653,119 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	35,560,904 - 35,653,119 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	35,481,577 - 35,488,625 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	35,496,612 - 35,503,662 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	35,762,159 - 35,769,209 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101957904
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	48,649,580 - 48,716,259 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	6,031,038 - 6,032,022 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	6,031,038 - 6,063,842 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COX20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,471,908 - 17,477,392 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	17,471,837 - 17,477,394 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	19,937,274 - 19,942,798 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COX20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,861,673 - 81,869,597 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	81,862,035 - 81,869,506 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	84,086,038 - 84,096,523 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101726175
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	14,767,882 - 14,780,938 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

LOC116911330
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	56,665,183 - 56,670,974 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cox20
46 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	472
Count of miRNA genes:	235
Interacting mature miRNAs:	275
Transcripts:	ENSRNOT00000006154
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH129823

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	90,070,191 - 90,070,346 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,222,122 - 96,222,276	NCBI	Rnor6.0
Rnor_5.0	13	100,663,247 - 100,663,401	UniSTS	Rnor5.0
RGSC_v3.4	13	93,971,302 - 93,971,456	UniSTS	RGSC3.4
Celera	13	89,628,984 - 89,629,138	UniSTS
RH 3.4 Map	13	607.5	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH131715

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	92,601,187 - 92,601,553 (+)	Marker Load Pipeline
mRatBN7.2	13	90,069,151 - 90,069,517 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,221,082 - 96,221,447	NCBI	Rnor6.0
Rnor_5.0	13	100,662,207 - 100,662,572	UniSTS	Rnor5.0
RGSC_v3.4	13	93,970,262 - 93,970,627	UniSTS	RGSC3.4
Celera	13	89,627,944 - 89,628,309	UniSTS
RH 3.4 Map	13	609.1	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH132995

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	92,603,082 - 92,603,746 (+)	Marker Load Pipeline
mRatBN7.2	13	90,071,046 - 90,071,710 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,222,977 - 96,223,640	NCBI	Rnor6.0
Rnor_5.0	13	100,664,102 - 100,664,765	UniSTS	Rnor5.0
RGSC_v3.4	13	93,972,157 - 93,972,820	UniSTS	RGSC3.4
Celera	13	89,629,839 - 89,630,499	UniSTS
RH 3.4 Map	13	607.7	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006154 ⟹ ENSRNOP00000006154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	96,219,853 - 96,224,023 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000074231 ⟹ ENSRNOP00000081441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	6,872,315 - 6,872,638 (-)	Ensembl
mRatBN7.2 Ensembl	14	6,567,733 - 6,568,056 (-)	Ensembl

RefSeq Acc Id:

NM_001105976 ⟹ NP_001099446

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,599,959 - 92,604,129 (+)	NCBI
mRatBN7.2	13	90,067,923 - 90,072,093 (+)	NCBI
Rnor_6.0	13	96,219,853 - 96,224,023 (+)	NCBI
Rnor_5.0	13	100,660,978 - 100,665,148 (+)	NCBI
RGSC_v3.4	13	93,969,033 - 93,973,203 (+)	RGD
Celera	13	89,626,715 - 89,630,882 (+)	RGD

Sequence:

show sequence

CCGCCTGCGAGACAGGAACCGGTGGAGCTTCTCTAGGTTGTCTCCTCTTGTGTTCCATTCCTGA
TGGTCTGTTGCGGGGTTGGAAAAACAGTGTGGTTGGTTCCAAGGAACAAAAGAGGGGGCCACGG
CGGGCTTCGGGACGGCCCCAGGATCGCTCCCTAAGATGGCCGCCGCCGTGAGGGAGGGTGGGCG
GAGCCCGTACTGCTTCCGTCGCGGGCCTGGGCGGGGCGGTAGCGACTACTTGCACCCATGGCTG
CCGCCTCGGAGCCCCACGAGCCGGAGAAAAAGCCCTTCAAGCTCCTAGGTATTTTAGATGTTGA
GAACACTCCATGCGCTCGAGAATCTATACTGTATGGCTCACTAGGATCTATTGTGACTGGACTT
GGACATTTCTTGGTGACCAGCAGAATTAGAAGATCCTGTGATGTTGGAGTAGGAGGATTTATCC
TGGTGACTTTAGGATGCTGGTTCCACTGTAGGTATAATTTTGCTAAGCAGAGGATCCAGGAAAG
AATTGCCAGAGAAGGAATAAAAAACAAGATTTTATATGAAAGCACCCACCTTGATCCTGAAAGA
AAAACGAAGAGCAGTAACAGCAGCTGAGCGACTTCATCAGCTTTAAACCCACAACTATGCTTCC
TTGTGAATCAACCATAAATTAAACTCAAGTGTGTCAACTGTATTGTTACCTACATGAAATCCTT
TTGTTTACTGCCAGTAAGTTATGTCTGTCATGTATCACAGAACTGCCATGTCAAACACATGGGA
GTCAGGGTCCTGCTCTTCCTAAGGTGTCAGATTCATTATCTGTTCACAAAGTACATCAGATTGA
AGGAGAAATCACACCTGAGCAGGGATATGTATCTATTACTGGCCTAGGACTTTGTCTATTGAAG
CTTCAACAGGAAAGACTGTTAACGATGGACACTAAGAAGCCTTGCATCTGGTAGCCCTACTATT
TCATCCTTGATAAAGTTGAGTTTGTAGTAGGTCAATCAAGTATTTTAACAAGCTGTGGACAGTG
CACT

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RefSeq Acc Id:

XM_039090533 ⟹ XP_038946461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,592,260 - 92,603,783 (+)	NCBI
mRatBN7.2	13	90,065,900 - 90,075,386 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099446	(Get FASTA)	NCBI Sequence Viewer
	XP_038946461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94799	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000081441.1
	ENSRNOP00000100989
	ENSRNOP00000100989.1

RefSeq Acc Id:	NP_001099446 ⟸ NM_001105976
- UniProtKB:	A6JGE3 (UniProtKB/TrEMBL), A0A8I5ZSY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAASEPHEPEKKPFKLLGILDVENTPCARESILYGSLGSIVTGLGHFLVTSRIRRSCDVGVGG FILVTLGCWFHCRYNFAKQRIQERIAREGIKNKILYESTHLDPERKTKSSNSS hide sequence

Ensembl Acc Id:

ENSRNOP00000006154 ⟸ ENSRNOT00000006154

RefSeq Acc Id:	XP_038946461 ⟸ XM_039090533
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000081441 ⟸ ENSRNOT00000074231

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYU4-F1-model_v2	AlphaFold	D3ZYU4	1-117	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699049

Promoter ID:

EPDNEW_R9573

Type:

multiple initiation site

Name:

Cox20_1

Description:

COX20 cytochrome C oxidase assembly factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,220,092 - 96,220,152	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309105	AgrOrtholog
BioCyc Gene	G2FUF-17174	BioCyc
Ensembl Genes	ENSRNOG00000004553	Ensembl
	ENSRNOG00000050982	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000076247	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000074231.5	UniProtKB/TrEMBL
	ENSRNOT00000159881	ENTREZGENE
	ENSRNOT00000159881.1	UniProtKB/TrEMBL
InterPro	Cox20	UniProtKB/TrEMBL
KEGG Report	rno:289278	UniProtKB/TrEMBL
NCBI Gene	289278	ENTREZGENE
PANTHER	CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX20, MITOCHONDRIAL	UniProtKB/TrEMBL
	CYTOCHROME C OXIDASE PROTEIN 20	UniProtKB/TrEMBL
Pfam	Cox20	UniProtKB/TrEMBL
PhenoGen	Cox20	PhenoGen
PRINTS	PROTEINF36A	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004553	RatGTEx
	ENSRNOG00000050982	RatGTEx
	ENSRNOG00000076247	RatGTEx
UniProt	A0A8I5ZSY5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0KZQ7_RAT	UniProtKB/TrEMBL
	A6JGE3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-07-20	Cox20	cytochrome c oxidase assembly factor COX20	Cox20	COX20 cytochrome C oxidase assembly factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-06-05	Cox20	COX20 cytochrome C oxidase assembly factor	Cox20	COX20 Cox2 chaperone homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Cox20	COX20 Cox2 chaperone homolog (S. cerevisiae)	Fam36a	family with sequence similarity 36, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam36a	family with sequence similarity 36, member A	RGD1309105_predicted	similar to RIKEN cDNA 2310005N03 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	RGD1309105_predicted	similar to RIKEN cDNA 2310005N03 gene	Fam36a_predicted	family with sequence similarity 36, member A (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Fam36a_predicted	family with sequence similarity 36, member A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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