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Gene: Fibcd1 (fibrinogen C domain containing 1) Rattus norvegicus

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Symbol:

Fibcd1

Name:

fibrinogen C domain containing 1

RGD ID:

1309097

Description:

Predicted to enable chitin binding activity. Predicted to be located in membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human FIBCD1 (fibrinogen C domain containing 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

fibrinogen C domain containing 1-like 1; fibrinogen C domain-containing protein 1; fibrinogen C domain-containing protein 1-like; LOC100909722; LOC311861; RGD1309097; similar to Hypothetical protein FLJ14810

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FIBCD1 (fibrinogen C domain containing 1)	RGD	RGD
Mus musculus (house mouse):	Fibcd1 (fibrinogen C domain containing 1)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Fibcd1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FIBCD1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FIBCD1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fibcd1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FIBCD1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FIBCD1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fibcd1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fibcd1 (fibrinogen C domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FCN3 (ficolin 3)	HGNC	Treefam
Alliance orthologs ³
Homo sapiens (human):	FIBCD1 (fibrinogen C domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fibcd1 (fibrinogen C domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fibcd1 (fibrinogen C domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T15B7.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T15B7.1	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG30280	Alliance	DIOPT (OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG30281	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8642	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9500	Alliance	DIOPT (OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	fibcd1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fibcd1a	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	fibcd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,490,459 - 35,524,142 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,490,459 - 35,524,142 (-)	Ensembl				GRCr8
mRatBN7.2	3	15,092,682 - 15,126,371 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,092,681 - 15,126,399 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,166,159 - 18,199,885 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	26,751,162 - 26,784,888 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,998,520 - 25,032,198 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,365,866 - 9,399,578 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,366,053 - 9,396,450 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,357,857 - 15,391,567 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	10,916,777 - 10,950,489 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	9,840,400 - 9,874,215 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2-bromohexadecanoic acid (ISO)

3-nitropropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

diazinon (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

ethylparaben (ISO)

glyphosate (ISO)

kojic acid (ISO)

methoxychlor (EXP)

N-methyl-4-phenylpyridinium (EXP)

okadaic acid (ISO)

perfluorooctanoic acid (EXP)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

testosterone (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular matrix (IBA)

extracellular space (IBA)

membrane (IEA,ISO)

Molecular Function

chitin binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11907111	PMID:15804047	PMID:19710473	PMID:22851708

Genomics

Comparative Map Data

Fibcd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,490,459 - 35,524,142 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,490,459 - 35,524,142 (-)	Ensembl				GRCr8
mRatBN7.2	3	15,092,682 - 15,126,371 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,092,681 - 15,126,399 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,166,159 - 18,199,885 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	26,751,162 - 26,784,888 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,998,520 - 25,032,198 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,365,866 - 9,399,578 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,366,053 - 9,396,450 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,357,857 - 15,391,567 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	10,916,777 - 10,950,489 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	9,840,400 - 9,874,215 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

FIBCD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	130,902,440 - 130,940,709 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	130,900,194 - 130,941,232 (-)	Ensembl			hg38	GRCh38
GRCh37	9	133,777,827 - 133,814,634 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	132,767,722 - 132,804,058 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	130,807,454 - 130,843,791	NCBI
Celera	9	104,316,112 - 104,352,719 (-)	NCBI		Celera
Cytogenetic Map	9	q34.12	NCBI
HuRef	9	103,264,491 - 103,300,922 (-)	NCBI		HuRef
CHM1_1	9	133,926,437 - 133,963,067 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	143,107,312 - 143,145,777 (-)	NCBI		T2T-CHM13v2.0

Fibcd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	31,703,302 - 31,736,976 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	31,703,302 - 31,736,017 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	31,813,290 - 31,846,964 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	31,813,290 - 31,846,005 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	31,668,810 - 31,701,525 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	31,635,303 - 31,667,975 (-)	NCBI		MGSCv36	mm8
Celera	2	31,515,976 - 31,548,494 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.89	NCBI

Fibcd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	808,056 - 835,112 (-)	Ensembl
ChiLan1.0	NW_004955513	810,927 - 835,106 (-)	NCBI	ChiLan1.0	ChiLan1.0

FIBCD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	8,415,773 - 8,454,831 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	8,418,116 - 8,457,174 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	102,018,681 - 102,058,898 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	130,668,147 - 130,695,731 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	130,668,147 - 130,695,731 (-)	Ensembl			panPan2	panpan1.1

FIBCD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	53,073,859 - 53,106,266 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	53,073,027 - 53,103,937 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	52,274,049 - 52,306,397 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	53,974,471 - 54,006,794 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	53,974,468 - 54,006,797 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	52,752,132 - 52,784,400 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	53,072,651 - 53,104,939 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	53,165,569 - 53,197,888 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fibcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,061,694 - 198,093,425 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,830,219 - 17,862,057 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,830,895 - 17,861,952 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FIBCD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	270,918,251 - 270,956,347 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	270,919,793 - 270,956,753 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	304,844,633 - 304,879,260 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FIBCD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	7,205,830 - 7,246,315 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	7,206,456 - 7,242,528 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	8,224,261 - 8,262,521 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fibcd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	4,845,086 - 4,867,220 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	4,845,036 - 4,867,509 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fibcd1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	3,793,379 - 3,824,359 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fibcd1
239 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	530
Count of miRNA genes:	259
Interacting mature miRNAs:	325
Transcripts:	ENSRNOT00000012927, ENSRNOT00000073999
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

BE097502

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,092,680 - 15,092,875 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	10,032,011 - 10,032,205	NCBI	Rnor6.0
Rnor_6.0	3	9,399,384 - 9,399,578	NCBI	Rnor6.0
Rnor_5.0	3	15,391,373 - 15,391,567	UniSTS	Rnor5.0
Rnor_5.0	3	14,759,179 - 14,759,373	UniSTS	Rnor5.0
RGSC_v3.4	3	10,916,777 - 10,916,971	UniSTS	RGSC3.4
Celera	3	9,840,400 - 9,840,594	UniSTS
RH 3.4 Map	3	53.0	UniSTS
Cytogenetic Map	3	p12	UniSTS

BF403370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,110,277 - 15,110,367 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	10,014,525 - 10,014,614	NCBI	Rnor6.0
Rnor_6.0	3	9,381,896 - 9,381,985	NCBI	Rnor6.0
Rnor_5.0	3	15,373,887 - 15,373,976	UniSTS	Rnor5.0
Rnor_5.0	3	14,741,691 - 14,741,780	UniSTS	Rnor5.0
RGSC_v3.4	3	10,934,370 - 10,934,459	UniSTS	RGSC3.4
Celera	3	9,858,091 - 9,858,180	UniSTS
RH 3.4 Map	3	85.4	UniSTS
Cytogenetic Map	3	p12	UniSTS

UniSTS:234369

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,092,681 - 15,092,930 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	10,031,956 - 10,032,204	NCBI	Rnor6.0
Rnor_6.0	3	9,399,329 - 9,399,577	NCBI	Rnor6.0
Rnor_5.0	3	14,759,124 - 14,759,372	UniSTS	Rnor5.0
Rnor_5.0	3	15,391,318 - 15,391,566	UniSTS	Rnor5.0
RGSC_v3.4	3	10,916,778 - 10,917,026	UniSTS	RGSC3.4
Celera	3	9,840,401 - 9,840,649	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	1	10	98	5	7	4	11	4	89	24	3	96	53	61	3	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012927 ⟹ ENSRNOP00000012928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,490,459 - 35,524,142 (-)	Ensembl
mRatBN7.2 Ensembl	3	15,092,681 - 15,126,399 (-)	Ensembl
Rnor_6.0 Ensembl	3	9,998,458 - 10,031,530 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073999 ⟹ ENSRNOP00000066063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	9,366,053 - 9,396,450 (+)	Ensembl

RefSeq Acc Id:

NM_001107829 ⟹ NP_001101299

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,490,459 - 35,524,142 (-)	NCBI
mRatBN7.2	3	15,092,682 - 15,126,371 (-)	NCBI
Rnor_6.0	3	9,365,866 - 9,399,578 (+)	NCBI
Rnor_5.0	3	15,357,857 - 15,391,567 (+)	NCBI
RGSC_v3.4	3	10,916,777 - 10,950,489 (-)	RGD
Celera	3	9,840,400 - 9,874,215 (-)	RGD

Sequence:

show sequence

GAGGCTCGCGCCCGCGCTCCCAGCAATCACACGCGCTCACACGCAGCCTAGCTTGCGGCCGCCG
CTCCCGGGCCACCCCGGATCCCCGGCACCGAGGGGACCTCCTGCAAGTGCAACGCATCCTGTGC
ACCCCTCGCCTCCTTTGCGCTCGCCCTCGCCCCGCACCCCTTGCGGGTCCTGCAGGAAGATGGT
CCACGAGCGGTGGAAGACCGTGGGCGGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCG
CAGAGAGCAGGCTGCAGTTACATCCTGTGCACGGTGCTCCTGTCCCTTGCGGTGCTGCTGGCGG
TGGCTGTCACCGGCGCCGTTCTCTTCCTGAACCATGCCCATGCACCAGGCACAGCGCCTCCACC
CATCGTCAGCACTGGGGCTGCCGGGGCCAACAGTGCCCTGGTCACCGTGGAGAGGGCTGACAGT
TCCCACCTCAGTCTCCTCATCGACCCTCGCTGCCCTGACCTCACTGACAGCTTCGCCCGCCTGG
AGGGCATCCAGGCCTCCATACTTCGGACACTGAGTGAGCACCAGGCACAGCCGCGGCTGGATGG
TGCCCCCGAGCTGCTGGATGCACTGGCTGACCAGCTGCCCCGGCTGCTGGCCCGGGCCTCTGAG
CTGCAGGCTGAATGTGCTGGGCTGCGCAAAGGACACAGCCTCCTGGGCCAGGGCCTCAGCACCC
TGCAGAGTGAACAGGGTCGCCTCATTCAGCTTCTCTCCGAGAGTCAAGGTCACATGGCTCATCT
GGTGAACTCAGTCAGTGATGTCCTGGAGGCTCTGCAGAGGGAGCGGGGGCTAGGCCGGCCCCGA
GTCAAGGCTGACCTTCAGAGGGCACCTTCCAGGGGAGCCCGGCCTCGAGGCTGTGCAAACGGAT
CTCGGCCCCGGGACTGTCTGGATGTTCTCCTGAGTGGACAGCAGGATGATGGTGTCTACTCCGT
CTTCCCCACTCACTACCCAGCTGGCTTCCAGGTCTACTGCGACATGCGTACTGACGGCGGGGGC
TGGACGGTGTTTCAGCGCCGGGAGGATGGCTCTGTGAACTTTTTCAGAGGCTGGGAGGCTTACC
GGGAGGGCTTCGGCAAGCTTACAGGGGAGCACTGGCTGGGGCTCAAGCGGATCCACGCCCTGAC
CACGCAAGCAGCATATGAGCTTCACGTGGACCTAGAGGACTTTGACAATGGCACCGCCTATGCC
CACTACGGGAGCTTTGGTGTGGGCTTGTTCTCTGTGGACCCTGAGGAGGATGGGTACCCACTCA
CGGTGGCTGACTACTCTGGCACTGCAGGCGACTCCCTCCTGAAGCACAGTGGCATGAGATTTAC
CACCAAAGACCGGGACAGCGACCATTCAGAGAACAACTGTGCCGCCTTCTACCGAGGGGCCTGG
TGGTACCGCAACTGCCACACATCCAACCTCAATGGCCAGTACCTGCGGGGCCCACACGCCTCCT
ACGCCGACGGTGTCGAGTGGTCCTCTTGGACGGGATGGCAGTACTCACTCAAGTTCTCGGAGAT
GAAGATCCGGCCACTCCGTGAGGACCGCTAGACTGGCACGCTGCCCAGCGCTAGTGTCCTCTGG
TTATGTCTAGTCCACACACATCTCATCCCATGCCCACCCCATGCCCACTGCTTCGAGAATACGC
TCTGCTCACCTGTGCATGGCTGGCCTGCTCTTCGGTAGGGCTGGCCCAGGGCTGACCCTGAAAC
TCAGCTCCCTGAGCCAGTGACGCCCCTTCCCAACCAGGTCCCTGTGTATCAGGTAACATGATCG
TTTGTTTCTAACAGTGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCGGGCTTTGTCTG
CTGCATCCTGGTAGGGCAGCATCCCCCACTTTTCCTGGCTTTGCAAAACCATCCAGAGTAGGGG
GCAGAGAGCACTCCAGCCCCCTCCCTCCAGCAGATAAAAGTGGAAGAAGGTTCAGACCTCCTCG
CCTGCCTGACACCTGCCTGCCTGCCCTAGCTTCAATCCCCCAGGGCCTGGAGACCCTTCCTCTT
ATCAGAGGACCTTGAACAGCTGCCACAGCTCTCACTTGTGGCCAACTGAGCCGGGGCACAGCTG
CCTACAAAGCCCCAAGGCCAAGACCAGTCCCCTGGGCCACCCTTCCCCTGGGTTTCTGAAGAGC
TGGGGCGGGGGTTTCTATTCTCCTGGTTGCTTTCAAAGCTCATTTGCTTTCCCACCTCAAACAA
GGTCCACCTGCCCTCCTGCAGGGCAACCATGGGTCCTGCCTGTGGGGCAAGAGGGGTGGGGTGG
GACTGGCCTAAGCCAGTGAGAACCTCTTGGGGTGAGGCTGTGTCAGGCTCTTGTGTGGTGCCAA
CCTCTGTGGACTGACTCTAGGATCTTCTCAGAAGCCAGAGTTAGAGTCAGCCAGCCCTGGGACT
CAGCATGGCCCAAGACTGCAGAGAGGCTGCCCCCTGCTGGCCATCATGGACACTGCCATCAGGG
CCTAACGGGGCAGGGGACAAAGCATCAAGCAGGTTGGACGTCTGGACATTTCCTTGTCTAACCT
TCTCAACACCTGCACAGGTTATCCCCCAGGAAGGCAGGCTGCAGCCCCACCCTCAGCTACCTTC
TTGTCAGCTGAGACGCTCTTATGGAAACCTGACAGGGGCTTTTAAAGGACTGGGTGGTAAGATG
GCAATGGTGACCTCCAGTCAGGAGGCAGAGACCCACGCCTCTTCCTTCTGCCAGACTTGTGCCA
AAGCCTGAACCCCGCTGATGAACTGTGTGACCCGCTCAGTCCCTCACGTTGAGCCTCGGGTCTT
CAGCAAGGGTCTGTCGCACATCGGTTGGAGTCAAAGCCATCCTAGGTGCTAGACAAGGCTGGCT
ATTGCTTATATGTCCCAAGCTGATGGCAAGAAGCATGGGTAGAGTGGCCAAGGTTCTGATGGGA
CAAGGGATACACAGGGAAGTCCCCTCCCATTCCCTCTCTGTCCTCGACACCCGGCACCTAGCTT
CATTGCAGAGGTGGGTAGGAGCCTAAACACATCCCGGCAGACACCACCCACCCCCGAGGCTGCT
GCTGAAGTGGCTTCTGTTGCCAGCTGCCGCTTTGAGCGCTGCTCAGAAGTGCCGAGCGCTTTCT
GATGTGGTATCAAACAAACCCCTTCGAGTGAAGCAACAGATTCACACATGCGAGTGTGGGACAG
GAGAGCTTCCAGCCAGGACTGAGCTGCAAGGACTGCAGGAACTGAAGCTCATCCCACCAAGGCA
GCTGGTGGGCAGGTGAGGGGTGACAAGCATCCCTGTCTGCTCACATTGGAAATGACAGCCCTTT
CAGCCCAGCCACTGCCCCAGGGACACCAAGCCCTCTCCCAGGACAGGTTGGTACTCTAGGGGGT
GTGGTTCTGCCAAACACTGGCAGAATGGGCACAAGGTAGGGAAAAGTAGGGAGAGACCAGGTCA
ATAGTCCTTCACCTTCCTCATGTGCACCCTCCAAGGGCAGGTGGGAGCACTGTCCATGGGAGCA
CTGTCCCTGGGAGCACTGTCACAGCACACTGGGCCACAGCCTCCAGCCCTGGCTTGAGTTCACT
GGTCTGATGTCTGTGTAGATGGCTGCCAACCATAATCAGAGTAGCCACGGAAATCAGGAATGTT
TTTGGGGTGGGGGCAGGACAGGTGCATGGAGACATGATAATGTCAGCAGGCCGTGGGCCCTGAC
CCACCAGACCTACTTTGGTTTGGCAATGGATGACTAACCAGGGTGAGTCAGTGATGTCACCTGG
CAGTCACACTGCTTGCCTTCCTGGGCAGGGTCTCCACACCCCACACTAGGGTCTTAGCAGTGTG
GCTGTCTCTTTGCAAAGCATCAAAACTTCCTTCCAAGCCCTAGCTGGCTCTGTGGATTCCACCA
AAGGCCTCCCAGCTGGCTATACCTGGACAGCAATCCTGGGATGATGAGAGACCAGTTAGAGCCA
TGAGCCTCTCCGGTGGCATTAGTGGCTTGTGGGAGCGGCAGGACACTAGTGTTTGTTGTGGGAG
TGGCGTCGCCAGTTCCCGGTTCTTCCCTGCCCCCAAACCCGTGTCACCCCAAGCCTCCAGGTGG
AGGACAGGCATCTGTGGCCATGGTCACTGCAGGTCTTGGCTCCCAACAGCACTTCTGGAAGAGA
GCAGGCCCTCGAATGACCAGAAAGTCTCCGAGCAAGAGCGTGAGCCTCCAGCTTTGAATAAAAT
GACTTGACCCTGAGGCAGGAGACATGGATGAGCGAGGGGCAAGAGCTAGGCCCATGGCTGCCCT
GAACCCTGTGATCTGAGGAGGAACACGCCAGCAGAAGTCTCATGGAACCCAGGAGTGTGGTGAA
GCAACATGGACCCAAGCATCTGGAGGCCTCTCAGTGCCTCCGTCTGCCTTCGGTGAAGGTTGCC
CGAGGTTCTAAGGCTCAGCAACTGCAGGATCCATAAATCCAGAGGCCAGGGTCAGGCCGCTGTG
GAATTGGGGGTGAGGGAGGGGTCAGACCTGAGGCTTTGAGGAGCAGGGCAGGCGTGCATGCTGG
CAGATGCAATGGAACCCTGGGCTGGGGAGCGGCTCTGAGGGTCAGTGCAGCAGCCCACAGGCAA
ATAGTGTGGGTCGGTTGCTACTTGGGGCTTTGTGCACTCAGTGTCTTGTATTTCCCTGTCTTCA
ATAAAGTCTCGTGGTGACCCAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101299	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93265	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012928
	ENSRNOP00000012928.5

RefSeq Acc Id:

NP_001101299 ⟸ NM_001107829

- UniProtKB:

D4ADA1 (UniProtKB/TrEMBL), A6JU32 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVHERWKTVGGASQLEDRPRDKPQRAGCSYILCTVLLSLAVLLAVAVTGAVLFLNHAHAPGTAP
PPIVSTGAAGANSALVTVERADSSHLSLLIDPRCPDLTDSFARLEGIQASILRTLSEHQAQPRL
DGAPELLDALADQLPRLLARASELQAECAGLRKGHSLLGQGLSTLQSEQGRLIQLLSESQGHMA
HLVNSVSDVLEALQRERGLGRPRVKADLQRAPSRGARPRGCANGSRPRDCLDVLLSGQQDDGVY
SVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEAYREGFGKLTGEHWLGLKRIHA
LTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMR
FTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGPHASYADGVEWSSWTGWQYSLKFS
EMKIRPLREDR

hide sequence

Ensembl Acc Id:

ENSRNOP00000066063 ⟸ ENSRNOT00000073999

Ensembl Acc Id:

ENSRNOP00000012928 ⟸ ENSRNOT00000012927

Protein Domains

Fibrinogen C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADA1-F1-model_v2	AlphaFold	D4ADA1	1-459	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309097	AgrOrtholog
BioCyc Gene	G2FUF-50170	BioCyc
Ensembl Genes	ENSRNOG00000009735	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000050844	Ensembl
Ensembl Transcript	ENSRNOT00000012927	ENTREZGENE
	ENSRNOT00000012927.8	UniProtKB/TrEMBL
Gene3D-CATH	3.90.215.10	UniProtKB/TrEMBL
InterPro	Fibrinogen-like_C	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_1	UniProtKB/TrEMBL
	Fibrinogen_C-term_domain	UniProtKB/TrEMBL
	Fibrinogen_CS	UniProtKB/TrEMBL
KEGG Report	rno:311861	UniProtKB/TrEMBL
NCBI Gene	311861	ENTREZGENE
PANTHER	FIBRINOGEN C DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	UniProtKB/TrEMBL
Pfam	Fibrinogen_C	UniProtKB/TrEMBL
PhenoGen	Fibcd1	PhenoGen
PROSITE	FIBRINOGEN_C_1	UniProtKB/TrEMBL
	FIBRINOGEN_C_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009735	RatGTEx
	ENSRNOG00000050844	RatGTEx
SMART	FBG	UniProtKB/TrEMBL
Superfamily-SCOP	Fibrinogen_a/b/g_C	UniProtKB/TrEMBL
UniProt	A6JU32	ENTREZGENE, UniProtKB/TrEMBL
	D4ADA1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Fibcd1	fibrinogen C domain containing 1	LOC100909722	fibrinogen C domain-containing protein 1-like	Data merged from RGD:6501916	737654	PROVISIONAL
2012-07-05	LOC100909722	fibrinogen C domain-containing protein 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Fibcd1	fibrinogen C domain containing 1	Fibcd1_predicted	fibrinogen C domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Fibcd1_predicted	fibrinogen C domain containing 1 (predicted)	RGD1309097_predicted	similar to Hypothetical protein FLJ14810 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309097_predicted	similar to Hypothetical protein FLJ14810 (predicted)	LOC311861_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311861_predicted	similar to Hypothetical protein FLJ14810 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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