Tex30 (testis expressed 30) - Rat Genome Database

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Gene: Tex30 (testis expressed 30) Rattus norvegicus
Analyze
Symbol: Tex30
Name: testis expressed 30
RGD ID: 1309095
Description: Orthologous to human TEX30 (testis expressed 30); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC301381; LOC301381; RGD1309095; similar to hypothetical protein BC015148; testis-expressed protein 30; testis-expressed sequence 30 protein; uncharacterized protein LOC301381
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,735,512 - 53,744,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl953,735,512 - 53,741,042 (-)EnsemblGRCr8
mRatBN7.2946,243,416 - 46,252,273 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,242,748 - 46,252,249 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx954,758,886 - 54,767,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0959,881,686 - 59,890,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0958,161,923 - 58,170,758 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0950,858,737 - 50,868,238 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,858,737 - 50,868,238 (-)Ensemblrn6Rnor6.0
Rnor_5.0950,525,698 - 50,535,199 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4943,181,528 - 43,191,029 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera943,946,413 - 43,955,915 (-)NCBICelera
RGSC_v3.1943,183,612 - 43,192,413 (-)NCBI
Cytogenetic Map9q22NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tex30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,735,512 - 53,744,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl953,735,512 - 53,741,042 (-)EnsemblGRCr8
mRatBN7.2946,243,416 - 46,252,273 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,242,748 - 46,252,249 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx954,758,886 - 54,767,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0959,881,686 - 59,890,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0958,161,923 - 58,170,758 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0950,858,737 - 50,868,238 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,858,737 - 50,868,238 (-)Ensemblrn6Rnor6.0
Rnor_5.0950,525,698 - 50,535,199 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4943,181,528 - 43,191,029 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera943,946,413 - 43,955,915 (-)NCBICelera
RGSC_v3.1943,183,612 - 43,192,413 (-)NCBI
Cytogenetic Map9q22NCBI
TEX30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,765,888 - 102,773,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13102,765,888 - 102,773,811 (-)Ensemblhg38GRCh38
GRCh3713103,418,238 - 103,426,136 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,216,461 - 102,224,143 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1384,262,890 - 84,270,580 (-)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1384,010,751 - 84,018,441 (-)NCBIHuRef
CHM1_113103,387,894 - 103,395,585 (-)NCBICHM1_1
T2T-CHM13v2.013101,983,926 - 101,991,831 (-)NCBIT2T-CHM13v2.0
Tex30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,125,773 - 44,141,650 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,125,773 - 44,141,601 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38144,086,613 - 44,102,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,086,613 - 44,102,441 (-)Ensemblmm10GRCm38
MGSCv37144,143,462 - 44,159,233 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36144,031,159 - 44,046,987 (-)NCBIMGSCv36mm8
Celera144,429,497 - 44,445,910 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.54NCBI
Tex30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,390,625 - 8,396,625 (+)Ensembl
ChiLan1.0NW_0049554048,390,635 - 8,394,761 (+)NCBIChiLan1.0ChiLan1.0
TEX30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,285,004 - 104,293,018 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113102,951,910 - 102,960,960 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01383,927,705 - 83,936,447 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,063,419 - 103,071,173 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,063,419 - 103,071,173 (-)EnsemblpanPan2panpan1.1
TEX30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,260,841 - 52,267,711 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2252,260,841 - 52,267,664 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2252,040,515 - 52,047,389 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02252,708,502 - 52,715,376 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2252,703,038 - 52,716,057 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12252,361,094 - 52,367,974 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02252,377,152 - 52,384,032 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02252,418,347 - 52,425,228 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,653,316 - 187,658,785 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364728,294,400 - 8,300,967 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364728,294,024 - 8,298,834 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,077,728 - 71,084,646 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11171,077,717 - 71,085,063 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,369,208 - 78,376,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,327,487 - 81,336,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl381,327,986 - 81,331,592 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604637,864,514 - 37,873,157 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247938,721,762 - 8,728,505 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247938,721,772 - 8,728,298 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14120,153,104 - 120,161,943 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex30
69 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:376
Count of miRNA genes:212
Interacting mature miRNAs:245
Transcripts:ENSRNOT00000015600
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
RH135142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2946,243,771 - 46,244,968 (+)MAPPERmRatBN7.2
Rnor_6.0950,859,761 - 50,860,957NCBIRnor6.0
Rnor_5.0950,526,722 - 50,527,918UniSTSRnor5.0
RGSC_v3.4943,182,552 - 43,183,748UniSTSRGSC3.4
Celera943,947,437 - 43,948,633UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 90 59 6 354 190 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015600   ⟹   ENSRNOP00000015600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl946,242,748 - 46,252,249 (-)Ensembl
Rnor_6.0 Ensembl950,858,737 - 50,868,238 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106819   ⟹   ENSRNOP00000085625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl953,735,512 - 53,741,042 (-)Ensembl
mRatBN7.2 Ensembl946,243,416 - 46,252,214 (-)Ensembl
RefSeq Acc Id: NM_001395634   ⟹   NP_001382563
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,317 (-)NCBI
mRatBN7.2946,243,416 - 46,252,221 (-)NCBI
RefSeq Acc Id: XM_039083267   ⟹   XP_038939195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,246 (-)NCBI
RefSeq Acc Id: XM_039083269   ⟹   XP_038939197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,111 (-)NCBI
RefSeq Acc Id: XM_039083270   ⟹   XP_038939198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,193 (-)NCBI
RefSeq Acc Id: XM_039083271   ⟹   XP_038939199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,343 (-)NCBI
mRatBN7.2946,243,416 - 46,252,247 (-)NCBI
RefSeq Acc Id: XM_039083272   ⟹   XP_038939200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,251,372 (-)NCBI
RefSeq Acc Id: XM_039083273   ⟹   XP_038939201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,367 (-)NCBI
mRatBN7.2946,243,416 - 46,252,273 (-)NCBI
RefSeq Acc Id: XM_039083274   ⟹   XP_038939202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,743,749 (-)NCBI
mRatBN7.2946,243,416 - 46,251,379 (-)NCBI
RefSeq Acc Id: XM_039083275   ⟹   XP_038939203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,251,796 (-)NCBI
RefSeq Acc Id: XM_039083276   ⟹   XP_038939204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,108 (-)NCBI
RefSeq Acc Id: XM_039083277   ⟹   XP_038939205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,193 (-)NCBI
RefSeq Acc Id: XM_039083278   ⟹   XP_038939206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,111 (-)NCBI
RefSeq Acc Id: XM_039083279   ⟹   XP_038939207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,252,193 (-)NCBI
RefSeq Acc Id: XM_039083280   ⟹   XP_038939208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,340 (-)NCBI
mRatBN7.2946,243,416 - 46,252,247 (-)NCBI
RefSeq Acc Id: XM_039083281   ⟹   XP_038939209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,743,539 (-)NCBI
mRatBN7.2946,243,416 - 46,251,372 (-)NCBI
RefSeq Acc Id: XM_039083282   ⟹   XP_038939210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,341 (-)NCBI
mRatBN7.2946,243,416 - 46,252,242 (-)NCBI
RefSeq Acc Id: XM_039083284   ⟹   XP_038939212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,744,672 (-)NCBI
mRatBN7.2946,243,416 - 46,251,796 (-)NCBI
RefSeq Acc Id: XM_063266932   ⟹   XP_063123002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8953,735,512 - 53,743,531 (-)NCBI
Ensembl Acc Id: ENSRNOP00000015600   ⟸   ENSRNOT00000015600
RefSeq Acc Id: XP_038939201   ⟸   XM_039083273
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939208   ⟸   XM_039083280
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939199   ⟸   XM_039083271
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939195   ⟸   XM_039083267
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939210   ⟸   XM_039083282
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939205   ⟸   XM_039083277
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939207   ⟸   XM_039083279
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939198   ⟸   XM_039083270
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939206   ⟸   XM_039083278
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939197   ⟸   XM_039083269
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939204   ⟸   XM_039083276
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939212   ⟸   XM_039083284
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939203   ⟸   XM_039083275
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939202   ⟸   XM_039083274
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939209   ⟸   XM_039083281
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939200   ⟸   XM_039083272
- Peptide Label: isoform X1
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085625   ⟸   ENSRNOT00000106819
RefSeq Acc Id: NP_001382563   ⟸   NM_001395634
- UniProtKB: D3ZL12 (UniProtKB/TrEMBL),   A6INS1 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123002   ⟸   XM_063266932
- Peptide Label: isoform X1
- UniProtKB: A6INS1 (UniProtKB/TrEMBL),   D3ZL12 (UniProtKB/TrEMBL),   A0A8I5ZZM4 (UniProtKB/TrEMBL)
Protein Domains
KANL3/Tex30 alpha/beta hydrolase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZL12-F1-model_v2 AlphaFold D3ZL12 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696644
Promoter ID:EPDNEW_R7168
Type:multiple initiation site
Name:Tex30_1
Description:testis expressed 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0950,868,153 - 50,868,213EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309095 AgrOrtholog
BioCyc Gene G2FUF-27655 BioCyc
Ensembl Genes ENSRNOG00000011658 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106819 ENTREZGENE
  ENSRNOT00000106819.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  KANL3/Tex30_Abhydrolase UniProtKB/TrEMBL
  NSL3/Tex30 UniProtKB/TrEMBL
NCBI Gene 301381 ENTREZGENE
PANTHER PTHR13136 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 30 UniProtKB/TrEMBL
Pfam Abhydrolase_11 UniProtKB/TrEMBL
PhenoGen Tex30 PhenoGen
RatGTEx ENSRNOG00000011658 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8I5ZZM4 ENTREZGENE, UniProtKB/TrEMBL
  A6INS1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZL12 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Tex30  testis expressed 30  RGD1309095  similar to hypothetical protein BC015148  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309095  similar to hypothetical protein BC015148   RGD1309095_predicted  similar to hypothetical protein BC015148 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309095_predicted  similar to hypothetical protein BC015148 (predicted)  LOC301381_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC301381_predicted  similar to hypothetical protein BC015148 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL