Advanced Search (OLGA)

Gene: Slc35e2b (solute carrier family 35, member E2B) Rattus norvegicus

Analyze

Symbol:

Slc35e2b (Ensembl: Slc35e2)

Name:

solute carrier family 35, member E2B

RGD ID:

1309076

Description:

Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within blastocyst hatching. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to several human genes including SLC35E2B (solute carrier family 35 member E2B); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC313765; Slc35e2; solute carrier family 35 member E2; solute carrier family 35 member E2B; solute carrier family 35, member E2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35E2B (solute carrier family 35 member E2B)	HGNC	Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Slc35e2 (solute carrier family 35, member E2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35E2B (solute carrier family 35 member E2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35E2 (solute carrier family 35 member E2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35E2 (solute carrier family 35 member E2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35E2B (solute carrier family 35 member E2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC35E2A (solute carrier family 35 member E2A (pseudogene))	HGNC	PhylomeDB
Alliance orthologs ³
Homo sapiens (human):	SLC35E2A (solute carrier family 35 member E2A (pseudogene))	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Homo sapiens (human):	SLC35E2A (solute carrier family 35 member E2A (pseudogene))	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Mus musculus (house mouse):	Slc35e2 (solute carrier family 35, member E2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC35E2B (solute carrier family 35 member E2B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-236j9.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35e2b (solute carrier family 35 member E2B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SLY41	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YJL193W	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc35e2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc35e2b	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,465,222 - 171,493,317 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	171,475,386 - 171,493,315 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,185,166 - 166,211,055 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,185,166 - 166,207,021 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	168,890,156 - 168,912,046 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,711,570 - 170,733,462 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,674,112 - 170,696,001 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,024,335 - 173,050,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,024,335 - 173,046,194 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	176,499,465 - 176,521,588 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	172,431,714 - 172,453,709 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	164,386,773 - 164,408,383 (+)	NCBI		Celera
RGSC_v3.1	5	172,450,317 - 172,464,088 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

High Myopia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

fenthion (ISO)

folic acid (ISO)

gallic acid (ISO)

indometacin (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:27869233

Genomics

Comparative Map Data

Slc35e2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,465,222 - 171,493,317 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	171,475,386 - 171,493,315 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,185,166 - 166,211,055 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,185,166 - 166,207,021 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	168,890,156 - 168,912,046 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,711,570 - 170,733,462 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,674,112 - 170,696,001 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,024,335 - 173,050,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,024,335 - 173,046,194 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	176,499,465 - 176,521,588 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	172,431,714 - 172,453,709 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	164,386,773 - 164,408,383 (+)	NCBI		Celera
RGSC_v3.1	5	172,450,317 - 172,464,088 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

SLC35E2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,661,478 - 1,692,795 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,659,529 - 1,693,017 (-)	Ensembl			hg38	GRCh38
GRCh37	1	1,592,939 - 1,624,234 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,582,799 - 1,618,022 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	953,254 - 984,414 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	869,815 - 900,273 (-)	NCBI		HuRef
CHM1_1	1	1,579,995 - 1,611,162 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,095,940 - 1,127,231 (-)	NCBI		T2T-CHM13v2.0

Slc35e2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,685,873 - 155,707,797 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,685,873 - 155,707,797 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	155,601,416 - 155,623,340 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,601,416 - 155,623,340 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	154,975,525 - 154,997,449 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,445,216 - 154,467,140 (+)	NCBI		MGSCv36	mm8
Celera	4	157,876,331 - 157,898,350 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.62	NCBI

SLC35E2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,521,776 - 226,556,034 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,176,903 - 225,211,985 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	429,954 - 458,052 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,581,352 - 1,613,835 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,581,352 - 1,613,835 (-)	Ensembl			panPan2	panpan1.1

SLC35E2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,715,798 - 56,739,464 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,718,550 - 56,738,420 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,791,440 - 56,815,168 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,917,815 - 56,941,639 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,918,900 - 56,938,978 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,910,752 - 56,932,368 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,800,879 - 56,824,612 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,190,883 - 57,214,660 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SLC35E2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,820,812 - 63,835,561 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	63,820,804 - 63,842,400 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	58,250,371 - 58,261,580 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35E2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	129,808,281 - 129,843,006 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	129,824,956 - 129,846,114 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	34,261,891 - 34,301,029 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	42
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000023097
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat

Markers in Region

AI008692

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,197,864 - 166,198,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,037,034 - 173,037,226	NCBI	Rnor6.0
Rnor_5.0	5	176,512,164 - 176,512,356	UniSTS	Rnor5.0
RGSC_v3.4	5	172,444,414 - 172,444,606	UniSTS	RGSC3.4
Celera	5	164,399,226 - 164,399,418	UniSTS
RH 3.4 Map	5	1144.1	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	13	79	202	91	90	59	156	59	6	469	273	17	185	107	121	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023097 ⟹ ENSRNOP00000023097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,185,166 - 166,207,021 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,024,335 - 173,046,194 (+)	Ensembl

RefSeq Acc Id:

NM_001107998 ⟹ NP_001101468

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,467,428 - 171,489,283 (+)	NCBI
mRatBN7.2	5	166,185,166 - 166,207,021 (+)	NCBI
Rnor_6.0	5	173,024,335 - 173,046,194 (+)	NCBI
Rnor_5.0	5	176,499,465 - 176,521,588 (+)	NCBI
RGSC_v3.4	5	172,431,714 - 172,453,709 (+)	RGD
Celera	5	164,386,773 - 164,408,383 (+)	RGD

Sequence:

show sequence

ATTCGTAGGTTCGCCATTGAGCGCTTCGCGTACTCTGACTTTCTAGTCAGATTTTAGGCTCCTT
GAAACCAAACCCTGGTTTGACCCAGAGGTCCGTACCTTCGCGGCCTCAGAGAATTGGCTCCTCC
ACCTTGGTCTCGATGGAACGTTCTGGAATGTACCACAGGCGAGAGGAGCGACACTTGTGCTTTC
GTCCAGCATCACAGACCCTGGAGTGGTGGGACGTTCCGGAAGGTGCCAGCGGAAGGCCACAAAG
CGGTGGTGTGGCCCCGCATCGTCGCCCGTCCCGTGGTTTGTGGCGGACCGTTACCGAAGGTGAG
AATGCGCCGTTAGGGCCTCCTAGTTCCCCATGGTGGGCTGCGGTGGAACGTCCTGGAAGGTGCC
TAGTGTGTCGGTAGGGGGCGTGTCCTCTTCCGTTCCCAGTCCGCCAGGGCATCCTGTGCGTCAC
TTCCGGCTCCCTCTCCGCCCACCAGTGTGTGTCCCAAATCTAAAATCCGTAGGATGTCTGCTAG
CCGCTCTCGCCCTTGGCTCTGAACCCCTCAGGTTGAAGTTCCTGGGCCCCGAGTCGGCGGCGTG
GGGAAACTGGCTGTATCTTCCGTGAGCATGGGCGGAGGCTGTGCATAAACTCCAGTGGCAGCCC
TCAGAACTGAGCCGGGGACCGGGGGCACCTGCCCTGGAGTCAGCCCAGGTCAATTTAGGGACCC
TTGGCACCGGGCGCCCAGGTGGCGGGCTTCGCCGGGCTGGACGCACAGCCTTACTTTGTTGGAG
ACTAGCATGTTGGGGTCAACATTCATGCAAACCAGGACTCCTGCCTCTTCCTCCAGCTGTGTCT
CTCTGCTTGGGCAGTTGCTTTGATCCATGTGGTTCATCTTTGAGATTCACTCCTCACAAGTGCC
CTCAGCATGTCATCAGCAGCAAAATCCCAAGTGCTGGAGGAGACAGCTCCTGGCTGTGAAGAGG
AGCCAAAAGGGAAAACACTTTTCACTTGGGGGTCTCTTTTTGGTCACCGGAGTGAGAAGATTGT
CTTTACTAAAGGTGATGGCAGCCCAGAGGAGAGCCTGCTTACTGTCACCATCACGGAGACTACT
GTCATTGAGTCGGACCTCGGCGTGTGGAGTTCAAGAGCTCTCATCTACCTCACGCTGTGGTTCT
TCTTCAGCTTCTGTACTCTGTTCCTCAACAAGTACATCCTGTCTCTGTTAGAAGGAGAGCCTAG
CATGTTAGGTGCTGTGCAGATGCTGTCAACGACATTAATTGGATGTGTTAAAATATTTGTTCCT
TGCTGTTTATATCAACACAAAACCCGGCTCTCTTACCCACCCAATTTCATCATGACTATGCTCT
TCGTGGGCCTTATGAGGTTTGCAACGGTGGTTTTAGGGCTAGTTAGCCTCAAGAACGTGGCAGT
GTCCTTTGCTGAGACGGTGAAGAGCTCCGCTCCCATTTTCACTGTAATCATGTCTCGGATGATT
CTGGGGGAGTACACAGGGCTGCTGGTCAACCTGTCCCTCATCCCAGTCATGGGAGGACTAGCGT
TATGCACTGCCACGGAAATAAGCTTCAACATCCTGGGGTTTTCAGCTGCACTATCCACCAACAT
TATGGATTGTTTGCAGAATGTTTTTTCAAAAAAGCTTCTCAGTGGGGACAAATACAGGTTCTCG
GCCCCGGAACTGCAATTCTACACCAGTGCTGCTGCTGTGGCCTTGCTGATTCCAGCATGGACCT
TCTTCATGGATGTCCCTGTGATTGGTGGGAGTGGGAAGAGCTTCAGCTACAGCCAGGACATCGT
GCTGTTGCTGCTGACAGATGGCGCCTTGTTTCACCTTCAGAGTGTCACTGCATATGCCCTGATG
GGAAAGATCTCCCCTGTGACTTTCAGTGTCGCCAGTACTGTGAAGCACGCCTTGTCCATCTGGC
TTAGCATCATCGTTTTTGGAAACAAAATCACCAGCCTGTCGGCCATTGGCACCATCCTTGTCAC
AGTGGGTGTCCTGCTCTACAACAAGGCCAGGCAGTATCAGCAAGAGACTATGCAGAGTCTGGTC
ACAGCCACCAGCCAAGGCCCAAACGATGACACAGAGCCACTGGTTTCCCAAGACTCTAGACAGC
ACCACTGATCACCTGATGTTTGACCAGGTCCAGACTGTCCCTCTGTACTCTGTGCTGGAACAGA
GAAGCAAGTGATGCAGGGCAGGTCTCTTGCTCCTTTCTGGACATAAAATGGGGAATTTGGGACT
CAGCTTCTGCCTGATAGAGCCCTGCAGGAAGATTCAAATGACCTGTAGCTCCTCTGGCTGCATT
TGAACCAATGTCTCTGTGCCCAGCCTACAACTGGGCAATATCTCTGTGGGGCCAACTATGGAAT
AAGCACAGGCTCCAGTACCAACGGAAGTTGCTG

hide sequence

RefSeq Acc Id:

XM_006239572 ⟹ XP_006239634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,465,627 - 171,493,317 (+)	NCBI
mRatBN7.2	5	166,185,179 - 166,211,055 (+)	NCBI
Rnor_6.0	5	173,024,338 - 173,050,228 (+)	NCBI
Rnor_5.0	5	176,499,465 - 176,521,588 (+)	NCBI

Sequence:

show sequence

CGTAGGTTCGCCATTGAGCGCTTCGCGTACTCTGACTTTCTAGTCAGATTTTAGGCTCCTTGAA
ACCAAACCCTGGTTTGACCCAGAGGTCCGTACCTTCGCGGCCTCAGAGAATTGGCTCCTCCACC
TTGGTCTCGATGGAACGTTCTGGAATGTACCACAGGCGAGAGGAGCGACACTTGTGCTTTCGTC
CAGCATCACAGACCCTGGAGTGGTGGGACGTTCCGGAAGGTGCCAGCGGAAGGCCACAAAGCGG
TGGTGTGGCCCCGCATCGTCGCCCGTCCCGTGGTTTGTGGCGGACCGTTACCGAAGCCTTACTT
TGTTGGAGACTAGCATGTTGGGGTCAACATTCATGCAAACCAGGACTCCTGCCTCTTCCTCCAG
CTGTGTCTCTCTGCTTGGGCAGTTGCTTTGATCCATGTGGTTCATCTTTGAGATTCACTCCTCA
CAAGTGCCCTCAGCATGTCATCAGCAGCAAAATCCCAAGTGCTGGAGGAGACAGCTCCTGGCTG
TGAAGAGGAGCCAAAAGGGAAAACACTTTTCACTTGGGGGTCTCTTTTTGGTCACCGGAGTGAG
AAGATTGTCTTTACTAAAGGTGATGGCAGCCCAGAGGAGAGCCTGCTTACTGTCACCATCACGG
AGACTACTGTCATTGAGTCGGACCTCGGCGTGTGGAGTTCAAGAGCTCTCATCTACCTCACGCT
GTGGTTCTTCTTCAGCTTCTGTACTCTGTTCCTCAACAAGTACATCCTGTCTCTGTTAGAAGGA
GAGCCTAGCATGTTAGGTGCTGTGCAGATGCTGTCAACGACATTAATTGGATGTGTTAAAATAT
TTGTTCCTTGCTGTTTATATCAACACAAAACCCGGCTCTCTTACCCACCCAATTTCATCATGAC
TATGCTCTTCGTGGGCCTTATGAGGTTTGCAACGGTGGTTTTAGGGCTAGTTAGCCTCAAGAAC
GTGGCAGTGTCCTTTGCTGAGACGGTGAAGAGCTCCGCTCCCATTTTCACTGTAATCATGTCTC
GGATGATTCTGGGGGAGTACACAGGGCTGCTGGTCAACCTGTCCCTCATCCCAGTCATGGGAGG
ACTAGCGTTATGCACTGCCACGGAAATAAGCTTCAACATCCTGGGGTTTTCAGCTGCACTATCC
ACCAACATTATGGATTGTTTGCAGAATGTTTTTTCAAAAAAGCTTCTCAGTGGGGACAAATACA
GGTTCTCGGCCCCGGAACTGCAATTCTACACCAGTGCTGCTGCTGTGGCCTTGCTGATTCCAGC
ATGGACCTTCTTCATGGATGTCCCTGTGATTGGTGGGAGTGGGAAGAGCTTCAGCTACAGCCAG
GACATCGTGCTGTTGCTGCTGACAGATGGCGCCTTGTTTCACCTTCAGAGTGTCACTGCATATG
CCCTGATGGGAAAGATCTCCCCTGTGACTTTCAGTGTCGCCAGTACTGTGAAGCACGCCTTGTC
CATCTGGCTTAGCATCATCGTTTTTGGAAACAAAATCACCAGCCTGTCGGCCATTGGCACCATC
CTTGTCACAGTGGGTGTCCTGCTCTACAACAAGGCCAGGCAGTATCAGCAAGAGACTATGCAGA
GTCTGGTCACAGCCACCAGCCAAGGCCCAAACGATGACACAGAGCCACTGGTTTCCCAAGACTC
TAGACAGCACCACTGATCACCTGATGTTTGACCAGGTCCAGACTGTCCCTCTGTACTCTGTGCT
GGAACAGAGAAGCAAGTGATGCAGGGCAGGTCTCTTGCTCCTTTCTGGACATAAAATGGGGAAT
TTGGGACTCAGCTTCTGCCTGATAGAGCCCTGCAGGAAGATTCAAATGACCTGTAGCTCCTCTG
GCTGCATTTGAACCAATGTCTCTGTGCCCAGCCTACAACTGGGCAATATCTCTGTGGGGCCAAC
TATGGAATAAGCACAGGCTCCAGTACCAACGGAAGTTGCTGTCTGCTTGATGCCATCCAGGAGA
CCTAAATTGTTCTATGCCCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACC
ACCACCACCACCACCACCACCACCACAGGCCCTGAAGTCTTTTGGTTCTTGACAGTCTATGACA
CAGACATTCCAGATGCCAGTGACTCTAGCATGAGACACAAAACCCCGAGAAACCAGAGTGGCAG
ACAGAACAGATAAGTGTCCCCTACGATGGAGGGACAGTGCTATGTGAAGGAAAAGTATCCCCTT
CTTGACCTGTGCTACACTGAACTACCCTGTTCCAGGGTTGTTGCCCTGTGTTTCTGCTACCCAT
TTGGTGATTGCCCCACTCTGGGAAGTTGTGTAAAAATCTCTTGATTCGAACAGATGCTCTCGAG
TGCTTTTCCATTTTGAGTATGATAAATGTGAAGCAGGCTGTTCCGAATGGCACAGTTGTCTGCC
CTGTGAAGATTCCTGTGGATGATAGGGAAGTTTTAAAGAGCTTTTGAGTGTTTACAGGTTATGT
TGTAGTTAAAGGGACACTGCCTTTCGACAAAGCAGGTGCCTTCAGAGGTTTCTCGAGTCTCTGC
ATGTAAGGTACATGGAAGACTACACCCACAGCTGGCTCTTCACTGGGGACCAAATGATGACTGC
CTGAGCTACCAGGTACCCAGAGCTTAAGGTGAAGTGGAGGCCAACAGTGGGGCCTTGGGTGTGA
GACACTGAGGTTCTACATTACTGAACATTGTGTGAGTCATGTGTGGGGTGCAGTCTGTTGCCAG
CCAGTCTGTAAGACTCTGTCCATTACATATGAGCTGAAGCCACTGGTACTTCTTGTCCAGGTCT
TACTGGTCCTTCCTGCTGTATGTCTTACTGCCCACGGTGCCACTGCTTTCTAAGTTGGCTTCAT
ACCTGGAAAGTATGAAAATAGCCCCTCAAGGAGATGTTGGGGTGAAAATGAGCAATAATTATGT
CTACATTTTATTTACTTGAACAAGTCATCTGCCATGATGATGGATCAAAATGGGGCCTTTTAAT
CTATAAGCCACCTTTTAAAAAAAGCAACCTGTGTTGGACACTGACGAGGTGTCTTTACTGTGCT
ATGTAAGGTCACCCACCCCCATTATGAAGACGTTCCCTCATTTGACTTTGTCCAGGTTTCTGCT
TCCTTCCAGTGCACGACAGGTGGCAGATGTTGGATTAATCTGTACAGTGGGCCTGTCTACTCAA
GACCTGGCTGTGCAGCTGCAGATACTGAAGAGTGTGTGCTCATGGATACTGGTCGGAAGATCTC
TGGCCTCCCACAGACCTTGCCAAAGGATGCTCAGAGCTCCACGCACTTGGCTTCTTACTATTTG
GAATTTCTGCCTGTGTCCTATGTGTAATTAGGAAATAGCCTATTGTGACTTGTTCTAGTCACCC
CTCCCCTACACCACCAGACTCAGCCTGTTTTGATTTTCTAAGTTTTTGGACTAGAAGCAAAAAC
AAAGATTTTTCTTAAAGCAATTTCCTGTAAAGCTGCTTTTCAGACTTGTCTTCACAGGTGGAAA
GATCATGAACTCTGCCGCTTCCATTAGCTCTTCCAAGACATGGCTAGGGTGAGAGTCTTTGAAT
GGCCCTGCTTGACCATTTGTTATGACCATTCCATAACAATATTTTTTAATTAACTTTGTTAGTA
TTTCATAGAATACTGTGTTCTTCATGAATTGTTACTGATGTACATGTAGAAATATTGGCACCAC
GTGTCATTACTTATCCTGGATAATTCCTCCTGAGTCTATATCATTGTCTGGTCTGTTGTAAACA
ACACTGGATTGACCTGAGCCAGCCATCTTCTTACTCACTGCACCCATGGTTAAAAAGATATGCA
CATTTCTAATTTCAAAAATACTTTAGGGACTATAGAGACAGACTAATGGTTAAGAACTAGTATT
ATGTTTCCTGGTGAGGACCCAAGTTCAGTTCCCAAAACTCATTTAGAGTGCTTCACCAACTGCC
TGTAACTCCAGCTTTAGGGATTCTGATGCCTCTGGCTGCGCTGGGCATCTGCATTCAGGCTTGT
GTATGCATATACACATGCACAACTTAAAAATAATGCATTTGCTGGGTGGTTGTGGTACATGCCT
TTAATCCCAGCACTTGTGAAGCAGAAGCAGGTGGATCTCTGTGAGTTTGAGGGCAGTCTGGTCT
ACAGAGCACGTTCCAGGATAGCTAGAGTAATACAGAGAAACCCTGTCTTGAAAAACTAGATAGA
TACACTTTTAAAAATTTCATGCTTTGGGGTATACCTTAGTAGCACATCACTGGCATGCATTATG
GGGCTCTTGAGTTGATCCCAGCAGCAGACATTGGATAGAGGGATGAAGGGGAGAAAAGCCCCTC
CCCCAAACTTCCACTAGTAAAAGACAAGGAAAAATTTTTTTAATGTATTCCTGATTTCTATGCA
TTGATGTTTTGCCTGCATGTGTATCTGTATGAGAGTGTTGGATCCCCTGGAACAGATAGTTATG
AGCTGCCATGTGGCTCCTGGGAATTTCATTTGGGTCCTCTTGAAGATCAGCCATCTTACCAGCT
CTTGTTTTGTTTATTTTTAAACTACGTCATCATGGCACATACATTAGACTTACATAGTAATTCA
AGACTAGTTCGGGCTACATATTGAGACCAAGTTTCAAAATAAATTTTATTATTTCTTGAATACC
AGGATTATAATCGTTCCTCAGGTAGTGGTGGTTTACACTTTTAATCCCAGTACTCAGGAGATAG
AGACAGGTGATTCTTTGTGAGTTCCAGGCTAGCCTAGTCTACAAAGCCAGTTCTAGGATTGCCA
GGGCCATGTCTCAAAAAACAAAATTTGAGATAAATAAAAATGATGAATCAGAGGAGATTAAATA
ATAAAGGTGGGCTGGAGAGATAGCTCAGCGGTTAAGAGCATTGACTGCTCTTCCAGAGGTCCTG
AGTTCAATTCCCAGCAACCACATGGTGGCTCACAAACAAAAAAGTGGGATGTGATGCCCATTTC
TGGTGTGTCTAAAGACAGCTACAGTATACTCATATATATTAAATCTTAAAAGAAAAGAAAGAAA
AAAGAATAAAAGCTGCTCATGGGATTCAGCCAAGTGATATCTTCTTAACATTGGAAAAGGGTAA
ATAAATATGTTACTATGGGAAACCATGCCAATGCCTTCTGAGATTGCATTTACCTATGTAACCT
ATACTGTCCTTGAAGTCCTTGAACTCTAGACCTTCTAATTCAACATTCTTAGTACTGAGATTAC
AAGTATTTCACCACTCCTGACCCCCTCTGCCTTTGAGCAACAATCTTTTGTTTTTTCTTAACTT
GTAAACATTGACCTCCCCTTCATCTCTTCATTACCTCGACCCTTTGGTTCTTGTGCTTGGGATA
GAACTTAAGGCTTCAAGAATGCAAGCTAGGCTGCTATTCTTTCTCTGAGATATGGCGTCCAGCC
TGTTTTCCTAGTTTATAAATACCTTTGCTCTCTGCATGGATTAGAACAGGACATACTGATTGTG
GACAAATAGTACCCACCACAATTCAAAGTTTAGTAGGTTTTAACTTTGGTGTCTCTGAAGTATG
TTTTCCTGGGGACTCTGATCCTGACTTTGGTGGCTATTGAACCCTCCCTGACATATCCAAGTTT
AGTTTTAAACAAATCAAGTTGGCAAGTTGTGTGTGGTGTTTTTGTTTGTTTTCACTTTTCATTT
CTGGGTCTTAAACTGCATATTAAATTCACTTGTAATGTCTGGATTCAGAGATAGTTGTGAGTCT
GTGTTTACTCAGTGTTGGCGTTTTGGAACAGGCCACAGTTTAGAGTAGTAAGTTGTCTTCGTCA
AAGCCAAGTCATATTTGCTTTATACCAAACAATATTAGAGAACTAAAACACATCATAAAATGTA
TACTGTTTTGTATTTCACCTCTTTCAGTATTTAATTATATTAATGCCTTCTAGAATTCTGTTAG
ATAATTCATTGATTCCTGAAATAAATTGGTATTGTGTAATTAA

hide sequence

RefSeq Acc Id:

XM_006239573 ⟹ XP_006239635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,465,227 - 171,488,220 (+)	NCBI
mRatBN7.2	5	166,185,624 - 166,203,120 (+)	NCBI
Rnor_6.0	5	173,024,656 - 173,042,124 (+)	NCBI
Rnor_5.0	5	176,499,465 - 176,521,588 (+)	NCBI

Sequence:

show sequence

ATGCGCCGTTAGGGCCTCCTAGTTCCCCATGGTGGGCTGCGGTGGAACGTCCTGGAAGGTGCCT
AGTGTGTCGGTAGGGGGCGTGTCCTCTTCCGTTCCCAGTCCGCCAGGGCATCCTGTGCGTCACT
TCCGGCTCCCTCTCCGCCCACCAGTGTGTGTCCCAAATCTAAAATCCGTAGGATGTCTGCTAGC
CGCTCTCGCCCTTGGCTCTGAACCCCTCAGGTTGAAGTTCCTGGGCCCCGAGTCGGCGGCGTGG
GGAAACTGGCTGTATCTTCCGTGAGCATGGGCGGAGGCTGTGCATAAACTCCAGTGGCAGCCCT
CAGAACTGAGCCGGGGACCGGGGGCACCTGCCCTGGAGTCAGCCCAGGTCAATTTAGGGACCCT
TGGCACCGGGCGCCCAGGTGGCGGGCTTCGCCGGGCTGGACGCACAGCCTTACTTTGTTGGAGA
CTAGCATGTTGGGGTCAACATTCATGCAAACCAGGACTCCTGCCTCTTCCTCCAGCTGTGTCTC
TCTGCTTGGGCAGTTGCTTTGATCCATGTGGTTCATCTTTGAGATTCACTCCTCACAAGTGCCC
TCAGCATGTCATCAGCAGCAAAATCCCAAGTGCTGGAGGAGACAGCTCCTGGCTGTGAAGAGGA
GCCAAAAGGGAAAACACTTTTCACTTGGGGGTCTCTTTTTGGTCACCGGAGTGAGAAGATTGTC
TTTACTAAAGGTGATGGCAGCCCAGAGGAGAGCCTGCTTACTGTCACCATCACGGAGACTACTG
TCATTGAGTCGGACCTCGGCGTGTGGAGTTCAAGAGCTCTCATCTACCTCACGCTGTGGTTCTT
CTTCAGCTTCTGTACTCTGTTCCTCAACAAGTACATCCTGTCTCTGTTAGAAGGAGAGCCTAGC
ATGTTAGGTGCTGTGCAGATGCTGTCAACGACATTAATTGGATGTGTTAAAATATTTGTTCCTT
GCTGTTTATATCAACACAAAACCCGGCTCTCTTACCCACCCAATTTCATCATGACTATGCTCTT
CGTGGGCCTTATGAGGTTTGCAACGGTGGTTTTAGGGCTAGTTAGCCTCAAGAACGTGGCAGTG
TCCTTTGCTGAGACGGTGAAGAGCTCCGCTCCCATTTTCACTGTAATCATGTCTCGGATGATTC
TGGGGGAGTACACAGGGCTGCTGGTCAACCTGTCCCTCATCCCAGTCATGGGAGGACTAGCGTT
ATGCACTGCCACGGAAATAAGCTTCAACATCCTGGGGTTTTCAGCTGCACTATCCACCAACATT
ATGGATTGTTTGCAGAATGTTTTTTCAAAAAAGCTTCTCAGTGGGGACAAATACAGGTTCTCGG
CCCCGGAACTGCAATTCTACACCAGTGCTGCTGCTGTGGCCTTGCTGATTCCAGCATGGACCTT
CTTCATGGATGTCCCTGTGATTGGTGGGAGTGGGAAGAGCTTCAGCTACAGCCAGGACATCGTG
CTGTTGCTGCTGACAGATGGCGCCTTGTTTCACCTTCAGAGTGTCACTGCATATGCCCTGATGG
GAAAGATCTCCCCTGTGACTTTCAGACAGGCACTGGTGGCCACAAGTTGTTCCTGAGCTCTTAC
TGTGGAAGTACTGTGACAAGAGAGCTTTCTTTATTGGGTTTGAATCACTGTCTTTGTGTCTTTC
TGTTTTGTTTTGTTTTGT

hide sequence

RefSeq Acc Id:

XM_008764361 ⟹ XP_008762583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,465,222 - 171,488,220 (+)	NCBI
mRatBN7.2	5	166,185,621 - 166,203,120 (+)	NCBI
Rnor_6.0	5	173,024,656 - 173,042,161 (+)	NCBI

Sequence:

show sequence

ATGCGCCGTTAGGGCCTCCTAGTTCCCCATGGTGGGCTGCGGTGGAACGTCCTGGAAGGTGCCT
AGTGTGTCGGTAGGGGGCGTGTCCTCTTCCGTTCCCAGTCCGCCAGGGCATCCTGTGCGTCACT
TCCGGCTCCCTCTCCGCCCACCAGTGTGTGTCCCAAATCTAAAATCCGTAGGATGTCTGCTAGC
CGCTCTCGCCCTTGGCTCTGAACCCCTCAGGTTGAAGTTCCTGGGCCCCGAGTCGGCGGCGTGG
GGAAACTGGCTGTATCTTCCGTGAGCATGGGCGGAGGCTGTGCATAAACTCCAGTGGCAGCCCT
CAGAACTGAGCCGGGGACCGGGGGCACCTGCCCTGGAGTCAGCCCAGGTCAATTTAGGGACCCT
TGGCACCGGGCGCCCAGGTGGCGGGCTTCGCCGGGCTGGACGCACAGCCTTACTTTGTTGGAGA
CTAGCATGTTGGGGTCAACATTCATGCAAACCAGGACTCCTGCCTCTTCCTCCAGCTGTGTCTC
TCTGCTTGGGCAGTTGCTTTGATCCATGTGGTTCATCTTTGAGATTCACTCCTCACAAGTGCCC
TCAGCATGTCATCAGCAGCAAAATCCCAAGTGCTGGAGGAGACAGCTCCTGGCTGTGAAGAGGA
GCCAAAAGGGAAAACACTTTTCACTTGGGGGTCTCTTTTTGGTCACCGGAGTGAGAAGATTGTC
TTTACTAAAGGTGATGGCAGCCCAGAGGAGAGCCTGCTTACTGTCACCATCACGGAGACTACTG
TCATTGAGTCGGACCTCGGCGTGTGGAGTTCAAGAGCTCTCATCTACCTCACGCTGTGGTTCTT
CTTCAGCTTCTGTACTCTGTTCCTCAACAAGTACATCCTGTCTCTGTTAGAAGGAGAGCCTAGC
ATGTTAGGTGCTGTGCAGATGCTGTCAACGACATTAATTGGATGTGTTAAAATATTTGTTCCTT
GCTGTTTATATCAACACAAAACCCGGCTCTCTTACCCACCCAATTTCATCATGACTATGCTCTT
CGTGGGCCTTATGAGGTTTGCAACGGTGGTTTTAGGGCTAGTTAGCCTCAAGAACGTGGCAGTG
TCCTTTGCTGAGACGGTGAAGAGCTCCGCTCCCATTTTCACTGTAATCATGTCTCGGATGATTC
TGGGGGAGTACACAGGGCTGCTGGTCAACCTGTCCCTCATCCCAGTCATGGGAGGACTAGCGTT
ATGCACTGCCACGGAAATAAGCTTCAACATCCTGGGGTTTTCAGCTGCACTATCCACCAACATT
ATGGATTGTTTGCAGAATGTTTTTTCAAAAAAGCTTCTCAGTGGGGACAAATACAGGTTCTCGG
CCCCGGAACTGCAATTCTACACCAGTGCTGCTGCTGTGGCCTTGCTGATTCCAGCATGGACCTT
CTTCATGGATGTCCCTGTGATTGGTGGGAGTGGGAAGAGCTTCAGCTACAGCCAGGACATCGTG
CTGTTGCTGCTGACAGATGGCGCCTTGTTTCACCTTCAGAGTGTCACTGCATATGCCCTGATGG
GAAAGATCTCCCCTGTGACTTTCAGGCACTGGTGGCCACAAGTTGTTCCTGAGCTCTTACTGTG
GAAGTACTGTGACAAGAGAGCTTTCTTTATTGGGTTTGAATCACTGTCTTTGTGTCTTTCTGTT
TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGAGACAGGGTTTCTCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101468	(Get FASTA)	NCBI Sequence Viewer
	XP_006239634	(Get FASTA)	NCBI Sequence Viewer
	XP_006239635	(Get FASTA)	NCBI Sequence Viewer
	XP_008762583	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81309	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000099246
	ENSRNOP00000099246.1

RefSeq Acc Id:

NP_001101468 ⟸ NM_001107998

- UniProtKB:

D4A0R5 (UniProtKB/TrEMBL), A6IUQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSAAKSQVLEETAPGCEEEPKGKTLFTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVI
ESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCC
LYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILG
EYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAP
ELQFYTSAAAVALLIPAWTFFMDVPVIGGSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGK
ISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTVGVLLYNKARQYQQETMQSLVTA
TSQGPNDDTEPLVSQDSRQHH

hide sequence

RefSeq Acc Id:	XP_006239634 ⟸ XM_006239572
- Peptide Label:	isoform X1
- UniProtKB:	D4A0R5 (UniProtKB/TrEMBL), A6IUQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAAKSQVLEETAPGCEEEPKGKTLFTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVI ESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCC LYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILG EYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAP ELQFYTSAAAVALLIPAWTFFMDVPVIGGSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGK ISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTVGVLLYNKARQYQQETMQSLVTA TSQGPNDDTEPLVSQDSRQHH hide sequence

RefSeq Acc Id:

XP_006239635 ⟸ XM_006239573

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSAAKSQVLEETAPGCEEEPKGKTLFTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVI
ESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCC
LYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILG
EYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAP
ELQFYTSAAAVALLIPAWTFFMDVPVIGGSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGK
ISPVTFRQALVATSCS

hide sequence

RefSeq Acc Id:

XP_008762583 ⟸ XM_008764361

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSSAAKSQVLEETAPGCEEEPKGKTLFTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVI
ESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCC
LYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILG
EYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAP
ELQFYTSAAAVALLIPAWTFFMDVPVIGGSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGK
ISPVTFRHWWPQVVPELLLWKYCDKRAFFIGFESLSLCLSVLFCFVLFCFVF

hide sequence

Ensembl Acc Id:

ENSRNOP00000023097 ⟸ ENSRNOT00000023097

Protein Domains

Sugar phosphate transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0R5-F1-model_v2	AlphaFold	D4A0R5	1-405	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694321

Promoter ID:

EPDNEW_R4846

Type:

initiation region

Name:

Slc35e2b_1

Description:

solute carrier family 35, member E2B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	173,024,806 - 173,024,866	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309076	AgrOrtholog
BioCyc Gene	G2FUF-38918	BioCyc
Ensembl Genes	ENSRNOG00000017075	Ensembl
	ENSRNOG00000062404	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000095515	ENTREZGENE
	ENSRNOT00000095515.2	UniProtKB/TrEMBL
InterPro	DUF250	UniProtKB/TrEMBL
	TPT_transporter	UniProtKB/TrEMBL
KEGG Report	rno:313765	UniProtKB/TrEMBL
NCBI Gene	313765	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 35	UniProtKB/TrEMBL
Pfam	TPT	UniProtKB/TrEMBL
PhenoGen	Slc35e2b	PhenoGen
RatGTEx	ENSRNOG00000017075	RatGTEx
	ENSRNOG00000062404	RatGTEx
Superfamily-SCOP	Multidrug resistance efflux transporter EmrE	UniProtKB/TrEMBL
UniProt	A0ABK0L9N7_RAT	UniProtKB/TrEMBL
	A6IUQ8	ENTREZGENE, UniProtKB/TrEMBL
	D4A0R5	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-02-02	Slc35e2b	solute carrier family 35, member E2B	Slc35e2	solute carrier family 35, member E2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc35e2	solute carrier family 35, member E2	Slc35e2_predicted	solute carrier family 35, member E2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc35e2_predicted	solute carrier family 35, member E2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar