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Gene: Dpf3 (double PHD fingers 3) Rattus norvegicus

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Symbol:

Dpf3

Name:

double PHD fingers 3

RGD ID:

1309052

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in muscle cell differentiation and nervous system development. Predicted to be part of nBAF complex. Predicted to be active in nucleus. Orthologous to human DPF3 (double PHD fingers 3); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

D4, zinc and double PHD fingers, family 3; LOC102553599; LOC299186; LOC500691; RGD1563913; RGD1563913; zinc finger protein DPF3; zinc finger protein DPF3-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPF3 (double PHD fingers 3)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):	Dpf3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dpf3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPF3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPF3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dpf3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPF3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DPF3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpf3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dpf3 (double PHD fingers 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRSS8 (serine protease 8)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	DPF3 (double PHD fingers 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dpf3 (double PHD fingers 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dpf3 (D4, zinc and double PHD fingers, family 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dpf3 (D4, zinc and double PHD fingers, family 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	dpff-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dpff-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	d4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	d4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dpf3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dpf3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	108,577,792 - 108,856,724 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	108,577,183 - 108,856,798 (-)	Ensembl				GRCr8
mRatBN7.2	6	102,841,403 - 103,125,558 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	102,846,029 - 103,125,493 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	103,070,943 - 103,287,200 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	103,370,180 - 103,586,420 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	102,739,657 - 102,955,890 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	106,660,569 - 106,971,310 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	106,721,349 - 106,971,250 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	114,855,815 - 114,948,894 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	107,220,740 - 107,441,096 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	100,742,714 - 100,957,100 (-)	NCBI		Celera
RGSC_v3.1	6	107,224,114 - 107,340,405 (-)	NCBI
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (EXP,ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

cyclophosphamide (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glufosinate (ISO)

GSK-J4 (ISO)

inulin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription (IEA)

muscle cell differentiation (ISO)

nervous system development (ISO)

Cellular Component

nBAF complex (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ATP-dependent chromatin remodeling: genetics, genomics and mechanisms.	Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4.	Readout of epigenetic modifications.	Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	The spectrum of SWI/SNF mutations, ubiquitous in human cancers.	Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.

Additional References at PubMed

PMID:17640523	PMID:23785148	PMID:26582913

Genomics

Comparative Map Data

Dpf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	108,577,792 - 108,856,724 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	108,577,183 - 108,856,798 (-)	Ensembl				GRCr8
mRatBN7.2	6	102,841,403 - 103,125,558 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	102,846,029 - 103,125,493 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	103,070,943 - 103,287,200 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	103,370,180 - 103,586,420 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	102,739,657 - 102,955,890 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	106,660,569 - 106,971,310 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	106,721,349 - 106,971,250 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	114,855,815 - 114,948,894 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	107,220,740 - 107,441,096 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	100,742,714 - 100,957,100 (-)	NCBI		Celera
RGSC_v3.1	6	107,224,114 - 107,340,405 (-)	NCBI
Cytogenetic Map	6	q31	NCBI

DPF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	72,609,034 - 72,894,101 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	72,609,034 - 72,894,101 (-)	Ensembl			hg38	GRCh38
GRCh37	14	73,075,742 - 73,360,809 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	72,206,413 - 72,430,562 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	72,145,494 - 72,430,562	NCBI
Celera	14	53,199,840 - 53,423,988 (-)	NCBI		Celera
Cytogenetic Map	14	q24.2	NCBI
HuRef	14	53,252,526 - 53,526,938 (-)	NCBI		HuRef
CHM1_1	14	73,024,008 - 73,299,002 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	66,814,656 - 67,099,787 (-)	NCBI		T2T-CHM13v2.0

Dpf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	83,260,525 - 83,534,510 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	83,260,519 - 83,534,490 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	83,213,751 - 83,487,736 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	83,213,745 - 83,487,716 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	84,370,185 - 84,451,885 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	84,188,054 - 84,377,456 (-)	NCBI		MGSCv36	mm8
Celera	12	84,715,281 - 84,933,664 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	38.64	NCBI

Dpf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	2,454,908 - 2,709,262 (+)	Ensembl
ChiLan1.0	NW_004955523	2,423,035 - 2,718,930 (+)	NCBI	ChiLan1.0	ChiLan1.0

DPF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	73,719,918 - 74,006,234 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	72,936,432 - 73,222,724 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	53,189,348 - 53,475,634 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	72,061,021 - 72,340,379 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	72,061,021 - 72,340,330 (-)	Ensembl			panPan2	panpan1.1

DPF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	46,020,591 - 46,178,600 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	46,030,180 - 46,140,948 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	45,702,134 - 45,960,986 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	46,242,685 - 46,502,777 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	46,246,289 - 46,502,757 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	45,911,551 - 46,170,956 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	45,927,825 - 46,186,744 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	46,318,226 - 46,578,115 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dpf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	29,833,099 - 30,092,643 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	1,986,321 - 2,235,825 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	1,976,323 - 2,235,906 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	95,982,462 - 96,254,318 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	95,974,422 - 96,254,354 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	101,794,920 - 101,849,980 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	49,857,853 - 50,144,326 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	49,857,847 - 49,996,731 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	38,041,977 - 38,319,943 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dpf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	28,518,470 - 28,769,840 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	28,518,435 - 28,779,658 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dpf3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	97,317,366 - 97,591,398 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dpf3
1573 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	26
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000010926
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat

Markers in Region

D6Rat13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	102,872,536 - 102,872,683 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	106,683,885 - 106,684,031	NCBI	Rnor6.0
Rnor_5.0	6	114,818,351 - 114,818,497	UniSTS	Rnor5.0
RGSC_v3.4	6	107,183,275 - 107,183,421	UniSTS	RGSC3.4
RGSC_v3.4	6	107,183,274 - 107,183,421	RGD	RGSC3.4
Celera	6	100,705,264 - 100,705,408	UniSTS
RGSC_v3.1	6	107,186,731 - 107,186,877	RGD
RH 3.4 Map	6	738.1	RGD
RH 3.4 Map	6	738.1	UniSTS
RH 2.0 Map	6	960.2	RGD
SHRSP x BN Map	6	61.2198	RGD
FHH x ACI Map	6	68.02	RGD
Cytogenetic Map	6	q24	UniSTS

D6Got134

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,038,265 - 103,038,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	106,883,362 - 106,883,518	NCBI	Rnor6.0
Rnor_5.0	6	118,654,077 - 118,654,233	UniSTS	Rnor5.0
RGSC_v3.4	6	107,352,699 - 107,352,856	RGD	RGSC3.4
RGSC_v3.4	6	107,352,700 - 107,352,856	UniSTS	RGSC3.4
Celera	6	100,870,688 - 100,870,844	UniSTS
RGSC_v3.1	6	107,356,155 - 107,356,312	RGD
RH 3.4 Map	6	734.4	UniSTS
RH 3.4 Map	6	734.4	RGD
RH 2.0 Map	6	955.2	RGD
Cytogenetic Map	6	q24	UniSTS

RH131793

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	102,900,670 - 102,900,880 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	106,712,017 - 106,712,226	NCBI	Rnor6.0
Rnor_5.0	6	114,846,483 - 114,846,692	UniSTS	Rnor5.0
RGSC_v3.4	6	107,211,408 - 107,211,617	UniSTS	RGSC3.4
Celera	6	100,733,395 - 100,733,604	UniSTS
RH 3.4 Map	6	738.0	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH142995

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	102,910,902 - 102,911,004 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	106,722,249 - 106,722,350	NCBI	Rnor6.0
Rnor_5.0	6	114,856,715 - 114,856,816	UniSTS	Rnor5.0
RGSC_v3.4	6	107,221,640 - 107,221,741	UniSTS	RGSC3.4
Celera	6	100,743,614 - 100,743,715	UniSTS
RH 3.4 Map	6	738.2	UniSTS
Cytogenetic Map	6	q24	UniSTS

AU047050

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	102,987,893 - 102,988,001 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	106,831,737 - 106,831,844	NCBI	Rnor6.0
Rnor_6.0	6	106,799,190 - 106,799,297	NCBI	Rnor6.0
Rnor_5.0	6	114,932,417 - 114,932,524	UniSTS	Rnor5.0
Rnor_5.0	6	114,965,142 - 114,965,249	UniSTS	Rnor5.0
RGSC_v3.4	6	107,300,269 - 107,300,376	UniSTS	RGSC3.4
Celera	6	100,820,014 - 100,820,121	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	91	59	6	355	191	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010926 ⟹ ENSRNOP00000010926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	108,641,157 - 108,784,902 (-)	Ensembl
mRatBN7.2 Ensembl	6	102,910,003 - 103,125,493 (-)	Ensembl
Rnor_6.0 Ensembl	6	106,721,349 - 106,971,250 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097275 ⟹ ENSRNOP00000093966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	108,577,183 - 108,856,625 (-)	Ensembl
mRatBN7.2 Ensembl	6	102,846,029 - 103,125,493 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153738 ⟹ ENSRNOP00000099978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	108,641,157 - 108,856,798 (-)	Ensembl

RefSeq Acc Id:

NM_001191818 ⟹ NP_001178747

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,641,157 - 108,856,625 (-)	NCBI
mRatBN7.2	6	102,910,003 - 103,125,493 (-)	NCBI
Rnor_6.0	6	106,721,349 - 106,971,250 (-)	NCBI
Rnor_5.0	6	114,855,815 - 114,948,894 (-)	NCBI
Celera	6	100,742,714 - 100,957,100 (-)	NCBI

Sequence:

show sequence

TATTCTGTTACATTGTAGCAAAATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTTGGGGAC
CAGTTCTACAAGGAAGCCATTGAGCACTGTCGGAGCTACAACTCGAGGCTGTGTGCAGAGCGGA
GCGTGAGGCTCCCCTTCCTGGACTCGCAGACTGGGGTGGCTCAGAACAACTGCTACATCTGGAT
GGAGAAGAGGCACCGAGGCCCAGGCCTTGCCCCGGGCCAGCTGTATACTTACCCCGCCCGCTGC
TGGCGTAAGAAGCGACGATTGCACCCCCCAGAGGACCCAAAGCTGCGACTCCTGGAGATAAAAC
CGGAAGTAGAACTGCCCCTGAAGAAAGATGGATTTACCTCTGAGAGCACCACACTGGAAGCCTT
GCTTCGTGGTGAGGGAGTGGAGAAGAAGGTGGATGCCAGAGAAGAGGAGAGCATCCAGGAGATA
CAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGGAATGAAGAGGAAGATTTGGAAGAAG
ATATTCCCAAGCGCAAGAACAGGACCAGAGGACGGGCTCGTGGCTCTGCAGGCGGCAGGAGGAG
GCATGATGCGGCCTCTCAGGAAGACCATGACAAACCCTACGTCTGTGACATCTGTGGCAAGCGC
TACAAGAACCGGCCGGGACTCAGCTACCACTATGCTCACACTCACCTGGCCAGCGAGGAGGGAG
ATGAAGCCCAAGACCAGGAGACCCGATCCCCACCCAACCACAGAAACGAGAACCATAGACCCCA
GAAAGGACCAGACGGGACAGTCATTCCTAATAACTACTGTGACTTCTGCTTGGGGGGCTCCAAC
ATGAACAAGAAGAGTGGAAGGCCCGAAGAACTTGTGTCCTGTGCAGACTGTGGACGCTCTGCTC
ATTTGGGAGGAGAAGGCAGGAAGGAGAAGGAGGCAGCGGCCGCAGCACGGACCACGGAGGACTT
ATTCGGTTCCACGTCAGAAAGTGACACCTCAACTTTCTACGGCTTTGATGAGGACGATTTGGAA
GAGCCTCGCTCCTGTCGAGGACGCCGCAGTGGCCGGGGTTCACCCACAGCAGATAAAAAGAGCA
GCTGCTGAGCGCATGGGACAGACTGTCTGGCCAATTAGCCTCCCCGCCCCTGACTCTTGTCATT
GTCTAGTTCTGATATATATTTTTAAATGAAAGACGACTTGGGCATTTCCCTTTATCCTTGCTTT
TATCTTCTGCCTTCCATGTGTCCC

hide sequence

RefSeq Acc Id:

XM_008764747 ⟹ XP_008762969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,577,792 - 108,856,652 (-)	NCBI
mRatBN7.2	6	102,841,403 - 103,125,517 (-)	NCBI
Rnor_6.0	6	106,660,569 - 106,971,234 (-)	NCBI

Sequence:

show sequence

AGCAAAATGGCGACTGTCATTCACAACCCCCTGAAAGCGAACTCAGTTTCTGTCAGAATCCAAA
GGGAGGCATCGTCACAGGGTAAACCTTGAAGACAGTCCAGTCTGCAAACCTCCTGGGGGACATC
CTAGATCCACAGAACAACAGGGATCCATGGTGATCGAGTTGGGGCGGTTACATCGTCCTTTGAC
TCCTTGGAAGCATGCAGTCACAAACCCAGGGACTGTGCTCACCTCAGGATGCTGTGAAATGAGG
CTTGGGGACCAGTTCTACAAGGAAGCCATTGAGCACTGTCGGAGCTACAACTCGAGGCTGTGTG
CAGAGCGGAGCGTGAGGCTCCCCTTCCTGGACTCGCAGACTGGGGTGGCTCAGAACAACTGCTA
CATCTGGATGGAGAAGAGGCACCGAGGCCCAGGCCTTGCCCCGGGCCAGCTGTATACTTACCCC
GCCCGCTGCTGGCGTAAGAAGCGACGATTGCACCCCCCAGAGGACCCAAAGCTGCGACTCCTGG
AGATAAAACCGGAAGTAGAACTGCCCCTGAAGAAAGATGGATTTACCTCTGAGAGCACCACACT
GGAAGCCTTGCTTCGTGGTGAGGGAGTGGAGAAGAAGGTGGATGCCAGAGAAGAGGAGAGCATC
CAGGAGATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGGAATGAAGAGGAAGATT
TGGAAGAAGATATTCCCAAGCGCAAGAACAGGACCAGAGGACGGGCTCGTGGCTCTGCAGGCGG
CAGGAGGAGGCATGATGCGGCCTCTCAGGAAGACCATGACAAACCCTACGTCTGTGACATCTGT
GGCAAGCGCTACAAGAACCGGCCGGGACTCAGCTACCACTATGCTCACACTCACCTGGCCAGCG
AGGAGGGAGATGAAGCCCAAGACCAGGAGACCCGATCCCCACCCAACCACAGAAACGAGAACCA
TAGACCCCAGAAAGGACCAGACGGGACAGTCATTCCTAATAACTACTGTGACTTCTGCTTGGGG
GGCTCCAACATGAACAAGAAGAGTGGAAGGCCCGAAGAACTTGTGTCCTGTGCAGACTGTGGAC
GCTCTGGTCACCCAACTTGCCTGCAGTTCACTCTGAATATGACTGAGGCAGTTAAGACCTACAA
GTGGCAGTGCATAGAATGCAAATCCTGTATCCTGTGTGGGACCTCGGAGAATGATGACCAGCTA
CTCTTCTGTGATGACTGCGATCGAGGCTATCACATGTACTGTTTAAATCCCCCAGTGGCTGAGC
CCCCAGAAGGAAGCTGGAGCTGCCATTTATGCTGGGAGCTGCTCAAAGAGAAAGCATCAGCCTT
TGGCTGCCAGGCCTAGGGCCCCAATCACGGAATGCAGCCCGCCACTAGAGAGGCTGACCCGAAG
CCCTATTCAACCCATACAGGATGGAGGTCTCCTCCTGTATATGCACACAGACCAACTGCAAGGA
AAACGGATAATTACAGAAGGGTATGGACAAGTGGAGCGGTGAGAGCAAGGTCTCCATTCACCCC
TCGCCCTACCCGCGACCTCCCGCCCCTGCACATACTTCAGCCAGCGCTTCCTCATTTCTGCCAG
AGGGAACCTGGCATATTTGAAGAGCAATCCAGCCCCTGCTCTGTGGAACCTTCCTCATGTTCAC
CTTCACATGCATCCCTCGCGTTGCTTCCCATTTTGGAGGAAGCCATTTTGTGACTGCTCATCAA
CCACTTGCGTGTTGCTTTAGTGGGGTTCTTGTTTTGTTTCGTTTTCTTCTATTGTGCTTCAAGA
ACTGATCACGCAGGGTTCTCACCCTTAGTTTCGGCTCTTCATCCTAAAACTATCACAGAGGAAC
AAAATGCTGTGGGTGGAGCTCGTGTTCATCACTAGTCTCACCGGAAACATCTATGGTCGGAGGC
CATCTTGAAGACGGAACTTGGAAATGTCTTGCTTTCCACAGGCTCTGCTAAGAAGAGGAGCTGT
AGTTTCCGAGCCTTGACGGTAGCATCTACCGCTGGGATGGTCTTGATCCACTGCACTGCCACTC
GATGGGGGCTTCAGAGGGCCTGGGAGATGGGAGGAAAACTTGGGGCCCCGCTATAACCAGTTAG
TATTTGCTGTTCCTCAAGAGGGACTTTTCGAGGGACCAGGTGGTTCCTTGACCTTCAGAACTGT
GGTGTCCTTGAGGTGAGACAACACAGTCTCTAAACACAGAATCCTGCCCCCAGCCGAATTGAGT
GTGAAGGTCTCTGGGAGTGGGACTCAGTCTTTGGAGACGTGGGCAAACGGTGCCCATTCACAGT
GTCGGATCGAGGAGACTGTAGTAGCTTTGAGAAAACCTCCAGTATTGGTGCTACAGTAAGGATT
TCTTTTCTGGGCAATTTCTTCCTTCTATGTATTATTTGCCAGTGACCACTGAGATGTGACTGGA
AATTTTAGAACGGAGGAGAGATGAACATTACTTAACC

hide sequence

RefSeq Acc Id:

XM_008764749 ⟹ XP_008762971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,577,792 - 108,856,724 (-)	NCBI
mRatBN7.2	6	102,841,403 - 103,125,558 (-)	NCBI
Rnor_6.0	6	106,660,569 - 106,971,310 (-)	NCBI

Sequence:

show sequence

CGTGCTCTGATTGGCCTGCCGCTTCCCCTGAGCGAACCTTTAGAACTCTGAGACAGACAATATT
CTGTTACATTGTAGCAAAATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTTGGGGACCAGT
TCTACAAGGAAGCCATTGAGCACTGTCGGAGCTACAACTCGAGGCTGTGTGCAGAGCGGAGCGT
GAGGCTCCCCTTCCTGGACTCGCAGACTGGGGTGGCTCAGAACAACTGCTACATCTGGATGGAG
AAGAGGCACCGAGGCCCAGGCCTTGCCCCGGGCCAGCTGTATACTTACCCCGCCCGCTGCTGGC
GTAAGAAGCGACGATTGCACCCCCCAGAGGACCCAAAGCTGCGACTCCTGGAGATAAAACCGGA
AGTAGAACTGCCCCTGAAGAAAGATGGATTTACCTCTGAGAGCACCACACTGGAAGCCTTGCTT
CGTGGTGAGGGAGTGGAGAAGAAGGTGGATGCCAGAGAAGAGGAGAGCATCCAGGAGATACAGA
GGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGGAATGAAGAGGAAGATTTGGAAGAAGATAT
TCCCAAGCGCAAGAACAGGACCAGAGGACGGGCTCGTGGCTCTGCAGGCGGCAGGAGGAGGCAT
GATGCGGCCTCTCAGGAAGACCATGACAAACCCTACGTCTGTGACATCTGTGGCAAGCGCTACA
AGAACCGGCCGGGACTCAGCTACCACTATGCTCACACTCACCTGGCCAGCGAGGAGGGAGATGA
AGCCCAAGACCAGGAGACCCGATCCCCACCCAACCACAGAAACGAGAACCATAGACCCCAGAAA
GGACCAGACGGGACAGTCATTCCTAATAACTACTGTGACTTCTGCTTGGGGGGCTCCAACATGA
ACAAGAAGAGTGGAAGGCCCGAAGAACTTGTGTCCTGTGCAGACTGTGGACGCTCTGGTCACCC
AACTTGCCTGCAGTTCACTCTGAATATGACTGAGGCAGTTAAGACCTACAAGTGGCAGTGCATA
GAATGCAAATCCTGTATCCTGTGTGGGACCTCGGAGAATGATGACCAGCTACTCTTCTGTGATG
ACTGCGATCGAGGCTATCACATGTACTGTTTAAATCCCCCAGTGGCTGAGCCCCCAGAAGGAAG
CTGGAGCTGCCATTTATGCTGGGAGCTGCTCAAAGAGAAAGCATCAGCCTTTGGCTGCCAGGCC
TAGGGCCCCAATCACGGAATGCAGCCCGCCACTAGAGAGGCTGACCCGAAGCCCTATTCAACCC
ATACAGGATGGAGGTCTCCTCCTGTATATGCACACAGACCAACTGCAAGGAAAACGGATAATTA
CAGAAGGGTATGGACAAGTGGAGCGGTGAGAGCAAGGTCTCCATTCACCCCTCGCCCTACCCGC
GACCTCCCGCCCCTGCACATACTTCAGCCAGCGCTTCCTCATTTCTGCCAGAGGGAACCTGGCA
TATTTGAAGAGCAATCCAGCCCCTGCTCTGTGGAACCTTCCTCATGTTCACCTTCACATGCATC
CCTCGCGTTGCTTCCCATTTTGGAGGAAGCCATTTTGTGACTGCTCATCAACCACTTGCGTGTT
GCTTTAGTGGGGTTCTTGTTTTGTTTCGTTTTCTTCTATTGTGCTTCAAGAACTGATCACGCAG
GGTTCTCACCCTTAGTTTCGGCTCTTCATCCTAAAACTATCACAGAGGAACAAAATGCTGTGGG
TGGAGCTCGTGTTCATCACTAGTCTCACCGGAAACATCTATGGTCGGAGGCCATCTTGAAGACG
GAACTTGGAAATGTCTTGCTTTCCACAGGCTCTGCTAAGAAGAGGAGCTGTAGTTTCCGAGCCT
TGACGGTAGCATCTACCGCTGGGATGGTCTTGATCCACTGCACTGCCACTCGATGGGGGCTTCA
GAGGGCCTGGGAGATGGGAGGAAAACTTGGGGCCCCGCTATAACCAGTTAGTATTTGCTGTTCC
TCAAGAGGGACTTTTCGAGGGACCAGGTGGTTCCTTGACCTTCAGAACTGTGGTGTCCTTGAGG
TGAGACAACACAGTCTCTAAACACAGAATCCTGCCCCCAGCCGAATTGAGTGTGAAGGTCTCTG
GGAGTGGGACTCAGTCTTTGGAGACGTGGGCAAACGGTGCCCATTCACAGTGTCGGATCGAGGA
GACTGTAGTAGCTTTGAGAAAACCTCCAGTATTGGTGCTACAGTAAGGATTTCTTTTCTGGGCA
ATTTCTTCCTTCTATGTATTATTTGCCAGTGACCACTGAGATGTGACTGGAAATTTTAGAACGG
AGGAGAGATGAACATTACTTAACC

hide sequence

RefSeq Acc Id:

XM_008764751 ⟹ XP_008762973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,577,792 - 108,793,790 (-)	NCBI
mRatBN7.2	6	102,841,403 - 103,062,529 (-)	NCBI
Rnor_6.0	6	106,660,569 - 106,905,969 (-)	NCBI

Sequence:

show sequence

AAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGGTCCACGGGATTTTATCACGTACGTTAAA
AACCAAACCCCAAACCAAACGCACATGCCTCACTTTTCCCGTGTTCACAAGGCAACCGCAGAGT
GACAGTCCAGGGGGAGGGAGGAAGCAAGAGAGAATTCTTAATCCTGGGAGCAGGAAATGCAGAA
AATGCCCTGGGAACCTAAGATTCCCCTGGTTCATGTCAGCCCACAGCAGCCCATATATAACCCT
GGGCAAGCGTCCCCCTGGCTGCCCGGCTTATCTCAGGCTCACATTCGTGGGCTCACCAGCCTGG
AGTCTCTTTGGATGTTGGCCAGGCCAGCTGGGAACGGTAAGAGCTGAGATAGCGACAGAGACTC
ACGTCCTTGCATGCTGGAATGAGGCCTCCCTTTTCTCCCACTTTCCTGTCCTTTAGAGTTTTCT
TCTGGCATTGGGAAATAGTCTTTCTGGCCTTACATCTCTAATCTCGGAAGAAAGGAGACCCTGA
TTTTCAGGCTTGGGGACCAGTTCTACAAGGAAGCCATTGAGCACTGTCGGAGCTACAACTCGAG
GCTGTGTGCAGAGCGGAGCGTGAGGCTCCCCTTCCTGGACTCGCAGACTGGGGTGGCTCAGAAC
AACTGCTACATCTGGATGGAGAAGAGGCACCGAGGCCCAGGCCTTGCCCCGGGCCAGCTGTATA
CTTACCCCGCCCGCTGCTGGCGTAAGAAGCGACGATTGCACCCCCCAGAGGACCCAAAGCTGCG
ACTCCTGGAGATAAAACCGGAAGTAGAACTGCCCCTGAAGAAAGATGGATTTACCTCTGAGAGC
ACCACACTGGAAGCCTTGCTTCGTGGTGAGGGAGTGGAGAAGAAGGTGGATGCCAGAGAAGAGG
AGAGCATCCAGGAGATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGGAATGAAGA
GGAAGATTTGGAAGAAGATATTCCCAAGCGCAAGAACAGGACCAGAGGACGGGCTCGTGGCTCT
GCAGGCGGCAGGAGGAGGCATGATGCGGCCTCTCAGGAAGACCATGACAAACCCTACGTCTGTG
ACATCTGTGGCAAGCGCTACAAGAACCGGCCGGGACTCAGCTACCACTATGCTCACACTCACCT
GGCCAGCGAGGAGGGAGATGAAGCCCAAGACCAGGAGACCCGATCCCCACCCAACCACAGAAAC
GAGAACCATAGACCCCAGAAAGGACCAGACGGGACAGTCATTCCTAATAACTACTGTGACTTCT
GCTTGGGGGGCTCCAACATGAACAAGAAGAGTGGAAGGCCCGAAGAACTTGTGTCCTGTGCAGA
CTGTGGACGCTCTGGTCACCCAACTTGCCTGCAGTTCACTCTGAATATGACTGAGGCAGTTAAG
ACCTACAAGTGGCAGTGCATAGAATGCAAATCCTGTATCCTGTGTGGGACCTCGGAGAATGATG
ACCAGCTACTCTTCTGTGATGACTGCGATCGAGGCTATCACATGTACTGTTTAAATCCCCCAGT
GGCTGAGCCCCCAGAAGGAAGCTGGAGCTGCCATTTATGCTGGGAGCTGCTCAAAGAGAAAGCA
TCAGCCTTTGGCTGCCAGGCCTAGGGCCCCAATCACGGAATGCAGCCCGCCACTAGAGAGGCTG
ACCCGAAGCCCTATTCAACCCATACAGGATGGAGGTCTCCTCCTGTATATGCACACAGACCAAC
TGCAAGGAAAACGGATAATTACAGAAGGGTATGGACAAGTGGAGCGGTGAGAGCAAGGTCTCCA
TTCACCCCTCGCCCTACCCGCGACCTCCCGCCCCTGCACATACTTCAGCCAGCGCTTCCTCATT
TCTGCCAGAGGGAACCTGGCATATTTGAAGAGCAATCCAGCCCCTGCTCTGTGGAACCTTCCTC
ATGTTCACCTTCACATGCATCCCTCGCGTTGCTTCCCATTTTGGAGGAAGCCATTTTGTGACTG
CTCATCAACCACTTGCGTGTTGCTTTAGTGGGGTTCTTGTTTTGTTTCGTTTTCTTCTATTGTG
CTTCAAGAACTGATCACGCAGGGTTCTCACCCTTAGTTTCGGCTCTTCATCCTAAAACTATCAC
AGAGGAACAAAATGCTGTGGGTGGAGCTCGTGTTCATCACTAGTCTCACCGGAAACATCTATGG
TCGGAGGCCATCTTGAAGACGGAACTTGGAAATGTCTTGCTTTCCACAGGCTCTGCTAAGAAGA
GGAGCTGTAGTTTCCGAGCCTTGACGGTAGCATCTACCGCTGGGATGGTCTTGATCCACTGCAC
TGCCACTCGATGGGGGCTTCAGAGGGCCTGGGAGATGGGAGGAAAACTTGGGGCCCCGCTATAA
CCAGTTAGTATTTGCTGTTCCTCAAGAGGGACTTTTCGAGGGACCAGGTGGTTCCTTGACCTTC
AGAACTGTGGTGTCCTTGAGGTGAGACAACACAGTCTCTAAACACAGAATCCTGCCCCCAGCCG
AATTGAGTGTGAAGGTCTCTGGGAGTGGGACTCAGTCTTTGGAGACGTGGGCAAACGGTGCCCA
TTCACAGTGTCGGATCGAGGAGACTGTAGTAGCTTTGAGAAAACCTCCAGTATTGGTGCTACAG
TAAGGATTTCTTTTCTGGGCAATTTCTTCCTTCTATGTATTATTTGCCAGTGACCACTGAGATG
TGACTGGAAATTTTAGAACGGAGGAGAGATGAACATTACTTAACC

hide sequence

RefSeq Acc Id:

XM_039112020 ⟹ XP_038967948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,630,586 - 108,856,642 (-)	NCBI
mRatBN7.2	6	102,899,432 - 103,120,423 (-)	NCBI

RefSeq Acc Id:

XM_039112021 ⟹ XP_038967949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,577,792 - 108,851,411 (-)	NCBI
mRatBN7.2	6	102,841,403 - 103,120,429 (-)	NCBI

RefSeq Acc Id:

XM_039112022 ⟹ XP_038967950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,641,468 - 108,856,642 (-)	NCBI
mRatBN7.2	6	102,910,322 - 103,120,424 (-)	NCBI

RefSeq Acc Id:

XM_063261728 ⟹ XP_063117798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,630,586 - 108,856,724 (-)	NCBI

RefSeq Acc Id:

XR_010052068

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,630,586 - 108,856,638 (-)	NCBI

RefSeq Acc Id:

XR_010052069

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,630,586 - 108,856,723 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178747	(Get FASTA)	NCBI Sequence Viewer
	NP_001421215	(Get FASTA)	NCBI Sequence Viewer
	NP_001421216	(Get FASTA)	NCBI Sequence Viewer
	XP_008762969	(Get FASTA)	NCBI Sequence Viewer
	XP_008762971	(Get FASTA)	NCBI Sequence Viewer
	XP_008762973	(Get FASTA)	NCBI Sequence Viewer
	XP_038967948	(Get FASTA)	NCBI Sequence Viewer
	XP_038967949	(Get FASTA)	NCBI Sequence Viewer
	XP_038967950	(Get FASTA)	NCBI Sequence Viewer
	XP_063117798	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010926.7
	ENSRNOP00000093966
	ENSRNOP00000093966.1
	ENSRNOP00000099978
	ENSRNOP00000099978.1

RefSeq Acc Id:

NP_001178747 ⟸ NM_001191818

- UniProtKB:

D3Z9E7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGP
GLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVE
KKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQE
DHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTV
IPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSES
DTSTFYGFDEDDLEEPRSCRGRRSGRGSPTADKKSSC

hide sequence

RefSeq Acc Id:

XP_008762971 ⟸ XM_008764749

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGP
GLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVE
KKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQE
DHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTV
IPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCI
LCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA

hide sequence

RefSeq Acc Id:

XP_008762969 ⟸ XM_008764747

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVIELGRLHRPLTPWKHAVTNPGTVLTSGCCEMRLGDQFYKEAIEHCRSYNSRLCAERSVRLPF
LDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELP
LKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRK
NRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQ
ETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQ
FTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCH
LCWELLKEKASAFGCQA

hide sequence

RefSeq Acc Id:

XP_008762973 ⟸ XM_008764751

- Peptide Label:

isoform X4

- Sequence:

show sequence

MEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEA
LLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRR
RHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRP
QKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQ
CIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGC
QA

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Ensembl Acc Id:

ENSRNOP00000010926 ⟸ ENSRNOT00000010926

RefSeq Acc Id:	XP_038967949 ⟸ XM_039112021
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038967948 ⟸ XM_039112020
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038967950 ⟸ XM_039112022
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000093966 ⟸ ENSRNOT00000097275

RefSeq Acc Id:	XP_063117798 ⟸ XM_063261728
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000099978 ⟸ ENSRNOT00000153738

Protein Domains

C2H2-type PHD-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z9E7-F1-model_v2	AlphaFold	D3Z9E7	1-357	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694711

Promoter ID:

EPDNEW_R5235

Type:

single initiation site

Name:

Dpf3_1

Description:

double PHD fingers 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	106,971,241 - 106,971,301	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309052	AgrOrtholog
BioCyc Gene	G2FUF-36858	BioCyc
Ensembl Genes	ENSRNOG00000008086	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010926.8	UniProtKB/TrEMBL
	ENSRNOT00000097275	ENTREZGENE
	ENSRNOT00000097275.2	UniProtKB/TrEMBL
	ENSRNOT00000153738	ENTREZGENE
	ENSRNOT00000153738.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Requiem/DPF_N_dom	UniProtKB/TrEMBL
	ZnF-Chromatin_assoc	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:299186	UniProtKB/TrEMBL
NCBI Gene	299186	ENTREZGENE
PANTHER	HL01030P-RELATED	UniProtKB/TrEMBL
	JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN DPF3	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN DPF3	UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/TrEMBL
	Requiem_N	UniProtKB/TrEMBL
PhenoGen	Dpf3	PhenoGen
PROSITE	ZF_PHD_2	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008086	RatGTEx
SMART	PHD	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
	SSF57903	UniProtKB/TrEMBL
UniProt	A0A8I6AL27	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L5V5_RAT	UniProtKB/TrEMBL
	D3Z9E7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Dpf3	double PHD fingers 3	Dpf3	D4, zinc and double PHD fingers, family 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Dpf3	D4, zinc and double PHD fingers, family 3	LOC102553599	zinc finger protein DPF3-like	Data merged from RGD:7499888	737654	PROVISIONAL
2015-07-29	Dpf3	D4, zinc and double PHD fingers, family 3	RGD1563913	RGD1563913	Data merged from RGD:1563913	737654	PROVISIONAL
2013-12-17	LOC102553599	zinc finger protein DPF3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Dpf3	D4, zinc and double PHD fingers, family 3	Dpf3_predicted	D4, zinc and double PHD fingers, family 3 (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1563913	RGD1563913	RGD1563913_predicted	RGD1563913 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1563913_predicted	RGD1563913 (predicted)	LOC500691	LOC500691	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500691	LOC500691			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Dpf3_predicted	D4, zinc and double PHD fingers, family 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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