Son (SON DNA and RNA binding protein) - Rat Genome Database

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Gene: Son (SON DNA and RNA binding protein) Rattus norvegicus
Analyze
Symbol: Son
Name: SON DNA and RNA binding protein
RGD ID: 1309013
Description: Predicted to enable RNA binding activity and RS domain binding activity. Predicted to be involved in mRNA processing; negative regulation of apoptotic process; and regulation of mRNA splicing, via spliceosome. Predicted to be located in nuclear speck. Human ortholog(s) of this gene implicated in congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay. Orthologous to human SON (SON DNA and RNA binding protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304092; Son cell proliferation protein; Son DNA binding protein; SON DNA-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Son-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,336,818 - 44,409,127 (+)NCBIGRCr8
mRatBN7.21130,850,890 - 30,923,167 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,892,005 - 30,923,167 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,585,938 - 39,617,088 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,257,371 - 32,288,521 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,422,571 - 31,453,675 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,806,598 - 31,837,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,415,323 - 35,446,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,621,000 - 31,652,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,660,060 - 31,691,231 (+)NCBI
Celera1130,559,447 - 30,590,598 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-aza-2'-deoxycytidine  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenzo[a,l]pyrene  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
metformin  (EXP)
methapyrilene  (EXP)
methoxychlor  (EXP)
miconazole  (ISO)
mono(2-ethyl-5-oxohexyl) phthalate  (ISO)
naphthalene  (ISO)
nickel dichloride  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
tamibarotene  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. De Novo Mutations in SON Disrupt RNA Splicing of Genes Essential for Brain Development and Metabolism, Causing an Intellectual-Disability Syndrome. Kim JH, etal., Am J Hum Genet. 2016 Sep 1;99(3):711-9. doi: 10.1016/j.ajhg.2016.06.029. Epub 2016 Aug 18.
4. SON haploinsufficiency causes impaired pre-mRNA splicing of CAKUT genes and heterogeneous renal phenotypes. Kim JH, etal., Kidney Int. 2019 Jun;95(6):1494-1504. doi: 10.1016/j.kint.2019.01.025. Epub 2019 Mar 15.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Phenotypic expansion in Zhu-Tokita-Takenouchi-Kim syndrome caused by de novo variants in the SON gene. Slezak R, etal., Mol Genet Genomic Med. 2020 Oct;8(10):e1432. doi: 10.1002/mgg3.1432. Epub 2020 Jul 24.
10. De Novo Truncating Variants in SON Cause Intellectual Disability, Congenital Malformations, and Failure to Thrive. Tokita MJ, etal., Am J Hum Genet. 2016 Sep 1;99(3):720-7. doi: 10.1016/j.ajhg.2016.06.035. Epub 2016 Aug 18.
11. A new self-attenuated therapeutic influenza vaccine that uses host cell-restricted attenuation by artificial microRNAs. Wen K, etal., Int J Pharm. 2022 Jan 25;612:121325. doi: 10.1016/j.ijpharm.2021.121325. Epub 2021 Dec 6.
Additional References at PubMed
PMID:10509013   PMID:12477932   PMID:15798186   PMID:21504830   PMID:22658674   PMID:22681889   PMID:31505169  


Genomics

Comparative Map Data
Son
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,336,818 - 44,409,127 (+)NCBIGRCr8
mRatBN7.21130,850,890 - 30,923,167 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,892,005 - 30,923,167 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,585,938 - 39,617,088 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,257,371 - 32,288,521 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,422,571 - 31,453,675 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,806,598 - 31,837,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,415,323 - 35,446,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,621,000 - 31,652,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,660,060 - 31,691,231 (+)NCBI
Celera1130,559,447 - 30,590,598 (+)NCBICelera
Cytogenetic Map11q11NCBI
SON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,543,038 - 33,577,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,543,038 - 33,577,481 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,915,344 - 34,949,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,837,220 - 33,871,682 (+)NCBINCBI36Build 36hg18NCBI36
Build 342133,837,219 - 33,871,682NCBI
Celera2120,114,984 - 20,149,446 (+)NCBICelera
Cytogenetic Map21q22.11ENTREZGENE
HuRef2120,393,812 - 20,428,237 (+)NCBIHuRef
CHM1_12134,478,027 - 34,512,464 (+)NCBICHM1_1
T2T-CHM13v2.02131,924,877 - 31,959,322 (+)NCBIT2T-CHM13v2.0
Son
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,444,712 - 91,476,080 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,444,394 - 91,476,109 (+)EnsemblGRCm39 Ensembl
GRCm381691,647,824 - 91,679,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,647,506 - 91,679,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371691,648,069 - 91,679,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,536,739 - 91,568,048 (+)NCBIMGSCv36mm8
Celera1692,724,593 - 92,757,782 (+)NCBICelera
Cytogenetic Map16C3.3- C4NCBI
cM Map1653.22NCBI
Son
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,974,725 - 33,006,297 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,974,656 - 33,007,073 (+)NCBIChiLan1.0ChiLan1.0
SON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22229,660,517 - 29,694,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12124,519,903 - 24,553,199 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,910,024 - 19,944,511 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12133,282,691 - 33,317,063 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,282,910 - 33,316,007 (+)Ensemblpanpan1.1panPan2
SON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13128,165,758 - 28,198,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3128,163,496 - 28,196,420 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03128,370,779 - 28,403,717 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3128,370,816 - 28,402,620 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13128,237,644 - 28,270,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03128,251,590 - 28,284,083 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,751,345 - 28,784,243 (+)NCBIUU_Cfam_GSD_1.0
Son
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,714,897 - 28,746,647 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365008,722,087 - 8,752,844 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365008,721,155 - 8,752,906 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,162,116 - 197,194,078 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,162,075 - 197,193,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,972,806 - 207,004,139 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SON
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,610,076 - 58,643,758 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660711,111,733 - 1,145,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Son
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,763,010 - 21,797,817 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,762,273 - 21,798,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Son
294 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:603
Count of miRNA genes:288
Interacting mature miRNAs:366
Transcripts:ENSRNOT00000002769, ENSRNOT00000043410
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
RH127092  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,922,750 - 30,922,972 (+)MAPPERmRatBN7.2
mRatBN7.2518,469,521 - 18,469,743 (-)MAPPERmRatBN7.2
mRatBN7.2518,469,521 - 18,469,743 (+)MAPPERmRatBN7.2
mRatBN7.21130,922,750 - 30,922,972 (-)MAPPERmRatBN7.2
Rnor_6.01131,837,353 - 31,837,574NCBIRnor6.0
Rnor_6.0518,442,651 - 18,442,872NCBIRnor6.0
Rnor_5.0523,233,857 - 23,234,078UniSTSRnor5.0
Rnor_5.01135,446,086 - 35,446,307UniSTSRnor5.0
RGSC_v3.4518,796,322 - 18,796,543UniSTSRGSC3.4
RGSC_v3.41131,651,735 - 31,651,956UniSTSRGSC3.4
Celera1130,590,182 - 30,590,403UniSTS
Celera517,788,011 - 17,788,232UniSTS
Cytogenetic Map5q12UniSTS
Cytogenetic Map11q11UniSTS
BF403131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,909,898 - 30,910,083 (+)MAPPERmRatBN7.2
Rnor_6.01131,824,501 - 31,824,685NCBIRnor6.0
Rnor_5.01135,433,234 - 35,433,418UniSTSRnor5.0
RGSC_v3.41131,638,883 - 31,639,067UniSTSRGSC3.4
Celera1130,577,330 - 30,577,514UniSTS
RH 3.4 Map11178.4UniSTS
Cytogenetic Map11q11UniSTS
SON  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2518,469,460 - 18,469,551 (-)MAPPERmRatBN7.2
mRatBN7.21130,922,942 - 30,923,040 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,545 - 31,837,642NCBIRnor6.0
Rnor_5.01135,446,278 - 35,446,375UniSTSRnor5.0
RGSC_v3.41131,651,927 - 31,652,024UniSTSRGSC3.4
Celera1130,590,374 - 30,590,471UniSTS
Cytogenetic Map11q11UniSTS
AU067731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,907,067 - 30,907,175 (+)MAPPERmRatBN7.2
Rnor_6.01131,821,670 - 31,821,777NCBIRnor6.0
Rnor_5.01135,430,403 - 35,430,510UniSTSRnor5.0
RGSC_v3.41131,636,052 - 31,636,159UniSTSRGSC3.4
Celera1130,574,499 - 30,574,606UniSTS
Cytogenetic Map11q11UniSTS
RH139817  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,923,382 - 30,923,593 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,985 - 31,838,195NCBIRnor6.0
Rnor_5.01135,446,718 - 35,446,928UniSTSRnor5.0
RGSC_v3.41131,652,367 - 31,652,577UniSTSRGSC3.4
Celera1130,590,814 - 30,591,024UniSTS
RH 3.4 Map11176.7UniSTS
Cytogenetic Map11q11UniSTS
GDB:335409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,922,942 - 30,923,111 (+)MAPPERmRatBN7.2
mRatBN7.2257,767,720 - 57,767,887 (+)MAPPERmRatBN7.2
Rnor_6.0257,873,107 - 57,873,273NCBIRnor6.0
Rnor_6.01131,837,545 - 31,837,713NCBIRnor6.0
Rnor_5.01135,446,278 - 35,446,446UniSTSRnor5.0
Rnor_5.0279,360,669 - 79,360,835UniSTSRnor5.0
RGSC_v3.4258,282,464 - 58,282,630UniSTSRGSC3.4
RGSC_v3.41131,651,927 - 31,652,095UniSTSRGSC3.4
Celera1130,590,374 - 30,590,542UniSTS
Celera253,380,092 - 53,380,258UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map2q16UniSTS
REN85702  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,083 - 30,899,336 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,686 - 31,813,938NCBIRnor6.0
Rnor_5.01135,422,419 - 35,422,671UniSTSRnor5.0
RGSC_v3.41131,628,068 - 31,628,320UniSTSRGSC3.4
Celera1130,566,515 - 30,566,767UniSTS
Cytogenetic Map11q11UniSTS
REN85704  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,557 - 30,899,807 (+)MAPPERmRatBN7.2
Rnor_6.01131,814,160 - 31,814,409NCBIRnor6.0
Rnor_5.01135,422,893 - 35,423,142UniSTSRnor5.0
RGSC_v3.41131,628,542 - 31,628,791UniSTSRGSC3.4
Celera1130,566,989 - 30,567,238UniSTS
Cytogenetic Map11q11UniSTS
REN85703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,329 - 30,899,579 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,932 - 31,814,181NCBIRnor6.0
Rnor_5.01135,422,665 - 35,422,914UniSTSRnor5.0
RGSC_v3.41131,628,314 - 31,628,563UniSTSRGSC3.4
Celera1130,566,761 - 30,567,010UniSTS
Cytogenetic Map11q11UniSTS
REN85711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,901,055 - 30,901,283 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,658 - 31,815,885NCBIRnor6.0
Rnor_5.01135,424,391 - 35,424,618UniSTSRnor5.0
RGSC_v3.41131,630,040 - 31,630,267UniSTSRGSC3.4
Celera1130,568,487 - 30,568,714UniSTS
Cytogenetic Map11q11UniSTS
REN85712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,901,250 - 30,901,486 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,853 - 31,816,088NCBIRnor6.0
Rnor_5.01135,424,586 - 35,424,821UniSTSRnor5.0
RGSC_v3.41131,630,235 - 31,630,470UniSTSRGSC3.4
Celera1130,568,682 - 30,568,917UniSTS
Cytogenetic Map11q11UniSTS
REN85731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,905,580 - 30,905,837 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,183 - 31,820,439NCBIRnor6.0
Rnor_5.01135,428,916 - 35,429,172UniSTSRnor5.0
RGSC_v3.41131,634,565 - 31,634,821UniSTSRGSC3.4
Celera1130,573,012 - 30,573,268UniSTS
Cytogenetic Map11q11UniSTS
REN85732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,905,813 - 30,906,074 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,416 - 31,820,676NCBIRnor6.0
Rnor_5.01135,429,149 - 35,429,409UniSTSRnor5.0
RGSC_v3.41131,634,798 - 31,635,058UniSTSRGSC3.4
Celera1130,573,245 - 30,573,505UniSTS
Cytogenetic Map11q11UniSTS
REN85733  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,906,050 - 30,906,305 (+)MAPPERmRatBN7.2
Rnor_6.01131,820,653 - 31,820,907NCBIRnor6.0
Rnor_5.01135,429,386 - 35,429,640UniSTSRnor5.0
RGSC_v3.41131,635,035 - 31,635,289UniSTSRGSC3.4
Celera1130,573,482 - 30,573,736UniSTS
Cytogenetic Map11q11UniSTS
MARC_11511-11512:1001088403:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,900,703 - 30,901,164 (+)MAPPERmRatBN7.2
Rnor_6.01131,815,306 - 31,815,766NCBIRnor6.0
Rnor_5.01135,424,039 - 35,424,499UniSTSRnor5.0
RGSC_v3.41131,629,688 - 31,630,148UniSTSRGSC3.4
Celera1130,568,135 - 30,568,595UniSTS
Cytogenetic Map11q11UniSTS
RH124814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2518,469,458 - 18,469,554 (-)MAPPERmRatBN7.2
mRatBN7.21130,922,939 - 30,923,035 (+)MAPPERmRatBN7.2
Rnor_6.01131,837,542 - 31,837,637NCBIRnor6.0
Rnor_5.01135,446,275 - 35,446,370UniSTSRnor5.0
RGSC_v3.41131,651,924 - 31,652,019UniSTSRGSC3.4
Celera1130,590,371 - 30,590,466UniSTS
Cytogenetic Map11q11UniSTS
ECD01730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,899,165 - 30,900,021 (+)MAPPERmRatBN7.2
mRatBN7.21130,899,165 - 30,900,052 (+)MAPPERmRatBN7.2
Rnor_6.01131,813,768 - 31,814,654NCBIRnor6.0
Rnor_6.01131,813,768 - 31,814,623NCBIRnor6.0
Rnor_5.01135,422,501 - 35,423,387UniSTSRnor5.0
Rnor_5.01135,422,501 - 35,423,356UniSTSRnor5.0
RGSC_v3.41131,628,150 - 31,629,005UniSTSRGSC3.4
RGSC_v3.41131,628,150 - 31,629,036UniSTSRGSC3.4
Celera1130,566,597 - 30,567,483UniSTS
Celera1130,566,597 - 30,567,452UniSTS
Cytogenetic Map11q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_358129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000002769   ⟹   ENSRNOP00000002769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,923,167 (+)Ensembl
Rnor_6.0 Ensembl1131,806,618 - 31,837,763 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043410   ⟹   ENSRNOP00000044186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,909,159 (+)Ensembl
Rnor_6.0 Ensembl1131,806,618 - 31,823,761 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101000   ⟹   ENSRNOP00000094650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,916,133 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106626   ⟹   ENSRNOP00000089452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,923,004 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108078   ⟹   ENSRNOP00000087454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,005 - 30,907,475 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108574   ⟹   ENSRNOP00000096891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,892,015 - 30,923,167 (+)Ensembl
RefSeq Acc Id: NM_001170327   ⟹   NP_001163798
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,976 - 44,409,127 (+)NCBI
mRatBN7.21130,892,015 - 30,923,167 (+)NCBI
Rnor_6.01131,806,618 - 31,837,769 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
RGSC_v3.41131,621,000 - 31,652,151 (+)RGD
Celera1130,559,447 - 30,590,598 (+)RGD
Sequence:
RefSeq Acc Id: NM_001170328   ⟹   NP_001163799
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,976 - 44,395,119 (+)NCBI
mRatBN7.21130,892,015 - 30,909,159 (+)NCBI
Rnor_6.01131,806,618 - 31,823,761 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
RGSC_v3.41131,621,000 - 31,652,151 (+)RGD
Celera1130,559,447 - 30,576,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248064   ⟹   XP_006248126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,409,127 (+)NCBI
mRatBN7.21130,891,917 - 30,923,167 (+)NCBI
Rnor_6.01131,806,598 - 31,837,635 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248065   ⟹   XP_006248127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,393,442 (+)NCBI
mRatBN7.21130,891,917 - 30,907,482 (+)NCBI
Rnor_6.01131,806,598 - 31,822,084 (+)NCBI
Rnor_5.01135,415,323 - 35,446,502 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088422   ⟹   XP_038944350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,336,818 - 44,409,127 (+)NCBI
mRatBN7.21130,850,890 - 30,923,167 (+)NCBI
RefSeq Acc Id: XM_063270595   ⟹   XP_063126665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,405,389 (+)NCBI
RefSeq Acc Id: XM_063270596   ⟹   XP_063126666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,404,685 (+)NCBI
RefSeq Acc Id: XR_005491037
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,405,389 (+)NCBI
mRatBN7.21130,891,917 - 30,921,571 (+)NCBI
RefSeq Acc Id: XR_010055960
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,377,966 - 44,405,389 (+)NCBI
RefSeq Acc Id: NP_001163798   ⟸   NM_001170327
- Peptide Label: isoform 1
- UniProtKB: F1MAQ7 (UniProtKB/TrEMBL),   A0A8I6GL96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001163799   ⟸   NM_001170328
- Peptide Label: isoform 2
- UniProtKB: E9PTE1 (UniProtKB/TrEMBL),   A0A8I6GL96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248126   ⟸   XM_006248064
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GL96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248127   ⟸   XM_006248065
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A372 (UniProtKB/TrEMBL),   A0A8I6GL96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000044186   ⟸   ENSRNOT00000043410
RefSeq Acc Id: ENSRNOP00000002769   ⟸   ENSRNOT00000002769
RefSeq Acc Id: XP_038944350   ⟸   XM_039088422
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GL96 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087454   ⟸   ENSRNOT00000108078
RefSeq Acc Id: ENSRNOP00000094650   ⟸   ENSRNOT00000101000
RefSeq Acc Id: ENSRNOP00000096891   ⟸   ENSRNOT00000108574
RefSeq Acc Id: ENSRNOP00000089452   ⟸   ENSRNOT00000106626
RefSeq Acc Id: XP_063126665   ⟸   XM_063270595
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A8R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126666   ⟸   XM_063270596
- Peptide Label: isoform X4
Protein Domains
DRBM   G-patch

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAQ7-F1-model_v2 AlphaFold F1MAQ7 1-2446 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698060
Promoter ID:EPDNEW_R8585
Type:initiation region
Name:Son_1
Description:Son DNA binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01131,806,631 - 31,806,691EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309013 AgrOrtholog
BioCyc Gene G2FUF-21879 BioCyc
Ensembl Genes ENSRNOG00000002021 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002769 ENTREZGENE
  ENSRNOT00000002769.9 UniProtKB/TrEMBL
  ENSRNOT00000043410 ENTREZGENE
  ENSRNOT00000043410.6 UniProtKB/TrEMBL
  ENSRNOT00000101000.1 UniProtKB/TrEMBL
  ENSRNOT00000106626.1 UniProtKB/TrEMBL
  ENSRNOT00000108078.1 UniProtKB/TrEMBL
  ENSRNOT00000108574.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888991 IMAGE-MGC_LOAD
InterPro dsRNA-bd-like_dom UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  SON UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:304092 UniProtKB/TrEMBL
MGC_CLONE MGC:73000 IMAGE-MGC_LOAD
NCBI Gene 304092 ENTREZGENE
PANTHER PROTEIN SON UniProtKB/TrEMBL
  PTHR46528 UniProtKB/TrEMBL
Pfam DND1_DSRM UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
  RSRP UniProtKB/TrEMBL
PhenoGen Son PhenoGen
PROSITE DS_RBD UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002021 RatGTEx
SMART G_patch UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A8I6A372 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARI2_RAT UniProtKB/TrEMBL
  A0A8I6GL96 ENTREZGENE, UniProtKB/TrEMBL
  E9PTE1 ENTREZGENE, UniProtKB/TrEMBL
  F1MAQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q6PDU3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Son  SON DNA and RNA binding protein  Son  Son DNA binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-28 Son  Son DNA binding protein  Son  Son cell proliferation protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Son  Son cell proliferation protein  Son_predicted  Son cell proliferation protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Son_predicted  Son cell proliferation protein (predicted)      Symbol and Name status set to approved 70820 APPROVED