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Gene: Tent5b (terminal nucleotidyltransferase 5B) Rattus norvegicus

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Symbol:

Tent5b

Name:

terminal nucleotidyltransferase 5B

RGD ID:

1308967

Description:

Predicted to enable poly(A) RNA polymerase activity. Predicted to be involved in several processes, including negative regulation of apoptotic process; negative regulation of cell population proliferation; and positive regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Orthologous to human TENT5B (terminal nucleotidyltransferase 5B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam46b; family with sequence similarity 46, member B; hypothetical protein LOC313019; LOC313019; non-canonical poly(A) polymerase FAM46B; putative nucleotidyltransferase FAM46B; RGD1308967; similar to hypothetical protein MGC16491

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TENT5B (terminal nucleotidyltransferase 5B)	HGNC	Ensembl, HomoloGene, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Tent5b (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tent5b (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TENT5B (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TENT5B (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tent5b (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TENT5B (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TENT5B (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tent5b (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tent5b (terminal nucleotidyltransferase 5B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NUP43 (nucleoporin 43)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tent5b (terminal nucleotidyltransferase 5B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TENT5B (terminal nucleotidyltransferase 5B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pqn-44	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tent5ba	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	tent5bb	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG46385	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG46385	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tent5b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Tent5b-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,979,238 - 150,986,548 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	27,212,316 - 27,214,238 (+)	Ensembl				GRCr8
GRCr8 Ensembl	5	150,979,225 - 150,987,133 (+)	Ensembl				GRCr8
mRatBN7.2	5	145,695,358 - 145,702,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	145,695,362 - 145,706,073 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	11	13,725,306 - 13,727,228 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	148,397,527 - 148,404,867 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	150,167,126 - 150,174,472 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	150,153,689 - 150,161,032 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	151,692,068 - 151,699,381 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	151,692,108 - 151,700,246 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	155,354,242 - 155,361,532 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	151,605,289 - 151,612,602 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	144,116,104 - 144,123,417 (+)	NCBI		Celera
RGSC_v3.1	5	151,615,578 - 151,622,581 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chloroprene (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

dimethylarsinic acid (ISO)

dioxygen (ISO)

disulfiram (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fenamidone (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

inulin (ISO)

isobutanol (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

methylarsonic acid (ISO)

Monobutylphthalate (ISO)

nickel atom (ISO)

niclosamide (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paraquat (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulforaphane (ISO)

sunitinib (ISO)

titanium dioxide (EXP,ISO)

trichostatin A (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA stabilization (IBA)

negative regulation of apoptotic process (ISO,ISS)

negative regulation of cell cycle (ISO,ISS)

negative regulation of cell population proliferation (ISO,ISS)

positive regulation of translation (ISO,ISS)

Cellular Component

cytoplasm (IEA,ISO,ISS)

nucleus (IEA,ISO,ISS)

Molecular Function

nucleotidyltransferase activity (IEA)

poly(A) RNA polymerase activity (IBA,IEA,ISO,ISS)

protein binding (ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Tent5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,979,238 - 150,986,548 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	27,212,316 - 27,214,238 (+)	Ensembl				GRCr8
GRCr8 Ensembl	5	150,979,225 - 150,987,133 (+)	Ensembl				GRCr8
mRatBN7.2	5	145,695,358 - 145,702,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	145,695,362 - 145,706,073 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	11	13,725,306 - 13,727,228 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	148,397,527 - 148,404,867 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	150,167,126 - 150,174,472 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	150,153,689 - 150,161,032 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	151,692,068 - 151,699,381 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	151,692,108 - 151,700,246 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	155,354,242 - 155,361,532 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	151,605,289 - 151,612,602 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	144,116,104 - 144,123,417 (+)	NCBI		Celera
RGSC_v3.1	5	151,615,578 - 151,622,581 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

TENT5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	27,005,020 - 27,012,850 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	27,005,020 - 27,012,850 (-)	Ensembl			hg38	GRCh38
GRCh37	1	27,331,511 - 27,339,341 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	27,204,098 - 27,211,914 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	27,015,654 - 27,023,469	NCBI
Celera	1	25,728,601 - 25,736,421 (-)	NCBI		Celera
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	25,584,362 - 25,592,182 (-)	NCBI		HuRef
CHM1_1	1	27,444,808 - 27,452,630 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	26,843,086 - 26,850,914 (-)	NCBI		T2T-CHM13v2.0

Tent5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	133,207,444 - 133,215,251 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	133,207,443 - 133,215,249 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	133,480,133 - 133,487,940 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	133,480,132 - 133,487,938 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	133,036,048 - 133,043,855 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	132,752,213 - 132,760,012 (+)	NCBI		MGSCv36	mm8
Celera	4	131,648,884 - 131,656,821 (+)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	66.25	NCBI

Tent5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	6,345,152 - 6,354,047 (-)	Ensembl
ChiLan1.0	NW_004955452	6,345,152 - 6,353,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

TENT5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	199,858,773 - 199,866,683 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	198,962,962 - 198,970,861 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	26,266,007 - 26,273,904 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	27,321,321 - 27,329,182 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	27,321,321 - 27,329,184 (-)	Ensembl			panPan2	panpan1.1

TENT5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	73,156,894 - 73,165,745 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	73,131,861 - 73,164,506 (+)	NCBI			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	69,733,364 - 69,742,178 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
UU_Cfam_GSD_1.0	2	72,552,265 - 72,561,087 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tent5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	45,561,150 - 45,568,620 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	11,385,883 - 11,393,422 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	11,384,300 - 11,393,363 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TENT5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	84,304,395 - 84,310,733 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	84,303,495 - 84,310,957 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	77,873,704 - 77,880,952 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TENT5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	105,754,958 - 105,763,188 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	105,755,518 - 105,762,284 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	10,676,450 - 10,684,416 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tent5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	10,964,925 - 10,976,330 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tent5b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	24,753,066 - 24,760,157 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tent5b
43 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH142757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	13,727,189 - 13,727,311 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	145,702,353 - 145,702,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	12,277,694 - 12,277,815	NCBI	Rnor6.0
Rnor_6.0	5	151,699,067 - 151,699,188	NCBI	Rnor6.0
Rnor_5.0	11	15,939,402 - 15,939,523	UniSTS	Rnor5.0
Rnor_5.0	5	155,361,218 - 155,361,339	UniSTS	Rnor5.0
RGSC_v3.4	5	151,605,482 - 151,605,603	UniSTS	RGSC3.4
RGSC_v3.4	11	13,866,378 - 13,866,499	UniSTS	RGSC3.4
Celera	11	13,746,394 - 13,746,515	UniSTS
Celera	5	144,123,103 - 144,123,224	UniSTS
RH 3.4 Map	5	988.7	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	11	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	66	143	51	50	23	28	23	6	238	126	9	118	65	92	27	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000086144 ⟹ ENSRNOP00000070098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	145,695,362 - 145,706,073 (+)	Ensembl
Rnor_6.0 Ensembl	5	151,692,108 - 151,700,246 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166946 ⟹ ENSRNOP00000098830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,979,225 - 150,987,133 (+)	Ensembl

RefSeq Acc Id:

NM_001107907 ⟹ NP_001101377

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,979,238 - 150,986,548 (+)	NCBI
mRatBN7.2	5	145,695,358 - 145,702,668 (+)	NCBI
Rnor_6.0	5	151,692,068 - 151,699,381 (+)	NCBI
Rnor_5.0	5	155,354,242 - 155,361,532 (+)	NCBI
RGSC_v3.4	5	151,605,289 - 151,612,602 (-)	RGD
Celera	5	144,116,104 - 144,123,417 (+)	RGD

Sequence:

show sequence

GTTAGTCCTCCCAGCGGTCGGAGTTGTTCCCTGGGTTTGCCTCGCCGCCGCCGGGTCCCCGCAC
CCCGCCTTGGCCCGTGCACAGCCACTCTCCCTGCCCTCCTCGCCTTCACCATTCCCGGGTCTCT
GCCGTCGAGGCACCGGGGCCGGGTGAATGATGCCGTCGGAGAGTGGAGATGAGAGCCTGGAGCA
GCCAGCTGCGCAGGTGGGGACCGGTGCAGCCTCGGCAGTGGCCACGGCTGGGGCGGCCGGCGGC
GGCCCGGACCTGGAGGCCTCCTCGGCCTCTCTGGGACGGCACCAGAGCCGACTGAGCTGGCCAC
AGGTGAAGCGGCTGGACGCGCTGCTCAAAGAGCCCATCCCCATTCACGGGCGAGGCAACTTCCC
CACGCTGAGCGTGCAACCCCAGCAGATTGTACAGGTAGTTCGCAGTAGCTTGGAAGAACAGGGA
CTGCATGTCCATAGCGTGCGCTTGCACGGCTCAGCTGCGAGCCACGTGCTGCACCCGGAGAGTG
GCCTAGGCTACAAGGACCTGGACCTGGTGTTCCAGATGGACCTGCAGAGTGAGGCATCCTTCCA
GCTGACCAAGGCTGTGGTCCTGGCTTGCCTGCTGGACTTCCTGCCTGCGGGAGTGAGCCGGGCC
AAGATAACGCCGCTGACACTCAAGGAGGCCTATGTGCAGAAACTGGTGAAAGTGTGCACAGACC
TGGACCGCTGGAGCCTCATCTCACTGTCCAACAAGAGCGGCAAGAATGTGGAACTCAAGTTCGT
GGACTCCGTGAGGCGCCAGTTCGAATTCAGCATCGACTCCTTTCAGATCATCCTGGACTCGCTG
CTCCTCTTTGGCCAGTGCTCATCCACACCAATGTCGGAGGCCTTCCACCCTACGGTGACTGGTG
AGAGCCTGTATGGGGACTTCGCGGAGGCCTTGGAGCACCTGCAGCACCGCGTCATTGCCACACG
CAGCCCCGAGGAGATCCGAGGTGGCGGCCTCCTCAAATACTGCCACCTCCTGGTACGGGGTTTC
CGGCCAAGGCCCAGCACTGATGTTCGCGCCCTACAGAGATATATGTGTTCCCGTTTCTTCATCG
ACTTTCCAGACCCGGTGGAACAGAGGCGCATTCTGGAGCGCTACCTGGAGGCCCACTTCGGCGG
AGCAGAAGCAGCCCGCCGGTATGCTTGCCTTGTGACACTGCACCGGGTGGTCAACGAGAGCACA
GTGTGCCTCATGAGCCACGAGCGCCGCCAGACCCTGGACCTTATTACCATGCTAGCCCTCCAGG
CACTAGCGGAGCAGGGCCCTGCTGCCATGGCTGCCCTGGCCTGGCGACGTCCTGGCTCAGATGG
GGTTGTACCAGCCACCGTTAATTACTATGTGACCCCCATGCAGCCTCTGCTGCCCCGCGCTCAC
TCCTATCCTACCTGGCTGCCTTGCAACTGACTCTGATCCTGGCCAGAAGGGAACGAGCTTCCTG
GGTGGGGTGGGGTCATCAGGTATGTGTTGAGGATGGAACCAGACACAGGCCACCTGTGCCAGCT
GGCCCGGCACTATAGGGTTGGGCCTTCGAACAGACCAGATTTTCCTGCACTAGGCCCCTGTGGA
CTTAAAGCCAAGTCAGGGTTCTTGACAGAAGGTCCCCTTGGTCATCACACTACACTCTTGGACC
TGCATAACTGTGGGGACACAGAGGATACTTGCCTTGAGAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101377	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58864	(Get FASTA)	NCBI Sequence Viewer
	B0BNK8	(Get FASTA)	NCBI Sequence Viewer
	EDL80668	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070098.1
	ENSRNOP00000098830

RefSeq Acc Id:

NP_001101377 ⟸ NM_001107907

- UniProtKB:

B0BNK8 (UniProtKB/Swiss-Prot), A0A8I6GKN3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMPSESGDESLEQPAAQVGTGAASAVATAGAAGGGPDLEASSASLGRHQSRLSWPQVKRLDALL
KEPIPIHGRGNFPTLSVQPQQIVQVVRSSLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDL
VFQMDLQSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDLDRWSLISL
SNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFAE
ALEHLQHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDPVEQR
RILERYLEAHFGGAEAARRYACLVTLHRVVNESTVCLMSHERRQTLDLITMLALQALAEQGPAA
MAALAWRRPGSDGVVPATVNYYVTPMQPLLPRAHSYPTWLPCN

hide sequence

Ensembl Acc Id:

ENSRNOP00000070098 ⟸ ENSRNOT00000086144

Ensembl Acc Id:

ENSRNOP00000098830 ⟸ ENSRNOT00000166946

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNK8-F1-model_v2	AlphaFold	B0BNK8	1-427	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694113

Promoter ID:

EPDNEW_R4638

Type:

single initiation site

Name:

Fam46b_1

Description:

family with sequence similarity 46, member B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	151,692,056 - 151,692,116	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308967	AgrOrtholog
BioCyc Gene	G2FUF-39634	BioCyc
Ensembl Genes	ENSRNOG00000029763	Ensembl
	ENSRNOG00000056153	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000074445	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000086144.2	UniProtKB/Swiss-Prot
	ENSRNOT00000166946	ENTREZGENE
IMAGE_CLONE	IMAGE:7935820	IMAGE-MGC_LOAD
InterPro	TET5	UniProtKB/Swiss-Prot
KEGG Report	rno:313019	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:188454	IMAGE-MGC_LOAD
NCBI Gene	313019	ENTREZGENE
PANTHER	PTHR12974	UniProtKB/Swiss-Prot
	TERMINAL NUCLEOTIDYLTRANSFERASE 5B	UniProtKB/Swiss-Prot
Pfam	NTP_transf_7	UniProtKB/Swiss-Prot
PhenoGen	Tent5b	PhenoGen
RatGTEx	ENSRNOG00000029763	RatGTEx
	ENSRNOG00000056153	RatGTEx
	ENSRNOG00000074445	RatGTEx
SMART	DUF1693	UniProtKB/Swiss-Prot
UniProt	A0A8I6GKN3	ENTREZGENE, UniProtKB/TrEMBL
	B0BNK8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-04-30	Tent5b	terminal nucleotidyltransferase 5B	Fam46b	family with sequence similarity 46, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam46b	family with sequence similarity 46, member B	RGD1308967_predicted	similar to hypothetical protein MGC16491 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308967_predicted	similar to hypothetical protein MGC16491 (predicted)	LOC313019_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC313019_predicted	similar to hypothetical protein MGC16491 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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