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Gene: Cobll1 (cordon-bleu WH2 repeat protein-like 1) Rattus norvegicus

Analyze

Symbol:

Cobll1

Name:

cordon-bleu WH2 repeat protein-like 1

RGD ID:

1308954

Description:

Predicted to enable actin monomer binding activity. Predicted to be located in cell cortex and membrane. Orthologous to human COBLL1 (cordon-bleu WH2 repeat protein like 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cobl-like 1; cordon-bleu protein-like 1; LOC311088

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	70,161,372 - 70,323,460 (-)	Ensembl				GRCr8
mRatBN7.2	3	49,753,260 - 49,915,168 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	49,753,262 - 49,915,194 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	51,137,104 - 51,298,956 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	51,137,076 - 51,297,852 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	57,773,838 - 57,935,923 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	47,024,613 - 47,035,010 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	49,357,547 - 49,518,074 (-)	NCBI		Celera
RGSC_v3.1	3	46,921,142 - 47,082,351 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cocaine-Related Disorders (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

Myocardial Reperfusion Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

ciglitazone (ISO)

ciguatoxin CTX1B (ISO)

clorgyline (ISO)

cobalt dichloride (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

methapyrilene (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

propiconazole (ISO)

quercetin (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cell cortex (IEA)

membrane (IEA)

Molecular Function

actin monomer binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Histone arginine methylation in cocaine action in the nucleus accumbens.	Damez-Werno DM, etal., Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9623-8. doi: 10.1073/pnas.1605045113. Epub 2016 Aug 9.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19056867	PMID:21873635	PMID:25468996	PMID:34355838

Genomics

Comparative Map Data

Cobll1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	70,161,372 - 70,323,460 (-)	Ensembl				GRCr8
mRatBN7.2	3	49,753,260 - 49,915,168 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	49,753,262 - 49,915,194 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	51,137,104 - 51,298,956 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	51,137,076 - 51,297,852 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	57,773,838 - 57,935,923 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	47,024,613 - 47,035,010 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	49,357,547 - 49,518,074 (-)	NCBI		Celera
RGSC_v3.1	3	46,921,142 - 47,082,351 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

COBLL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	164,657,931 - 164,842,076 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	164,653,624 - 164,843,679 (-)	Ensembl			hg38	GRCh38
GRCh37	2	165,514,441 - 165,698,586 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	165,249,502 - 165,406,174 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	165,366,845 - 165,407,024	NCBI
Celera	2	159,151,901 - 159,308,589 (-)	NCBI		Celera
Cytogenetic Map	2	q24.3	NCBI
HuRef	2	157,419,183 - 157,581,188 (-)	NCBI		HuRef
CHM1_1	2	165,542,608 - 165,704,546 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	165,115,257 - 165,299,434 (-)	NCBI		T2T-CHM13v2.0

Cobll1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	64,918,683 - 65,069,742 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	64,918,683 - 65,069,747 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	65,088,339 - 65,239,398 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	65,088,339 - 65,239,403 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	64,926,396 - 65,076,683 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	64,890,151 - 65,039,465 (-)	NCBI		MGSCv36	mm8
Celera	2	66,759,063 - 66,910,162 (-)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	38.35	NCBI

Cobll1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	9,340,716 - 9,404,308 (+)	Ensembl
ChiLan1.0	NW_004955449	9,340,716 - 9,400,049 (+)	NCBI	ChiLan1.0	ChiLan1.0

COBLL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	67,308,964 - 67,502,711 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	67,322,046 - 67,517,629 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	51,932,252 - 52,117,506 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	169,316,283 - 169,477,690 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	169,322,029 - 169,477,690 (-)	Ensembl			panPan2	panpan1.1

COBLL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	9,885,781 - 10,045,104 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	9,886,820 - 10,083,395 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	10,030,096 - 10,075,683 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	10,017,993 - 10,177,125 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	10,017,995 - 10,215,824 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	10,028,871 - 10,187,392 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	10,071,301 - 10,230,170 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	10,185,057 - 10,343,954 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cobll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	127,042,607 - 127,194,114 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	14,424,145 - 14,575,121 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	14,424,538 - 14,575,228 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COBLL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	71,343,751 - 71,498,205 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	71,343,749 - 71,498,495 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	79,411,838 - 79,435,063 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COBLL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	50,146,038 - 50,312,870 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	50,143,971 - 50,311,767 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	149,194,208 - 149,356,530 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cobll1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	572,029 - 733,571 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	571,448 - 734,814 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cobll1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	42,576,397 - 42,645,151 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cobll1
1116 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	326
Count of miRNA genes:	110
Interacting mature miRNAs:	138
Transcripts:	ENSRNOT00000001607, ENSRNOT00000067056
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	58601291	71157804	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	59119402	70710963	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH133635

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	49,753,292 - 49,753,472 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	51,137,137 - 51,137,316	NCBI	Rnor6.0
Rnor_5.0	3	57,773,871 - 57,774,050	UniSTS	Rnor5.0
RGSC_v3.4	3	47,023,687 - 47,023,866	UniSTS	RGSC3.4
Celera	3	49,357,580 - 49,357,759	UniSTS
RH 3.4 Map	3	625.8	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH135282

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	49,820,366 - 49,820,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	51,204,104 - 51,204,307	NCBI	Rnor6.0
Rnor_5.0	3	57,840,838 - 57,841,041	UniSTS	Rnor5.0
RGSC_v3.4	3	47,090,754 - 47,090,957	UniSTS	RGSC3.4
Celera	3	49,424,664 - 49,424,867	UniSTS
RH 3.4 Map	3	608.31	UniSTS
Cytogenetic Map	3	q21	UniSTS

AW529800

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	49,913,011 - 49,913,173 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	51,296,572 - 51,296,733	NCBI	Rnor6.0
Rnor_5.0	3	57,933,305 - 57,933,466	UniSTS	Rnor5.0
RGSC_v3.4	3	47,184,678 - 47,184,839	UniSTS	RGSC3.4
Celera	3	49,516,939 - 49,517,100	UniSTS
RH 3.4 Map	3	626.4	UniSTS
Cytogenetic Map	3	q21	UniSTS

AU048427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	70,220,104 - 70,220,274 (+)	Marker Load Pipeline
mRatBN7.2	3	49,811,906 - 49,812,170 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	49,812,000 - 49,812,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	51,195,738 - 51,195,907	NCBI	Rnor6.0
Rnor_6.0	3	51,195,604 - 51,195,907	NCBI	Rnor6.0
Rnor_5.0	3	57,832,472 - 57,832,641	UniSTS	Rnor5.0
Rnor_5.0	3	57,832,338 - 57,832,641	UniSTS	Rnor5.0
RGSC_v3.4	3	47,082,388 - 47,082,557	UniSTS	RGSC3.4
Celera	3	49,416,298 - 49,416,467	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	91	59	6	355	191	11	141	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001607 ⟹ ENSRNOP00000001607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,323,460 (-)	Ensembl
mRatBN7.2 Ensembl	3	49,753,262 - 49,915,194 (-)	Ensembl
Rnor_6.0 Ensembl	3	51,137,076 - 51,297,852 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104492 ⟹ ENSRNOP00000078543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,322,586 (-)	Ensembl
mRatBN7.2 Ensembl	3	49,753,262 - 49,915,194 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121373 ⟹ ENSRNOP00000110055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,271,977 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128150 ⟹ ENSRNOP00000102092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,237,521 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133172 ⟹ ENSRNOP00000109352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,258,234 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155711 ⟹ ENSRNOP00000101496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,319,830 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156132 ⟹ ENSRNOP00000110145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,319,830 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168612 ⟹ ENSRNOP00000105107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,313,112 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172912 ⟹ ENSRNOP00000103766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	70,161,372 - 70,236,605 (-)	Ensembl

RefSeq Acc Id:

NM_001427223 ⟹ NP_001414152

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,372 - 70,322,586 (-)	NCBI

RefSeq Acc Id:

XM_006234304 ⟹ XP_006234366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,915,165 (-)	NCBI
Rnor_6.0	3	51,137,104 - 51,298,956 (-)	NCBI
Rnor_5.0	3	57,773,838 - 57,935,923 (-)	NCBI

Sequence:

show sequence

AAACCTGCCAGGGATTAGAAAGATCACAATGTCAGAGGTGCCATTTACAGGCTAGCAACCGCAG
GGGTCAGTAAGGTTAAAAAGAAAATCCAGCACTTGGAAGGTCAGACTGCAGGTAGTCAATCAGC
AGAGCTCGTTCCACGAGCTCTCCTCACTTCCGCTACAGCTTGGGCCCTCCCTGGGGTTTTGCTG
GCCAGGTATCCTCCCTGTCCGCCCACTGTCCCTCTTGGGTTCGCGGGGCTTCCCAAAGCTATGC
TCTGGCAGTGGGGGCTGGAACGAGCCGCCTAGACGATTCCTGTCCACCGGTCTCCCCCGCGGTA
CCCTAAAGCCGCGTGCCCCGGGGAGGGGTGCGGGGTGGGGTAGGAAATTCCTCCTCGCTCCACG
TCCCCGCCCGCTCGCCCTATCCGTCCCCTCTCCGGCTGGCTGCCCTGCTCGCTCCGATGCCGAC
CTCGTCACCTTCACTTCTGCAGGGCGAGTTGGCCGAGGCGACTGCGAGCTCGGGACTCCCGGCA
GGGCTATGGGGCAGGCAGTGACGCGCCGCCTCCGAGCTCGAGCCCGCGCCGCGGCCAGCAGCGC
GATGGACCGCAGTGCCCGGGATCCCGTACCCCGCAGCGCGCCTCGCACCCCCGCCACGCAGTCT
GCCGGCTCTGCAGGGAGGAAAACAAAAGCGAAGGCACCTCTCCCCCCTGCTGAGATGAAGGGCA
TGGATGTCTCTTCGGCTGAGGATCCTGTAGAATCTATTCCTGTCTCCACAGAGCAACATGACAA
TATGATAGATAAAGACATCGAACTCTCGGTGGTCCTGCCTGGAGATGTTCTCAAATCTACTACA
GTTCATGGCAGTAAGCCCATGATGGACTTGCTGGTGTTCCTCTGTGCACAGTATCACTTAAACC
CATCAAGTCACACAATCAACTTGCTGTCTGCTGAAGAGAATCTCATCAAATTTAAGCCAAACAC
ACCAATAGGAATGCTGGAGGTAGAAAAGGTCATTTTAAAGCCGAAATCTCTGGATAAGAAAAAA
CCTACACCTATAATCCCAGAGAAAACTGTGAGAGTAGTGATCAATTTTAAGAAGACACAGAAGA
CCATAGTGAGAGTTAGTCCCCACTCACCGCTTCAAGACCTTGCTCCCATTATATGCAGTAAATG
TGAGTTTGATCCATTGCATACAGTGTTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACCTC
ACAAAGTCTCTTAATGACCTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAGAGTCCT
GCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTT
CCAACGCAGTAAGAAAAAGCGAGAGCAAACTGCCAGCGCTCCTGCGACCCCACTAGTGAGCAAG
CACCGTCCTTCTTTTACGAGGTCCAACACCATTTCCAAACCCTACATTTCCAACACGCTGCCCT
CTGATGCACCCAAGAAGAGGCGTGCCCCGCTGCCACCCATGCCCACATCCCAGGGTGCTGCTCA
AGGCCAGGAGAGGCGCGCTTCTTGTGTGGAGAGATCCACCAGTGTGGACGACACGGATAAGAGT
TCCTCTGAAGGATTCATGGTGAGGACAGGATCACTGCAACTCAGTGGCAGTACATCAGTAGGAA
CTTCATCTCTTAAGAGAACGAAGCGAAAAGCACCTGCCCCACCTTCGAAACCCTCCCTGACTGA
GACCGATGAAGGGAGCTCTGCGGCTGCTCATGGCCTACCTTTGGAGGATGGGATTGTTCCAGAC
AGCATTTCAGAAGTGAGCTCTCCTGAGGGTATGTCCAGCCCAGCTGGCGTAAGCTCGGATTACA
GTCTTGAAGAGATAGATGAAAAGGAAGAACTGATGGAGGCGTCTAAAGATCAGGCTGGAAGTGT
GAAGTCGCCTACCATTGCTTCAGCATCTACGGATATGATAATTACAGCGGAGAATGATCCTGAT
TCAGCCCTCAGCATCAGTGATGGAGAGACCTCTCCAGGCTCTAAGGGAAACACTCCAGAAGGCA
GAAACCCAGAGGGGCAAGGGCCACATCATCCTGTTGAGTGCCTTATAGGCAATGAGAACAATGT
ATCTGACAGTATAAAAGACTTGAAGACACTGAGCCCAAACCAAGAGAGTGTAATTCAAAATGAA
GTCGTGGTCTGTGCTACAAGCACAGATTACGTGAAAAACAGACCAAGGGAAATGGAAGCCACCA
TAGAAGGAGAGGCACAGAAGAAAGTCGGGGATGTGGAAGCTGAAAGATTGTCAGGCTCTCCTGC
AGGTAGAATGGATGATGTTCAAAGTTCAAGGGAAAATCATCTAACAGCATCACCAGGACCAGAT
CAAAAATCGAATCAACCACGTGTAGAGAAGACAAAAATGCAGGATGCAGCAATTCAGGCCACCC
CTGCCTGCAGCACTTTTGATGGGAATCACGAAGCCCATAATTCACCTGACCTCAGGGTTGATGA
GACTGCACAGACTTTGGGTAGCAGCACATCAACTCAGCACTCCTCTGCAAGCTTCCAGGATTCT
GTAAATGCCTCAAGAGAAGTCAGGAGTCAGGGCACCTCAACCTATGTACAAGATAGACTCCCTG
TGAAAGAGGCAGCTTGTACTTATGGGAACAATGACGCTTTATCTCCTATAGATGGAAGTGGTAA
GAATCCGGCTGCTTCTTCCCTAAAGAACTTTCCACTTTATAGGCAAGACAACCACCCCAAGCCA
AAACCTTCAAATGAAATTACGAGAGAGTACATACCTAAAATTGGAATGACTACTTACAAAATAG
TGCCTCCGAAATCCCTGGAAGTGGTGAAAGACTGGGACTCAGAAGCAGCGGGGAAGAAAGATAA
CCAAAAGACGCTTGCTGTAGCACAGAAGCATGCGATTGAGACTATGACAGAGACTGCCGTGCAA
GCAGAAGCCCTTGTCACGTCTAAAAACTCACAGCAGCCTCAGCCTGACCGTACACCAAAGCCCA
GCTCAGGAACAGAGCATCCTTTGCACAGGACTGTGAGCTCACCAGTTGGTACCGAGATGAACCC
TCCCAAGCCTCCCAGGATGACTACGGACACTGGCACCATTCCTTTTGCACCGAATTTGGAAGAT
ATTAACAATATTTTGGAGTCAAAATTCAGATCCCGAGCTTCGAATCCCCAGGCCAAACCAAGTT
CATTCTTTTTGCAGATGCAAAAGAGAGCCTCAGGCCACTATGTGACATCTGCAGCTGCTAAGAG
CGTCCACACTGCCCCTGGGCCTACCCCTAAAGAACCAACAATCAAGGAGGTGCAAAGGGACCCA
CAGCTTCCTCCAGAGCAGTGTCTTTCTCCCTTGAGTGAAAGGACTCACTCTGCTCCTCTGCCCA
ATATTTCAAAAGCTGATGATAATAGAATTCAGAAGCCTGCTGAGACTTCTCCTCCTCCTGTAGC
TCCCAAGCCTATGGCTCTTCCTGCCGAGACCTCTCCTCCTGCTGTAGCTCCCAAGCCTATGGCT
TTTCCTGCCGAGACCTCTCTTCCTCCTGTATCTCCCAAGCCTATGGCTCTTCCTACAGAGGCAT
CTTCTTCTCCTATATCTCCCAAGCCTATGGCTCCTCCTGCTGAGGCCTCAATTCCTCCTGTAGT
TCCCAAGCCTATGGCTCCTCCTGCCGAGGCCTCTCCTCTTCCTGTAGCTCCTAAGCCTATGGCT
TTTCCTGCCGAGACCTCTCTTCCTCCTGTAGCTCCCAAGCCTATGGCTCTTCCTACAGAGGCCT
CTCCTCCTCCTGTAGCTCCCAAGCCTTTGGCTCTTCCTGGTAGTCAGGGAGCCTCACTAAACCT
GAAGACCTTGAAAACATTCGGGGCCCCGAGACCATACAACAGTTCTGCCCCCTCACCCTTTGCC
CTTGCTGTGGTGAAAAGGTCACAGTCGTTCAGCAAGGCATCTCCAGAGTCACCCAGTGAGGACT
CCTCTGCCCAGCCTCCAGCTGCCATACAGGATGGAAAGACACAAACAGTAAATCAGCCTACAGT
GGGCTCCCAACATGATGGTGTTGATAAGCAAAATAAACCTGTTCAGAATGAGCACAGTTCTCAG
AGGCTGACTCCCGCTGATGGCCCGTCATCGTTCACCCTTCAGAGACAGAGTTCTCTCAACTTCC
AGAGCTCTGACCCGGAGCACATCCGGCAGAGCTTGCTCACCGCAATCCGGTCTGGAGAGGCTGC
TGCCAAGTTGAAGAGAGTTACTGTTCCGTCAAATAGAATATCTGTGAATGGGAAGTCGGGGCTC
AGCCAGCCCATGTCCATTGATGCCCAGGACAGTTGCTGACATCACCCTGCTGTGACGCACTTCA
CCAACCAGCTTTCTGCCTACAAGAAATACTGACAAATATATATTCAGATGTACATTAATATATA
AATCTGTTCAAGAATAAACATTTGTATTATGGATTTAATGCCAAAAGAAAAAAATGAGAATTTA
TAATTTATAATACTTTTTGGCCTTTTTGTTATAGCTAAATACTGCTGCTTTAGAAATGTTAAAC
AAGGTGTCAATGACTTGTTTTTCCAATGATGAGTAATCACTGCTTATGTTTTTTTTTTCTTACG
GACACAGTGTGCACCATGAAACAAAGGTGTAAATTGAGATTTATAGATATATTGTATGACACAG
AAACAGGCAAGCACAGACTAACATTTACTGCCTCAGCATTAGGCTATAATTAGAAAAAGAAATT
ATAGTACGGCCTTTGTTGCTGAAAGATGTGGAAGACTAGTAAAACAAATAAATAATGTTCAGTT
ATTTTTACTGAAGAGTCACTAGGAGACTTATTTTATGTCTTTTTGAATTACAAGTGAGTGTCGG
ATCTGTAGGAAACAACTGAGTATTTTTAAATAGAACACTTTAACCTTTAGACGTCAAATTGCAC
AAGACAACTTTAAGATATTTTCTGTATATAATTATGATGTTGTTACACAGATATTACATATTTT
CTAATGCCAGAGGCCTTAAAATGTTCCTATGAAAATGTTGATACATTGTGACAGCTATTTCACT
TTTGGTATAGGGAAGAATAGGGTTAGTTTATGTGCACATTCAAAACCTCGAAGTTAAACATATG
CAAAATCCCAATTTTAATTTAAAAAAAATGCTAAATTAGTCACTTATGTAGCTCAGATGCTAGT
CACCTAAATAATAATATATATTTTCCTGAATGCCAAAATGGTTGAGAGAAACAGTACTTGCTGT
GTTGGCTTACAGTGGTCTAGAGGTTTAGAACATGTTAGTGTCCTGAACTTCCTTCAGAATTTCA
TTCCTCTTTTATTCAAAAAACTACACAATCAGCCTGACACTGTTTGAACTCTTACTAAAGCTAC
TGGATTATCTGTCATCTTGACACATGTGAACCTTTTTCCGTTTAATAAAAGCAAGTTATATATT
TGAA

hide sequence

RefSeq Acc Id:

XM_039106329 ⟹ XP_038962257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,915,168 (-)	NCBI

RefSeq Acc Id:

XM_039106330 ⟹ XP_038962258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,915,168 (-)	NCBI

RefSeq Acc Id:

XM_039106332 ⟹ XP_038962260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,915,166 (-)	NCBI

RefSeq Acc Id:

XM_039106333 ⟹ XP_038962261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,915,167 (-)	NCBI

RefSeq Acc Id:

XM_039106337 ⟹ XP_038962265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,316,703 (-)	NCBI
mRatBN7.2	3	49,753,260 - 49,913,216 (-)	NCBI

RefSeq Acc Id:

XM_063283617 ⟹ XP_063139687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,321,775 (-)	NCBI

RefSeq Acc Id:

XM_063283618 ⟹ XP_063139688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,321,775 (-)	NCBI

RefSeq Acc Id:

XM_063283619 ⟹ XP_063139689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,321,775 (-)	NCBI

RefSeq Acc Id:

XM_063283621 ⟹ XP_063139691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,321,775 (-)	NCBI

RefSeq Acc Id:

XM_063283622 ⟹ XP_063139692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,259,991 (-)	NCBI

RefSeq Acc Id:

XM_063283623 ⟹ XP_063139693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	70,161,369 - 70,324,844 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414152	(Get FASTA)	NCBI Sequence Viewer
	XP_006234366	(Get FASTA)	NCBI Sequence Viewer
	XP_038962257	(Get FASTA)	NCBI Sequence Viewer
	XP_038962258	(Get FASTA)	NCBI Sequence Viewer
	XP_038962260	(Get FASTA)	NCBI Sequence Viewer
	XP_038962261	(Get FASTA)	NCBI Sequence Viewer
	XP_038962265	(Get FASTA)	NCBI Sequence Viewer
	XP_063139687	(Get FASTA)	NCBI Sequence Viewer
	XP_063139688	(Get FASTA)	NCBI Sequence Viewer
	XP_063139689	(Get FASTA)	NCBI Sequence Viewer
	XP_063139691	(Get FASTA)	NCBI Sequence Viewer
	XP_063139692	(Get FASTA)	NCBI Sequence Viewer
	XP_063139693	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68937	(Get FASTA)	NCBI Sequence Viewer
	EDL79018	(Get FASTA)	NCBI Sequence Viewer
	EDL79019	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001607
	ENSRNOP00000001607.7
	ENSRNOP00000078543
	ENSRNOP00000078543.2
	ENSRNOP00000101496.1
	ENSRNOP00000102092.1
	ENSRNOP00000103766.1
	ENSRNOP00000105107.1
	ENSRNOP00000109352
	ENSRNOP00000109352.1
	ENSRNOP00000110055.1
	ENSRNOP00000110145
	ENSRNOP00000110145.1

RefSeq Acc Id:	XP_006234366 ⟸ XM_006234304
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZL13 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQAVTRRLRARARAAASSAMDRSARDPVPRSAPRTPATQSAGSAGRKTKAKAPLPPAEMKGMD VSSAEDPVESIPVSTEQHDNMIDKDIELSVVLPGDVLKSTTVHGSKPMMDLLVFLCAQYHLNPS SHTINLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTI VRVSPHSPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRESCQ ISHNPDIVKEKENKGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSD APKKRRAPLPPMPTSQGAAQGQERRASCVERSTSVDDTDKSSSEGFMVRTGSLQLSGSTSVGTS SLKRTKRKAPAPPSKPSLTETDEGSSAAAHGLPLEDGIVPDSISEVSSPEGMSSPAGVSSDYSL EEIDEKEELMEASKDQAGSVKSPTIASASTDMIITAENDPDSALSISDGETSPGSKGNTPEGRN PEGQGPHHPVECLIGNENNVSDSIKDLKTLSPNQESVIQNEVVVCATSTDYVKNRPREMEATIE GEAQKKVGDVEAERLSGSPAGRMDDVQSSRENHLTASPGPDQKSNQPRVEKTKMQDAAIQATPA CSTFDGNHEAHNSPDLRVDETAQTLGSSTSTQHSSASFQDSVNASREVRSQGTSTYVQDRLPVK EAACTYGNNDALSPIDGSGKNPAASSLKNFPLYRQDNHPKPKPSNEITREYIPKIGMTTYKIVP PKSLEVVKDWDSEAAGKKDNQKTLAVAQKHAIETMTETAVQAEALVTSKNSQQPQPDRTPKPSS GTEHPLHRTVSSPVGTEMNPPKPPRMTTDTGTIPFAPNLEDINNILESKFRSRASNPQAKPSSF FLQMQKRASGHYVTSAAAKSVHTAPGPTPKEPTIKEVQRDPQLPPEQCLSPLSERTHSAPLPNI SKADDNRIQKPAETSPPPVAPKPMALPAETSPPAVAPKPMAFPAETSLPPVSPKPMALPTEASS SPISPKPMAPPAEASIPPVVPKPMAPPAEASPLPVAPKPMAFPAETSLPPVAPKPMALPTEASP PPVAPKPLALPGSQGASLNLKTLKTFGAPRPYNSSAPSPFALAVVKRSQSFSKASPESPSEDSS AQPPAAIQDGKTQTVNQPTVGSQHDGVDKQNKPVQNEHSSQRLTPADGPSSFTLQRQSSLNFQS SDPEHIRQSLLTAIRSGEAAAKLKRVTVPSNRISVNGKSGLSQPMSIDAQDSC hide sequence

Ensembl Acc Id:

ENSRNOP00000001607 ⟸ ENSRNOT00000001607

RefSeq Acc Id:	XP_038962258 ⟸ XM_039106330
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038962257 ⟸ XM_039106329
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038962261 ⟸ XM_039106333
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038962260 ⟸ XM_039106332
- Peptide Label:	isoform X7
- UniProtKB:	F1M124 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962265 ⟸ XM_039106337
- Peptide Label:	isoform X12

Ensembl Acc Id:

ENSRNOP00000078543 ⟸ ENSRNOT00000104492

RefSeq Acc Id:	XP_063139693 ⟸ XM_063283623
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063139688 ⟸ XM_063283618
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139691 ⟸ XM_063283621
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063139689 ⟸ XM_063283619
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063139687 ⟸ XM_063283617
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139692 ⟸ XM_063283622
- Peptide Label:	isoform X8

RefSeq Acc Id:

NP_001414152 ⟸ NM_001427223

Ensembl Acc Id:

ENSRNOP00000103766 ⟸ ENSRNOT00000172912

Ensembl Acc Id:

ENSRNOP00000110055 ⟸ ENSRNOT00000121373

Ensembl Acc Id:

ENSRNOP00000102092 ⟸ ENSRNOT00000128150

Ensembl Acc Id:

ENSRNOP00000101496 ⟸ ENSRNOT00000155711

Ensembl Acc Id:

ENSRNOP00000109352 ⟸ ENSRNOT00000133172

Ensembl Acc Id:

ENSRNOP00000110145 ⟸ ENSRNOT00000156132

Ensembl Acc Id:

ENSRNOP00000105107 ⟸ ENSRNOT00000168612

Protein Domains

Cordon-bleu ubiquitin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M124-F1-model_v2	AlphaFold	F1M124	1-1223	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692105

Promoter ID:

EPDNEW_R2628

Type:

multiple initiation site

Name:

Cobll1_1

Description:

cordon-bleu WH2 repeat protein-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	51,297,922 - 51,297,982	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308954	AgrOrtholog
BioCyc Gene	G2FUF-49564	BioCyc
Ensembl Genes	ENSRNOG00000027016	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001607	ENTREZGENE
	ENSRNOT00000001607.8	UniProtKB/TrEMBL
	ENSRNOT00000104492	ENTREZGENE
	ENSRNOT00000104492.2	UniProtKB/TrEMBL
	ENSRNOT00000121373.1	UniProtKB/TrEMBL
	ENSRNOT00000128150.1	UniProtKB/TrEMBL
	ENSRNOT00000133172	ENTREZGENE
	ENSRNOT00000133172.1	UniProtKB/TrEMBL
	ENSRNOT00000155711.1	UniProtKB/TrEMBL
	ENSRNOT00000156132	ENTREZGENE
	ENSRNOT00000156132.1	UniProtKB/TrEMBL
	ENSRNOT00000168612.1	UniProtKB/TrEMBL
	ENSRNOT00000172912.1	UniProtKB/TrEMBL
Gene3D-CATH	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	COBL-like	UniProtKB/TrEMBL
	Cordon-bleu_domain	UniProtKB/TrEMBL
NCBI Gene	311088	ENTREZGENE
PANTHER	CORDON-BLEU PROTEIN-LIKE 1	UniProtKB/TrEMBL
	PTHR21557	UniProtKB/TrEMBL
Pfam	Cobl	UniProtKB/TrEMBL
PhenoGen	Cobll1	PhenoGen
RatGTEx	ENSRNOG00000027016	RatGTEx
UniProt	A0A8I5ZL13	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LFQ7_RAT	UniProtKB/TrEMBL
	A0ABK0LG53_RAT	UniProtKB/TrEMBL
	A0ABK0LGU7_RAT	UniProtKB/TrEMBL
	A0ABK0LJT8_RAT	UniProtKB/TrEMBL
	A0ABK0LSQ8_RAT	UniProtKB/TrEMBL
	A0ABK0LTG4_RAT	UniProtKB/TrEMBL
	A0ABK0LX00_RAT	UniProtKB/TrEMBL
	B5DF59_RAT	UniProtKB/TrEMBL
	F1M124	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-12-18	Cobll1	cordon-bleu WH2 repeat protein-like 1	Cobll1	Cobl-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cobll1	Cobl-like 1	Cobll1_predicted	Cobl-like 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cobll1_predicted	Cobl-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD