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Gene: Pogk (pogo transposable element derived with KRAB domain) Rattus norvegicus

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Symbol:

Pogk

Name:

pogo transposable element derived with KRAB domain

RGD ID:

1308951

Description:

Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human POGK (pogo transposable element derived with KRAB domain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304941; pogo transposable element with KRAB domain

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	81,180,410 - 81,196,326 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	81,180,410 - 81,196,326 (-)	Ensembl				GRCr8
mRatBN7.2	13	78,647,447 - 78,663,363 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	78,647,447 - 78,663,363 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	81,265,765 - 81,281,700 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	82,579,317 - 82,595,255 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,818,107 - 79,834,045 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	84,603,126 - 84,619,042 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	84,603,126 - 84,619,042 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	89,463,024 - 89,493,305 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	82,125,644 - 82,141,560 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	78,356,003 - 78,371,918 (-)	NCBI		Celera
RGSC_v3.1	13	82,144,844 - 82,175,821 (-)	NCBI
Cytogenetic Map	13	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

furan (EXP)

lead(0) (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

DNA binding (IBA,IEA)

nucleic acid binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Pogk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	81,180,410 - 81,196,326 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	81,180,410 - 81,196,326 (-)	Ensembl				GRCr8
mRatBN7.2	13	78,647,447 - 78,663,363 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	78,647,447 - 78,663,363 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	81,265,765 - 81,281,700 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	82,579,317 - 82,595,255 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,818,107 - 79,834,045 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	84,603,126 - 84,619,042 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	84,603,126 - 84,619,042 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	89,463,024 - 89,493,305 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	82,125,644 - 82,141,560 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	78,356,003 - 78,371,918 (-)	NCBI		Celera
RGSC_v3.1	13	82,144,844 - 82,175,821 (-)	NCBI
Cytogenetic Map	13	q23	NCBI

POGK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	166,839,475 - 166,856,359 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	166,839,314 - 166,860,347 (+)	Ensembl			hg38	GRCh38
GRCh37	1	166,808,712 - 166,825,596 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	165,075,348 - 165,090,333 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	163,540,381 - 163,555,367	NCBI
Celera	1	139,913,857 - 139,928,842 (+)	NCBI		Celera
Cytogenetic Map	1	q24.1	NCBI
HuRef	1	138,055,893 - 138,070,761 (+)	NCBI		HuRef
CHM1_1	1	168,230,466 - 168,245,422 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	166,185,193 - 166,202,191 (+)	NCBI		T2T-CHM13v2.0

Pogk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	166,221,179 - 166,237,402 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	166,212,191 - 166,237,432 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	166,393,610 - 166,409,853 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	166,384,622 - 166,409,863 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	168,323,741 - 168,339,959 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	168,234,262 - 168,246,481 (-)	NCBI		MGSCv36	mm8
Celera	1	168,834,716 - 168,850,791 (-)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	73.75	NCBI

Pogk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	10,079,185 - 10,089,010 (-)	Ensembl
ChiLan1.0	NW_004955462	10,075,834 - 10,089,954 (-)	NCBI	ChiLan1.0	ChiLan1.0

POGK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,925,088 - 82,940,151 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	82,593,652 - 82,608,712 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	142,256,758 - 142,271,812 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,044,686 - 146,059,116 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,044,684 - 146,059,116 (+)	Ensembl			panPan2	panpan1.1

POGK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	31,531,633 - 31,546,694 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	31,532,831 - 31,547,283 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	31,070,269 - 31,085,241 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	31,353,482 - 31,368,462 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	31,353,483 - 31,368,302 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	31,191,198 - 31,206,171 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	31,223,446 - 31,238,595 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	31,461,970 - 31,476,933 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pogk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	101,199,309 - 101,211,917 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	19,046,058 - 19,058,680 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	19,046,058 - 19,058,654 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POGK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	84,189,004 - 84,204,723 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	84,188,993 - 84,204,869 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	91,903,989 - 91,911,093 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POGK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	62,178,214 - 62,193,356 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	62,177,847 - 62,193,247 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	63,914,977 - 63,930,451 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pogk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	4,905,577 - 4,914,847 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624826	4,904,790 - 4,919,136 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pogk
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	45,487,734 - 45,500,358 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pogk
99 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	827
Count of miRNA genes:	305
Interacting mature miRNAs:	410
Transcripts:	ENSRNOT00000045056
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH136996

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	78,647,225 - 78,647,420 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	84,602,905 - 84,603,099	NCBI	Rnor6.0
Rnor_5.0	13	89,477,156 - 89,477,350	UniSTS	Rnor5.0
RGSC_v3.4	13	82,125,423 - 82,125,617	UniSTS	RGSC3.4
Celera	13	78,355,782 - 78,355,976	UniSTS
Cytogenetic Map	13	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045056 ⟹ ENSRNOP00000051209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	81,180,410 - 81,196,326 (-)	Ensembl
mRatBN7.2 Ensembl	13	78,647,447 - 78,663,363 (-)	Ensembl
Rnor_6.0 Ensembl	13	84,603,126 - 84,619,042 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089827 ⟹ ENSRNOP00000072655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	81,190,008 - 81,196,326 (-)	Ensembl
mRatBN7.2 Ensembl	13	78,657,045 - 78,662,899 (-)	Ensembl
Rnor_6.0 Ensembl	13	84,607,940 - 84,619,023 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100051 ⟹ ENSRNOP00000088020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	81,180,410 - 81,195,884 (-)	Ensembl
mRatBN7.2 Ensembl	13	78,647,447 - 78,662,899 (-)	Ensembl

RefSeq Acc Id:

NM_001107194 ⟹ NP_001100664

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	81,180,410 - 81,196,326 (-)	NCBI
mRatBN7.2	13	78,647,447 - 78,663,363 (-)	NCBI
Rnor_6.0	13	84,603,126 - 84,619,042 (-)	NCBI
Rnor_5.0	13	89,463,024 - 89,493,305 (-)	NCBI
RGSC_v3.4	13	82,125,644 - 82,141,560 (-)	RGD
Celera	13	78,356,003 - 78,371,918 (-)	RGD

Sequence:

show sequence

GGCCGCGCTGGGGCGGCGGGAGCGGCGGAGCCGATGGCGCGGTGAATGCCGGGTCACAACCCTC
GTCGCCGCTTGCGGCGACGCCACCCGCTCGGCCGGGAAATGGAGTCCCGAGCCTACCCTCTAAA
TTTGACCCTGAAAGAAGAGCAAAAAGAAGATGAGGTTGAGATCCAGGAATTGGAGGATGGTCCC
GTAGAGATGCAGAAAGTGCAAATCTGCTCGGAAGGCACGTGGGTACCAGCCCTATTTGATGAGG
TGGCCATATATTTTTCGGATGAGGAGTGGGAAGTTCTGACAGAGCAACAAAAAGCCCTCTACCG
GGAAGTCATGAGGATGAATTATGAGACTGTCCTGTCCCTGGAATTCCCATTCCCCAAGCCAGAT
ATGATCAATCGGTTGGAAAGGGAAGAGGAGTGTCCTGAATCTGATGAGTGGCGGCTCCAGGGAG
TAACCTTTGCAGAAAATGAAGAATCTGATTTTAGGACTCCAGATTGGGCCAACCCGATGAATGC
CACCTCCCATTTTCCTCAACCTCAGCACTTCAACAGCTTTGGGCTGCGTCTGCCGCAGGACATC
ACTGAACTGCCTGAGTGGAGTGAGGGGTACCCCTTCTATATGGCCATGGGCTTCCCTGGGTATG
ACCTCTCAGCTGACGACTTGGCGAGCAAGTTTCAGTTCAGTCGCGGCATGCGCCGCAGTTACGA
TGCGGGGTTCAAGCTGATGGTGGTGGAGCACGCTGAGAGTACCAACAACTGTCAGGCTGCCAAG
CAGTTCGGGGTGTTGGAAAAGAATGTCCGAGACTGGCGCAAAGTGAAGCCACAGCTCCAAAACG
CCCATGCCATGCGGCGGGCATTCCGAGGCCCCAAGAATGGAAGATTTGCTCTGGTAGACCAGCG
GGTGGCTGAGTATGTCAGATACATGCAGGCCAAAGGGGACCCCATCACCAGGGAGGCAATGCAG
TTGAAAGCTCTTGAAATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCAAGTCTGG
GCTGGTGTCGGAGGATGATGAGAAGGTATGACCTATCCCTGAGGCATAAAGTGCCAGTTCCTCA
GCACCTGGCCGAGGACCTGACTGAGAAGCTCGTCACTTACCAGCAGAGTGTGCTTGCTCTGCGC
CGGACACACGACTATGAGGTGGCACAGATGGGCAATGCAGATGAAACACCCATCTGCTTAGAAG
TGCCCTCTAGAGTGACTGTTGACAACCAGGGTGAAAAGCCCATCCTGGTCAAGACACCAGGCAG
GGAGAAACTGAGGATCACAGCCATGCTGGGGGTCTTGGCTGATGGGAGGAAGTTACCACCATAC
ATCATCTTGAGGGGGACATATATCCCCCCTGGGAAGTTTCCCAGTGGCATGGAAATCCGCTGCC
ACCGCTATGGATGGATGACTGAGGACTTGATGCAAGACTGGTTGGAAGTTGTGTGGAGACGGAG
AACTGGAGCTGTACCCAAACAACGAGGGATGCTGATCCTGAATGGCTTCCGGTGCCATGCCACC
GACTCTGTGAAGACTTCCATGGAGAGTATGAACACAGACATGGTGATTATCCCGGGGGGCCTGA
CCTCCCAGCTGCAGGTGCTGGATGTGGTTGTCTACAAGCCACTGAATGACAGTGTTCGGGCCCA
GTATTCCAACTGGCTTCTGGCTGGGAACCTGGCACTGAGCCCCACTGGAAATGCTAAGAAGCCA
CCGCTGGGCCTCTTCCTGGAGTGGATCATGGTTGCGTGGAATAGTATCTCAAGTGAATCAATTG
TCCAGGGGTTCAGAAAGTGCCACATCTCTAGCAACTTAGAGGAAGAAGGTGATGTCCTCTGGGA
AATCGAGGGCGAGTTGCCCAAAGAACGTGGTCATGAAGGTGTGGCTGAGGATGACTGAGAGGAT
TCAGGTAACTGGTCTGGAATAGATCCTCCGCCATCACTGCTGCCCCTGGTCGTAGCTAGCACTT
ACCTTTTGTCTGGCCCTTAGTTTTCTCTTTTCGAGTTCTCTTGAAATAGCCTGCCATGCAGCAG
GTCCTAGCACTTTCATTGTCAGAAACTGATTTAGATTGGGTTCTGTGGCCTGGATCCAGGAGTG
CTTTTATAATGGGTAACATGAACAAGGAACTGTCACAACACTTCACATGAGAGCAGTCCCACTG
CAAAGTTACTTGGGCCTCTAGACACAGTCTGACATTGTTTACTTCACAAAAAGGTTGTCTAAAG
AGACAACTTTCTTTTAAAATGCTGAACATTTAGGGCTGGGCTGTCTGCTTGAATTACTTAACAA
AGTTGCACTGCCTTTCACTGATCTGCAGGACCACCGCCCAGGGAGAGAACAAAGTCTGCCTTCA
GTTTGGTAACCTCTGGTCCTCAGCTCTGTGTCCTAGGGAGGTTATTATCATCTCCATGTCCACT
AGGGAGATGACAATATGTATTGTTTGCTTTTGTCTAGGGAATATTGAGAGTTTAAAAATATCAT
CTTGCTTTCATAGAACTTCAGTTATGGGGTGAGCCGTTAGAGGCAATTCCTGTTGTCAGCAGGA
ATCTGAAAGATGATGTTTTTAAACTGAATCTTTGAAGAGCTGCAGAGCTGGCCTAGCAGTTAAG
AGCATAACTGTTCCTGCACAGTTCGGTTCCCAGCACCCACATCCTACAGCTCATAACACCTGCA
ACTTGAGTTTGAGTCCAGTGACCTCTTTTAGCCTCCCTTTGACACCTGCAGTCACATGCACACT
TTCACACACAGAAACGCTGTATTTGTGTGACTAAAAACAGCCTTGGGCTAGAGAGATGGCTCAG
CAGTTAGGGATGCTTACCATTCATCCTTGCAGAGGACTGCATTTAGTTTCCAGCACCTGTATAA
CAGCTCACAACCAGCTGTAACTCCAGTTCCAGGGCATCCAATGCCCTCTTCTAGCCTCTGTGCT
CCTGCATATATATGGTGCAGACTCACACATAGACACATAAAATTAACCTAGCAAAGGCCCACAG
CCCCTATACACACACTTTGAGCAAACAGGAGAAGGACCAGAGCCAGAGTAAGGGACACATAGAA
AGCAGACAACTCGCCCCTTTCCCATTTTCCTTTTCAATCTACCTACATACTTTGAAAAGGAAAA
TGGCCAGCTCTTTAATAGAAAACCTAAAATTAGCATACCTTTCCTTTAAAAACGACTATTAGTT
TACATTTTACTTGTCTCCCTCAACCCCACCACGCAAGTGAAAGCTAATAGAAGTCTTTGCCCCG
TGAGCTGTATACGCACAGGCTCCTTAGTGGCACACACCCCCTTCCTGTCCTCATACCCTACACA
CTCTTTATAAAGCCCATGGATTCAGGCTCCCTCCTTTGCTGCTGACCACTCTGCTGCCCCATTG
GACAGCAGACTTTGAGTTGCAGTTGTTTTAGCCTTTCACATTCTTGCTTTCACCCTGTTAGAAA
ACACTTTCAATTTTCTAAGCAATTTACCACTCCAGGAACCTAGTCAAAGACTGCCAGAAAAGGA
AAGGGCAGAAGACCATGCCAAGCCACAGCTGTGCACCCAGGGACATTCCACATCAGCTTGAGCT
TCTGCTCCTCCAGATGCTACCATCTCTGTACAGCTGCTGGGGGAGGTAACGGAAACAGACATGA
AGAGATTCAGAAGACACAAGCATTAAACCACCTCCTGCTGTGGAATAGAACACTATTTTGTTAA
AAGACATCCAAAAGTCTGAACTGATGTCTACTTAGGTTCTCTCCGTTTTCCAGCAAATGGAACT
GTGATTGAAACAGTTGGGAGAAAAAGGAAAACTTGTAAGATGGCTGCAGAGAGACCAAAATGGG
CAGTGAGGCTCTCTGAGCATCCTTAGTCTGGAGAGCATGAACATCCCATCAAGACAGTCCTATC
TACTATACCCTGTCAGATGTCAGCCAAGTCTAGGACCCTTATGTTCAGCAACAAGATTAGAAAA
GAAACTTGGTGCCCCATTTCTTCTCTCAGAGCTGTCTCGATCTGCTCAGTCTAGAAGCCTATAA
ACCCAAATGAGCAAAGGTGTTTTCTGGAGAACACCTCTACAGCACCAAGATGTAATGTCACCAC
AGCTCTCATGTCCTTACTGTGGGAAAAAAACCTCAAGTGTGCGTGTGTGTGTATGTGTGTACAC
CTCCATAGGTGCTTCAGTAGAAGCTGTTTCCACACAGGTCAAGACTAAAGGAAAGCTTTTGTAG
AAACATGTCACACATGTACTCCTGTTACATGTCTACTCACTGAGGGAATGAGATGTTAATGAGC
AGGGGTGGGGGTCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGTTCTTCCAGAGGGCCT
GAGTTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCT
TCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATTTAAATAAAATCTTTAAAAAGCAACAAAC
AAAAAAACCAGTAGGACACTGGCTTGGTGCAGAAGATGGCTTTTCTGTAGGTAAACTAGGTTAG
GGTGCAAGATAAAGACTTTAAAATAAACGATGCTCTTACAGTCACCTTTCCAATCTGGTTGGCA
GCTAGACCTTTCTAGTGTCTTACATGATGACCTGTCACCTTTAATGAGGCAGCCCATGGTGCAC
AAGCCTTTGCTTTTCAGGCTGCCTGCAGGAGTCGACATTCCTGTCTACCCAGAACAAGGCCCAC
TGACTTGGAAAAAGGCAATGGGAGGAACTGGGCCTTAAGTCACAGCTGCTTTTAGACTCCAACC
ATACAAGAATAGGAGTCACTGACGACTTCTGCAATGGTAATTTGCATTCTCATTTAAGTCAACT
GCTAAGAAAAACATTCCTTCAACACTATGCTACAAAACTCCCACCAGAACCTCATAGGCAAAGC
CATTGCTAGATCCTTCATTCCAAGTTCTCAGTCTAGCCAGCAGGTTGCTGAGATCACATTTCCT
TCCTCCGCTCTGCTCCTGTGGATACTGTACATTGTTCTCGGCATCTTCCCCAGTTTCTACTCAG
GTATTCATGCTCCTGTCTGTCCTTAACTCTTCTCATGTTTAACCAGTCATTAACCTGCCCAGTT
TGTCAGAGTTCCAAACACATGATCAAGACTTTTAAGAACTCAAGGAACTGCTGACATTTTGTTT
CCTATCAGCTTTGTCTGTACCGTCTTGTCACGCCCAGTGCCATCTAATTAAACCCTGTTCCTCT
CCACGCACTCATCAGGTTTGTGTTTTATTATCTTCCTTTGACTGTCCTGTTTCTAGACTATTTT
TCTTGCTTGATAAAGAATGTCATGTTTGAGTTTCCCCACAAAAGCCAGGTATCTTAAGAGTAGA
AAATGGGTTTAACTCCTTTTTCATTCCATACCCTCACTCATCAGCTGAGATGCCTTTTAGGCTG
CATAGCACTGGAACTTTCCTAGAGTGATGGTTCTGCTGTCTGGGTCTTCTGGGCACATTCTTCC
ACTGACTTAAGGTGCTCTATACCTAGCATAGCCCCAGGACAACTACTGAGCAGAACAGCTATTT
CCTGAGAATTACCATAGCACACTGAGACTGGTACTCCCTACTAGACAGAAACTGATCCCAGTAA
TAAACTTTGATAATAAAGACAGTAGGCTCTGGTGGTTTTATTTACCTACTGGTAGTGTCAAAAG
TTAAGTTTTAAGCTATTGCCTACATGTGACTCATCAATCTGGCAGCACTGCGTGACACCACTGA
AGCAGTCTCCTGGCATGTACTGCAAGTGGTGCAAGCTTTGTTTTAAAGGAAGGGGACTATAGGG
TTAAACTAGTTCATAAAAGTTAGAGAGGTTCAGATAGGTTTCTTCTGTAGATTGTCTTAGCAGT
GTTACAGCCATGATTAAAGTTACAGAGGAGTCAATGTGCAAAGTTGATAGATGTCATTTTCATA
AATTTCTCAAGTATAAGTATATTCACAGGCTTCTATTGTGTGCCGTTAAGCACAGAAGTGTTAG
ATGGACTTGGTAACAGTGGGGGAAACAAAGTGCTAGGGTGTTACAATGAATGGCTAAGGTATGT
GCCTGGTAAAGTAAGGCAGACAGTTGGTACATAGTCACCTGTGGCTAAACACGCTACTAAAACC
TAAAAACAGTCGAAACAACTTGGGAGTGAGTCACTGTAATTACAGTCTCTTAACAGCTTTCTTC
AAGTGCTTTTCCTAAGTTATTTTTGACAATGTGTTTATTATTTCCTAATTGTAGGACATTGCAT
ATAGACGCATGACCAACAGAGATAACAGATATAGAGCCAGCCTTTGGTAGAACACAAAAATTGA
AATCTTTTTCAGGAACTCTTAAATATCTTAATTTCTATTATGTCCTTGCCATACTCCCAACCCC
ATCTGCCCACTTCAGAAAATCACTTGACACCTGGCATGGAAGACAGACCCAAGTGTAAACCTCA
AAACTGGATGGATCTGGAACCCTGTGGTCTCACTGGAGAAGTCACTAAGCATAGGCCAGGGCCT
AGCACAGTGAACAACTTCGAGCTTAGAACATCCTCTGCTACACCCTTTTGGAATTCTCCATTGC
TGGGGACAGCCAAGACCAGCTACCACTCATAGCCGCCTCTGTGAATTCAGGAGAATACACAACA
CCACATCCTGGGCAGCACTGGGGCCCTTTGTGCAGCAGTGGTCTGTGCCCATCATTCCAAATCC
TTTCGACCTCAAAAGGTTCTTGAGTGTCCCCCACCTGACACCCTAAAAGGTTTGCTGTTTGGGT
TTTTTTATTATTTTTTTTAAGTCTTAAGCTGCATTCCTTTGAAGTTTGAGCTAAGATCTCATAC
GGCTGCACTTTTGCTTCTGTGGAAGAGAATATTCCTTATCTGCTTATTTGAATAAACAGAAAAG
GGGTTTCTCCCAAAA

hide sequence

RefSeq Acc Id:

XM_017598827 ⟹ XP_017454316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	81,181,684 - 81,196,027 (-)	NCBI
mRatBN7.2	13	78,648,718 - 78,662,728 (-)	NCBI
Rnor_6.0	13	84,604,400 - 84,618,357 (-)	NCBI

Sequence:

show sequence

CGGACTTGGCTTTGGGAGGTCCTTTGAGGCAGAAAGACTTAAGTTTCTGAAGTGGCTTGTGGAC
AGCGCCTATGAATCTGGAAAATCCAGAAATGGAGTCCCGAGCCTACCCTCTAAATTTGACCCTG
AAAGAAGAGCAAAAAGAAGATGAGGTTGAGATCCAGGAATTGGAGGATGGTCCCGTAGAGATGC
AGAAAGTGCAAATCTGCTCGGAAGGCACGTGGGTACCAGCCCTATTTGATGAGGTGGCCATATA
TTTTTCGGATGAGGAGTGGGAAGTTCTGACAGAGCAACAAAAAGCCCTCTACCGGGAAGTCATG
AGGATGAATTATGAGACTGTCCTGTCCCTGGAATTCCCATTCCCCAAGCCAGATATGATCAATC
GGTTGGAAAGGGAAGAGGAGTGTCCTGAATCTGATGAGTGGCGGCTCCAGGGAGTAACCTTTGC
AGAAAATGAAGAATCTGATTTTAGGACTCCAGATTGGGCCAACCCGATGAATGCCACCTCCCAT
TTTCCTCAACCTCAGCACTTCAACAGCTTTGGGCTGCGTCTGCCGCAGGACATCACTGAACTGC
CTGAGTGGAGTGAGGGGTACCCCTTCTATATGGCCATGGGCTTCCCTGGGTATGACCTCTCAGC
TGACGACTTGGCGAGCAAGTTTCAGTTCAGTCGCGGCATGCGCCGCAGTTACGATGCGGGGTTC
AAGCTGATGGTGGTGGAGCACGCTGAGAGTACCAACAACTGTCAGGCTGCCAAGCAGTTCGGGG
TGTTGGAAAAGAATGTCCGAGACTGGCGCAAAGTGAAGCCACAGCTCCAAAACGCCCATGCCAT
GCGGCGGGCATTCCGAGGCCCCAAGAATGGAAGATTTGCTCTGGTAGACCAGCGGGTGGCTGAG
TATGTCAGATACATGCAGGCCAAAGGGGACCCCATCACCAGGGAGGCAATGCAGTTGAAAGCTC
TTGAAATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCAAGTCTGGGCTGGTGTCG
GAGGATGATGAGAAGGTATGACCTATCCCTGAGGCATAAAGTGCCAGTTCCTCAGCACCTGGCC
GAGGACCTGACTGAGAAGCTCGTCACTTACCAGCAGAGTGTGCTTGCTCTGCGCCGGACACACG
ACTATGAGGTGGCACAGATGGGCAATGCAGATGAAACACCCATCTGCTTAGAAGTGCCCTCTAG
AGTGACTGTTGACAACCAGGGTGAAAAGCCCATCCTGGTCAAGACACCAGGCAGGGAGAAACTG
AGGATCACAGCCATGCTGGGGGTCTTGGCTGATGGGAGGAAGTTACCACCATACATCATCTTGA
GGGGGACATATATCCCCCCTGGGAAGTTTCCCAGTGGCATGGAAATCCGCTGCCACCGCTATGG
ATGGATGACTGAGGACTTGATGCAAGACTGGTTGGAAGTTGTGTGGAGACGGAGAACTGGAGCT
GTACCCAAACAACGAGGGATGCTGATCCTGAATGGCTTCCGGTGCCATGCCACCGACTCTGTGA
AGACTTCCATGGAGAGTATGAACACAGACATGGTGATTATCCCGGGGGGCCTGACCTCCCAGCT
GCAGGTGCTGGATGTGGTTGTCTACAAGCCACTGAATGACAGTGTTCGGGCCCAGTATTCCAAC
TGGCTTCTGGCTGGGAACCTGGCACTGAGCCCCACTGGAAATGCTAAGAAGCCACCGCTGGGCC
TCTTCCTGGAGTGGATCATGGTTGCGTGGAATAGTATCTCAAGTGAATCAATTGTCCAGGGGTT
CAGAAAGTGCCACATCTCTAGCAACTTAGAGGAAGAAGGTGATGTCCTCTGGGAAATCGAGGGC
GAGTTGCCCAAAGAACGTGGTCATGAAGGTGTGGCTGAGGATGACTGAGAGGATTCAGGTAACT
GGTCTGGAATAGATCCTCCGCCATCACTGCTGCCCCTGGTCGTAGCTAGCACTTACCTTTTGTC
TGGCCCTTAGTTTTCTCTTTTCGAGTTCTCTTGAAATAGCCTGCCATGCAGCAGGTCCTAGCAC
TTTCATTGTCAGAAACTGATTTAGATTGGGTTCTGTGGCCTGGATCCAGGAGTGCTTTTATAAT
GGGTAACATGAACAAGGAACTGTCACAACACTTCACATGAGAGCAGTCCCACTGCAAAGTTACT
TGGGCCTCTAGACACAGTCTGACATTGTTTACTTCACAAAAAGGTTGTCTAAAGAGACAACTTT
CTTTTAAAATGCTGAACATTTAGGGCTGGGCTGTCTGCTTGAATTACTTAACAAAGTTGCACTG
CCTTTCACTGATCTGCAGGACCACCGCCCAGGGAGAGAACAAAGTCTGCCTTCAGTTTGGTAAC
CTCTGGTCCTCAGCTCTGTGTCCTAGGGAGGTTATTATCATCTCCATGTCCACTAGGGAGATGA
CAATATGTATTGTTTGCTTTTGTCTAGGGAATATTGAGAGTTTAAAAATATCATCTTGCTTTCA
TAGAACTTCAGTTATGGGGTGAGCCGTTAGAGGCAATTCCTGTTGTCAGCAGGAATCTGAAAGA
TGATGTTTTTAAACTGAATCTTTGAAGAGCTGCAGAGCTGGCCTAGCAGTTAAGAGCATAACTG
TTCCTGCACAGTTCGGTTCCCAGCACCCACATCCTACAGCTCATAACACCTGCAACTTGAGTTT
GAGTCCAGTGACCTCTTTTAGCCTCCCTTTGACACCTGCAGTCACATGCACACTTTCACACACA
GAAACGCTGTATTTGTGTGACTAAAAACAGCCTTGGGCTAGAGAGATGGCTCAGCAGTTAGGGA
TGCTTACCATTCATCCTTGCAGAGGACTGCATTTAGTTTCCAGCACCTGTATAACAGCTCACAA
CCAGCTGTAACTCCAGTTCCAGGGCATCCAATGCCCTCTTCTAGCCTCTGTGCTCCTGCATATA
TATGGTGCAGACTCACACATAGACACATAAAATTAACCTAGCAAAGGCCCACAGCCCCTATACA
CACACTTTGAGCAAACAGGAGAAGGACCAGAGCCAGAGTAAGGGACACATAGAAAGCAGACAAC
TCGCCCCTTTCCCATTTTCCTTTTCAATCTACCTACATACTTTGAAAAGGAAAATGGCCAGCTC
TTTAATAGAAAACCTAAAATTAGCATACCTTTCCTTTAAAAACGACTATTAGTTTACATTTTAC
TTGTCTCCCTCAACCCCACCACGCAAGTGAAAGCTAATAGAAGTCTTTGCCCCGTGAGCTGTAT
ACGCACAGGCTCCTTAGTGGCACACACCCCCTTCCTGTCCTCATACCCTACACACTCTTTATAA
AGCCCATGGATTCAGGCTCCCTCCTTTGCTGCTGACCACTCTGCTGCCCCATTGGACAGCAGAC
TTTGAGTTGCAGTTGTTTTAGCCTTTCACATTCTTGCTTTCACCCTGTTAGAAAACACTTTCAA
TTTTCTAAGCAATTTACCACTCCAGGAACCTAGTCAAAGACTGCCAGAAAAGGAAAGGGCAGAA
GACCATGCCAAGCCACAGCTGTGCACCCAGGGACATTCCACATCAGCTTGAGCTTCTGCTCCTC
CAGATGCTACCATCTCTGTACAGCTGCTGGGGGAGGTAACGGAAACAGACATGAAGAGATTCAG
AAGACACAAGCATTAAACCACCTCCTGCTGTGGAATAGAACACTATTTTGTTAAAAGACATCCA
AAAGTCTGAACTGATGTCTACTTAGGTTCTCTCCGTTTTCCAGCAAATGGAACTGTGATTGAAA
CAGTTGGGAGAAAAAGGAAAACTTGTAAGATGGCTGCAGAGAGACCAAAATGGGCAGTGAGGCT
CTCTGAGCATCCTTAGTCTGGAGAGCATGAACATCCCATCAAGACAGTCCTATCTACTATACCC
TGTCAGATGTCAGCCAAGTCTAGGACCCTTATGTTCAGCAACAAGATTAGAAAAGAAACTTGGT
GCCCCATTTCTTCTCTCAGAGCTGTCTCGATCTGCTCAGTCTAGAAGCCTATAAACCCAAATGA
GCAAAGGTGTTTTCTGGAGAACACCTCTACAGCACCAAGATGTAATGTCACCACAGCTCTCATG
TCCTTACTGTGGGAAAAAAACCTCAAGTGTGCGTGTGTGTGTATGTGTGTACACCTCCATAGGT
GCTTCAGTAGAAGCTGTTTCCACACAGGTCAAGACTAAAGGAAAGCTTTTGTAGAAACATGTCA
CACATGTACTCCTGTTACATGTCTACTCACTGAGGGAATGAGATGTTAATGAGCAGGGGTGGGG
GTCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGTTCTTCCAGAGGGCCTGAGTTCAATT
CTCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGT
CTGAAGACAGTGACAGTGTACTCATTTAAATAAAATCTTTAAAAAGCAACAAACAAAAAAACCA
GTAGGACACTGGCTTGGTGCAGAAGATGGCTTTTCTGTAGGTAAACTAGGTTAGGGTGCAAGAT
AAAGACTTTAAAATAAACGATGCTCTTACAGTCACCTTTCCAATCTGGTTGGCAGCTAGACCTT
TCTAGTGTCTTACATGATGACCTGTCACCTTTAATGAGGCAGCCCATGGTGCACAAGCCTTTGC
TTTTCAGGCTGCCTGCAGGAGTCGACATTCCTGTCTACCCAGAACAAGGCCCACTGACTTGGAA
AAAGGCAATGGGAGGAACTGGGCCTTAAGTCACAGCTGCTTTTAGACTCCAACCATACAAGAAT
AGGAGTCACTGACGACTTCTGCAATGGTAATTTGCATTCTCATTTAAGTCAACTGCTAAGAAAA
ACATTCCTTCAACACTATGCTACAAAACTCCCACCAGAACCTCATAGGCAAAGCCATTGCTAGA
TCCTTCATTCCAAGTTCTCAGTCTAGCCAGCAGGTTGCTGAGATCACATTTCCTTCCTCCGCTC
TGCTCCTGTGGATACTGTACATTGTTCTCGGCATCTTCCCCAGTTTCTACTCAGGTATTCATGC
TCCTGTCTGTCCTTAACTCTTCTCATGTTTAACCAGTCATTAACCTGCCCAGTTTGTCAGAGTT
CCAAACACATGATCAAGACTTTTAAGAACTCAAGGAACTGCTGACATTTTGTTTCCTATCAGCT
TTGTCTGTACCGTCTTGTCACGCCCAGTGCCATCTAATTAAACCCTGTTCCTCTCCACGCACTC
ATCAGGTTTGTGTTTTATTATCTTCCTTTGACTGTCCTGTTTCTAGACTATTTTTCTTGCTTGA
TAAAGAATGTCATGTTTGAGTTTCCCCACAAAAGCCAGGTATCTTAAGAGTAGAAAATGGGTTT
AACTCCTTTTTCATTCCATACCCTCACTCATCAGCTGAGATGCCTTTTAGGCTGCATAGCACTG
GAACTTTCCTAGAGTGATGGTTCTGCTGTCTGGGTCTTCTGGGCACATTCTTCCACTGACTTAA
GGTGCTCTATACCTAGCATAGCCCCAGGACAACTACTGAGCAGAACAGCTATTTCCTGAGAATT
ACCATAGCACACTGAGACTGGTACTCCCTACTAGACAGAAACTGATCCCAGTAATAAACTTTGA
TAATAAAGACA

hide sequence

RefSeq Acc Id:

XM_017598828 ⟹ XP_017454317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	81,181,684 - 81,195,930 (-)	NCBI
mRatBN7.2	13	78,648,718 - 78,662,862 (-)	NCBI
Rnor_6.0	13	84,604,400 - 84,618,489 (-)	NCBI

Sequence:

show sequence

CTTTTACGGGGAACCTCTTTGTACCAGCCTGAGGAGGCTTCGAATAGAGAGAATTTGCAACCCA
GAGGCGAGGAGAAGTCCTGCCAGAAATGGAGTCCCGAGCCTACCCTCTAAATTTGACCCTGAAA
GAAGAGCAAAAAGAAGATGAGGTTGAGATCCAGGAATTGGAGGATGGTCCCGTAGAGATGCAGA
AAGTGCAAATCTGCTCGGAAGGCACGTGGGTACCAGCCCTATTTGATGAGGTGGCCATATATTT
TTCGGATGAGGAGTGGGAAGTTCTGACAGAGCAACAAAAAGCCCTCTACCGGGAAGTCATGAGG
ATGAATTATGAGACTGTCCTGTCCCTGGAATTCCCATTCCCCAAGCCAGATATGATCAATCGGT
TGGAAAGGGAAGAGGAGTGTCCTGAATCTGATGAGTGGCGGCTCCAGGGAGTAACCTTTGCAGA
AAATGAAGAATCTGATTTTAGGACTCCAGATTGGGCCAACCCGATGAATGCCACCTCCCATTTT
CCTCAACCTCAGCACTTCAACAGCTTTGGGCTGCGTCTGCCGCAGGACATCACTGAACTGCCTG
AGTGGAGTGAGGGGTACCCCTTCTATATGGCCATGGGCTTCCCTGGGTATGACCTCTCAGCTGA
CGACTTGGCGAGCAAGTTTCAGTTCAGTCGCGGCATGCGCCGCAGTTACGATGCGGGGTTCAAG
CTGATGGTGGTGGAGCACGCTGAGAGTACCAACAACTGTCAGGCTGCCAAGCAGTTCGGGGTGT
TGGAAAAGAATGTCCGAGACTGGCGCAAAGTGAAGCCACAGCTCCAAAACGCCCATGCCATGCG
GCGGGCATTCCGAGGCCCCAAGAATGGAAGATTTGCTCTGGTAGACCAGCGGGTGGCTGAGTAT
GTCAGATACATGCAGGCCAAAGGGGACCCCATCACCAGGGAGGCAATGCAGTTGAAAGCTCTTG
AAATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCAAGTCTGGGCTGGTGTCGGAG
GATGATGAGAAGGTATGACCTATCCCTGAGGCATAAAGTGCCAGTTCCTCAGCACCTGGCCGAG
GACCTGACTGAGAAGCTCGTCACTTACCAGCAGAGTGTGCTTGCTCTGCGCCGGACACACGACT
ATGAGGTGGCACAGATGGGCAATGCAGATGAAACACCCATCTGCTTAGAAGTGCCCTCTAGAGT
GACTGTTGACAACCAGGGTGAAAAGCCCATCCTGGTCAAGACACCAGGCAGGGAGAAACTGAGG
ATCACAGCCATGCTGGGGGTCTTGGCTGATGGGAGGAAGTTACCACCATACATCATCTTGAGGG
GGACATATATCCCCCCTGGGAAGTTTCCCAGTGGCATGGAAATCCGCTGCCACCGCTATGGATG
GATGACTGAGGACTTGATGCAAGACTGGTTGGAAGTTGTGTGGAGACGGAGAACTGGAGCTGTA
CCCAAACAACGAGGGATGCTGATCCTGAATGGCTTCCGGTGCCATGCCACCGACTCTGTGAAGA
CTTCCATGGAGAGTATGAACACAGACATGGTGATTATCCCGGGGGGCCTGACCTCCCAGCTGCA
GGTGCTGGATGTGGTTGTCTACAAGCCACTGAATGACAGTGTTCGGGCCCAGTATTCCAACTGG
CTTCTGGCTGGGAACCTGGCACTGAGCCCCACTGGAAATGCTAAGAAGCCACCGCTGGGCCTCT
TCCTGGAGTGGATCATGGTTGCGTGGAATAGTATCTCAAGTGAATCAATTGTCCAGGGGTTCAG
AAAGTGCCACATCTCTAGCAACTTAGAGGAAGAAGGTGATGTCCTCTGGGAAATCGAGGGCGAG
TTGCCCAAAGAACGTGGTCATGAAGGTGTGGCTGAGGATGACTGAGAGGATTCAGGTAACTGGT
CTGGAATAGATCCTCCGCCATCACTGCTGCCCCTGGTCGTAGCTAGCACTTACCTTTTGTCTGG
CCCTTAGTTTTCTCTTTTCGAGTTCTCTTGAAATAGCCTGCCATGCAGCAGGTCCTAGCACTTT
CATTGTCAGAAACTGATTTAGATTGGGTTCTGTGGCCTGGATCCAGGAGTGCTTTTATAATGGG
TAACATGAACAAGGAACTGTCACAACACTTCACATGAGAGCAGTCCCACTGCAAAGTTACTTGG
GCCTCTAGACACAGTCTGACATTGTTTACTTCACAAAAAGGTTGTCTAAAGAGACAACTTTCTT
TTAAAATGCTGAACATTTAGGGCTGGGCTGTCTGCTTGAATTACTTAACAAAGTTGCACTGCCT
TTCACTGATCTGCAGGACCACCGCCCAGGGAGAGAACAAAGTCTGCCTTCAGTTTGGTAACCTC
TGGTCCTCAGCTCTGTGTCCTAGGGAGGTTATTATCATCTCCATGTCCACTAGGGAGATGACAA
TATGTATTGTTTGCTTTTGTCTAGGGAATATTGAGAGTTTAAAAATATCATCTTGCTTTCATAG
AACTTCAGTTATGGGGTGAGCCGTTAGAGGCAATTCCTGTTGTCAGCAGGAATCTGAAAGATGA
TGTTTTTAAACTGAATCTTTGAAGAGCTGCAGAGCTGGCCTAGCAGTTAAGAGCATAACTGTTC
CTGCACAGTTCGGTTCCCAGCACCCACATCCTACAGCTCATAACACCTGCAACTTGAGTTTGAG
TCCAGTGACCTCTTTTAGCCTCCCTTTGACACCTGCAGTCACATGCACACTTTCACACACAGAA
ACGCTGTATTTGTGTGACTAAAAACAGCCTTGGGCTAGAGAGATGGCTCAGCAGTTAGGGATGC
TTACCATTCATCCTTGCAGAGGACTGCATTTAGTTTCCAGCACCTGTATAACAGCTCACAACCA
GCTGTAACTCCAGTTCCAGGGCATCCAATGCCCTCTTCTAGCCTCTGTGCTCCTGCATATATAT
GGTGCAGACTCACACATAGACACATAAAATTAACCTAGCAAAGGCCCACAGCCCCTATACACAC
ACTTTGAGCAAACAGGAGAAGGACCAGAGCCAGAGTAAGGGACACATAGAAAGCAGACAACTCG
CCCCTTTCCCATTTTCCTTTTCAATCTACCTACATACTTTGAAAAGGAAAATGGCCAGCTCTTT
AATAGAAAACCTAAAATTAGCATACCTTTCCTTTAAAAACGACTATTAGTTTACATTTTACTTG
TCTCCCTCAACCCCACCACGCAAGTGAAAGCTAATAGAAGTCTTTGCCCCGTGAGCTGTATACG
CACAGGCTCCTTAGTGGCACACACCCCCTTCCTGTCCTCATACCCTACACACTCTTTATAAAGC
CCATGGATTCAGGCTCCCTCCTTTGCTGCTGACCACTCTGCTGCCCCATTGGACAGCAGACTTT
GAGTTGCAGTTGTTTTAGCCTTTCACATTCTTGCTTTCACCCTGTTAGAAAACACTTTCAATTT
TCTAAGCAATTTACCACTCCAGGAACCTAGTCAAAGACTGCCAGAAAAGGAAAGGGCAGAAGAC
CATGCCAAGCCACAGCTGTGCACCCAGGGACATTCCACATCAGCTTGAGCTTCTGCTCCTCCAG
ATGCTACCATCTCTGTACAGCTGCTGGGGGAGGTAACGGAAACAGACATGAAGAGATTCAGAAG
ACACAAGCATTAAACCACCTCCTGCTGTGGAATAGAACACTATTTTGTTAAAAGACATCCAAAA
GTCTGAACTGATGTCTACTTAGGTTCTCTCCGTTTTCCAGCAAATGGAACTGTGATTGAAACAG
TTGGGAGAAAAAGGAAAACTTGTAAGATGGCTGCAGAGAGACCAAAATGGGCAGTGAGGCTCTC
TGAGCATCCTTAGTCTGGAGAGCATGAACATCCCATCAAGACAGTCCTATCTACTATACCCTGT
CAGATGTCAGCCAAGTCTAGGACCCTTATGTTCAGCAACAAGATTAGAAAAGAAACTTGGTGCC
CCATTTCTTCTCTCAGAGCTGTCTCGATCTGCTCAGTCTAGAAGCCTATAAACCCAAATGAGCA
AAGGTGTTTTCTGGAGAACACCTCTACAGCACCAAGATGTAATGTCACCACAGCTCTCATGTCC
TTACTGTGGGAAAAAAACCTCAAGTGTGCGTGTGTGTGTATGTGTGTACACCTCCATAGGTGCT
TCAGTAGAAGCTGTTTCCACACAGGTCAAGACTAAAGGAAAGCTTTTGTAGAAACATGTCACAC
ATGTACTCCTGTTACATGTCTACTCACTGAGGGAATGAGATGTTAATGAGCAGGGGTGGGGGTC
TGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGTTCTTCCAGAGGGCCTGAGTTCAATTCTC
AGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTG
AAGACAGTGACAGTGTACTCATTTAAATAAAATCTTTAAAAAGCAACAAACAAAAAAACCAGTA
GGACACTGGCTTGGTGCAGAAGATGGCTTTTCTGTAGGTAAACTAGGTTAGGGTGCAAGATAAA
GACTTTAAAATAAACGATGCTCTTACAGTCACCTTTCCAATCTGGTTGGCAGCTAGACCTTTCT
AGTGTCTTACATGATGACCTGTCACCTTTAATGAGGCAGCCCATGGTGCACAAGCCTTTGCTTT
TCAGGCTGCCTGCAGGAGTCGACATTCCTGTCTACCCAGAACAAGGCCCACTGACTTGGAAAAA
GGCAATGGGAGGAACTGGGCCTTAAGTCACAGCTGCTTTTAGACTCCAACCATACAAGAATAGG
AGTCACTGACGACTTCTGCAATGGTAATTTGCATTCTCATTTAAGTCAACTGCTAAGAAAAACA
TTCCTTCAACACTATGCTACAAAACTCCCACCAGAACCTCATAGGCAAAGCCATTGCTAGATCC
TTCATTCCAAGTTCTCAGTCTAGCCAGCAGGTTGCTGAGATCACATTTCCTTCCTCCGCTCTGC
TCCTGTGGATACTGTACATTGTTCTCGGCATCTTCCCCAGTTTCTACTCAGGTATTCATGCTCC
TGTCTGTCCTTAACTCTTCTCATGTTTAACCAGTCATTAACCTGCCCAGTTTGTCAGAGTTCCA
AACACATGATCAAGACTTTTAAGAACTCAAGGAACTGCTGACATTTTGTTTCCTATCAGCTTTG
TCTGTACCGTCTTGTCACGCCCAGTGCCATCTAATTAAACCCTGTTCCTCTCCACGCACTCATC
AGGTTTGTGTTTTATTATCTTCCTTTGACTGTCCTGTTTCTAGACTATTTTTCTTGCTTGATAA
AGAATGTCATGTTTGAGTTTCCCCACAAAAGCCAGGTATCTTAAGAGTAGAAAATGGGTTTAAC
TCCTTTTTCATTCCATACCCTCACTCATCAGCTGAGATGCCTTTTAGGCTGCATAGCACTGGAA
CTTTCCTAGAGTGATGGTTCTGCTGTCTGGGTCTTCTGGGCACATTCTTCCACTGACTTAAGGT
GCTCTATACCTAGCATAGCCCCAGGACAACTACTGAGCAGAACAGCTATTTCCTGAGAATTACC
ATAGCACACTGAGACTGGTACTCCCTACTAGACAGAAACTGATCCCAGTAATAAACTTTGATAA
TAAAGACA

hide sequence

RefSeq Acc Id:

XM_039090789 ⟹ XP_038946717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	81,181,684 - 81,195,101 (-)	NCBI
mRatBN7.2	13	78,648,718 - 78,662,138 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100664	(Get FASTA)	NCBI Sequence Viewer
	XP_017454316	(Get FASTA)	NCBI Sequence Viewer
	XP_017454317	(Get FASTA)	NCBI Sequence Viewer
	XP_038946717	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09294	(Get FASTA)	NCBI Sequence Viewer
	EDM09295	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051209
	ENSRNOP00000051209.2
	ENSRNOP00000072655.2
	ENSRNOP00000088020
	ENSRNOP00000088020.1

RefSeq Acc Id:

NP_001100664 ⟸ NM_001107194

- UniProtKB:

D3ZV46 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPGHNPRRRLRRRHPLGREMESRAYPLNLTLKEEQKEDEVEIQELEDGPVEMQKVQICSEGTWV
PALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLEFPFPKPDMINRLEREEECPESD
EWRLQGVTFAENEESDFRTPDWANPMNATSHFPQPQHFNSFGLRLPQDITELPEWSEGYPFYMA
MGFPGYDLSADDLASKFQFSRGMRRSYDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKV
KPQLQNAHAMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEK
GFKASLGWCRRMMRRYDLSLRHKVPVPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADE
TPICLEVPSRVTVDNQGEKPILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPS
GMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRCHATDSVKTSMESMNTDMV
IIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMVAWNS
ISSESIVQGFRKCHISSNLEEEGDVLWEIEGELPKERGHEGVAEDD

hide sequence

RefSeq Acc Id:

XP_017454317 ⟸ XM_017598828

- Peptide Label:

isoform X2

- Sequence:

show sequence

MESRAYPLNLTLKEEQKEDEVEIQELEDGPVEMQKVQICSEGTWVPALFDEVAIYFSDEEWEVL
TEQQKALYREVMRMNYETVLSLEFPFPKPDMINRLEREEECPESDEWRLQGVTFAENEESDFRT
PDWANPMNATSHFPQPQHFNSFGLRLPQDITELPEWSEGYPFYMAMGFPGYDLSADDLASKFQF
SRGMRRSYDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKN
GRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLS
LRHKVPVPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADETPICLEVPSRVTVDNQGEK
PILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQD
WLEVVWRRRTGAVPKQRGMLILNGFRCHATDSVKTSMESMNTDMVIIPGGLTSQLQVLDVVVYK
PLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMVAWNSISSESIVQGFRKCHISSNL
EEEGDVLWEIEGELPKERGHEGVAEDD

hide sequence

RefSeq Acc Id:	XP_017454316 ⟸ XM_017598827
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A8F7 (UniProtKB/TrEMBL), A6IDK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLENPEMESRAYPLNLTLKEEQKEDEVEIQELEDGPVEMQKVQICSEGTWVPALFDEVAIYFS DEEWEVLTEQQKALYREVMRMNYETVLSLEFPFPKPDMINRLEREEECPESDEWRLQGVTFAEN EESDFRTPDWANPMNATSHFPQPQHFNSFGLRLPQDITELPEWSEGYPFYMAMGFPGYDLSADD LASKFQFSRGMRRSYDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRR AFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRM MRRYDLSLRHKVPVPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADETPICLEVPSRVT VDNQGEKPILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWM TEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRCHATDSVKTSMESMNTDMVIIPGGLTSQLQV LDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMVAWNSISSESIVQGFRK CHISSNLEEEGDVLWEIEGELPKERGHEGVAEDD hide sequence

Ensembl Acc Id:

ENSRNOP00000051209 ⟸ ENSRNOT00000045056

Ensembl Acc Id:

ENSRNOP00000072655 ⟸ ENSRNOT00000089827

RefSeq Acc Id:	XP_038946717 ⟸ XM_039090789
- Peptide Label:	isoform X3
- UniProtKB:	A6IDK3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088020 ⟸ ENSRNOT00000100051

Protein Domains

HTH CENPB-type KRAB KRAB-related

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZV46-F1-model_v2	AlphaFold	D3ZV46	1-622	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698970

Promoter ID:

EPDNEW_R9495

Type:

multiple initiation site

Name:

Pogk_1

Description:

pogo transposable element derived with KRAB domain

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	84,619,062 - 84,619,122	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308951	AgrOrtholog
BioCyc Gene	G2FUF-17544	BioCyc
Ensembl Genes	ENSRNOG00000032058	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045056	ENTREZGENE
	ENSRNOT00000045056.5	UniProtKB/TrEMBL
	ENSRNOT00000089827.3	UniProtKB/TrEMBL
	ENSRNOT00000100051	ENTREZGENE
	ENSRNOT00000100051.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Brinker_DNA-bd	UniProtKB/TrEMBL
	CenT-Element_Derived	UniProtKB/TrEMBL
	DDE_SF_endonuclease_CENPB-like	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Krueppel-associated_box-rel	UniProtKB/TrEMBL
	Krueppel_C2H2_ZnF	UniProtKB/TrEMBL
	Pogo/CenpB/PDC2_DNA-bd_HTH	UniProtKB/TrEMBL
KEGG Report	rno:304941	UniProtKB/TrEMBL
NCBI Gene	304941	ENTREZGENE
PANTHER	GASTRULA ZINC FINGER PROTEIN XLCGF57.1-LIKE-RELATED	UniProtKB/TrEMBL
	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/TrEMBL
	POGO TRANSPOSABLE ELEMENT WITH KRAB DOMAIN	UniProtKB/TrEMBL
	TRANSPOSON	UniProtKB/TrEMBL
Pfam	BrkDBD	UniProtKB/TrEMBL
	DDE	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	Transposase_Tc5	UniProtKB/TrEMBL
PhenoGen	Pogk	PhenoGen
PROSITE	HTH_CENPB	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	KRAB_RELATED	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032058	RatGTEx
SMART	CENPB	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
UniProt	A0A0G2K3I8_RAT	UniProtKB/TrEMBL
	A0A8I6A8F7	ENTREZGENE, UniProtKB/TrEMBL
	A6IDK2	ENTREZGENE, UniProtKB/TrEMBL
	A6IDK3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZV46	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-04-05	Pogk	pogo transposable element derived with KRAB domain	Pogk	pogo transposable element with KRAB domain	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Pogk	pogo transposable element with KRAB domain	Pogk_predicted	pogo transposable element with KRAB domain (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pogk_predicted	pogo transposable element with KRAB domain (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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