Hm13 (histocompatibility minor 13) - Rat Genome Database

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Gene: Hm13 (histocompatibility minor 13) Rattus norvegicus
Analyze
Symbol: Hm13 (Ensembl: Mcts2)
Name: histocompatibility minor 13 (Ensembl:MCTS family member 2)
RGD ID: 1308946
Description: Predicted to enable aspartic endopeptidase activity, intramembrane cleaving; protein homodimerization activity; and ubiquitin protein ligase binding activity. Predicted to be involved in membrane protein proteolysis involved in retrograde protein transport, ER to cytosol and signal peptide processing. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in cell surface; endoplasmic reticulum membrane; and rough endoplasmic reticulum. Predicted to be part of Derlin-1 retrotranslocation complex. Predicted to be active in cytoplasmic side of endoplasmic reticulum membrane and lumenal side of endoplasmic reticulum membrane. Orthologous to human HM13 (histocompatibility minor 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H13; histocompatibility 13; LOC311545; minor histocompatibility antigen H13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,606,059 - 161,641,382 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3161,606,052 - 161,644,805 (+)EnsemblGRCr8
mRatBN7.23141,145,792 - 141,183,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,145,782 - 141,184,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3145,050,767 - 145,086,080 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,634,606 - 153,669,917 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,375,215 - 151,410,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,150,695 - 148,189,623 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,150,698 - 148,189,623 (+)Ensemblrn6Rnor6.0
Rnor_5.03154,555,170 - 154,594,098 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43143,020,648 - 143,059,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3139,895,459 - 139,934,248 (+)NCBICelera
RGSC_v3.13142,892,504 - 142,961,304 (+)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
glafenine  (EXP)
glyphosate  (ISO)
indometacin  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
methapyrilene  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulindac sulfide  (ISO)
testosterone  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. TRC8-dependent degradation of hepatitis C virus immature core protein regulates viral propagation and pathogenesis. Aizawa S, etal., Nat Commun. 2016 May 4;7:11379. doi: 10.1038/ncomms11379.
2. Inhibitors of signal peptide peptidase (SPP) affect HSV-1 infectivity in vitro and in vivo. Allen SJ, etal., Exp Eye Res. 2014 Jun;123:8-15. doi: 10.1016/j.exer.2014.04.004. Epub 2014 Apr 24.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Absence of Signal Peptide Peptidase, an Essential Herpes Simplex Virus 1 Glycoprotein K Binding Partner, Reduces Virus Infectivity In Vivo. Wang S and Ghiasi H, J Virol. 2019 Nov 13;93(23). pii: JVI.01309-19. doi: 10.1128/JVI.01309-19. Print 2019 Dec 1.
Additional References at PubMed
PMID:12972007   PMID:14741365   PMID:15385547   PMID:15998642   PMID:16730383   PMID:16829952   PMID:16873890   PMID:17965014   PMID:19946888   PMID:25002582   PMID:25239945   PMID:27996060  


Genomics

Comparative Map Data
Hm13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,606,059 - 161,641,382 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3161,606,052 - 161,644,805 (+)EnsemblGRCr8
mRatBN7.23141,145,792 - 141,183,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,145,782 - 141,184,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3145,050,767 - 145,086,080 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,634,606 - 153,669,917 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,375,215 - 151,410,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,150,695 - 148,189,623 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,150,698 - 148,189,623 (+)Ensemblrn6Rnor6.0
Rnor_5.03154,555,170 - 154,594,098 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43143,020,648 - 143,059,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3139,895,459 - 139,934,248 (+)NCBICelera
RGSC_v3.13142,892,504 - 142,961,304 (+)NCBI
Cytogenetic Map3q41NCBI
HM13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,514,442 - 31,569,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,514,370 - 31,577,923 (+)Ensemblhg38GRCh38
GRCh38.p14 Ensembl2031,563,166 - 31,564,076 (+)Ensemblhg38GRCh38
GRCh372030,102,245 - 30,157,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,565,902 - 29,621,031 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342029,565,901 - 29,591,257NCBI
Celera2026,858,423 - 26,913,551 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2026,890,440 - 26,945,730 (+)NCBIHuRef
CHM1_12030,006,150 - 30,061,281 (+)NCBICHM1_1
T2T-CHM13v2.02033,238,668 - 33,293,768 (+)NCBIT2T-CHM13v2.0
H13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,511,292 - 152,550,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,511,381 - 152,550,590 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382152,669,422 - 152,708,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,669,461 - 152,708,670 (+)Ensemblmm10GRCm38
MGSCv372152,495,197 - 152,534,404 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362152,360,940 - 152,398,265 (+)NCBIMGSCv36mm8
Celera2158,485,404 - 158,524,533 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Hm13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,362,724 - 29,408,840 (-)Ensembl
ChiLan1.0NW_00495542229,365,722 - 29,408,788 (-)NCBIChiLan1.0ChiLan1.0
HM13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,205,681 - 37,262,331 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,198,811 - 37,255,442 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,803,597 - 27,859,384 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12028,441,297 - 28,499,344 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2028,441,285 - 28,501,001 (+)EnsemblpanPan2panpan1.1
HM13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,026,851 - 21,067,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,026,366 - 21,071,165 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2420,674,903 - 20,715,412 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02421,713,695 - 21,754,672 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,713,704 - 21,754,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,992,044 - 21,032,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,097,128 - 21,137,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,527,475 - 21,567,990 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hm13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,108,510 - 170,152,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,539,826 - 18,583,813 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,539,873 - 18,583,605 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HM13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,248,570 - 35,288,539 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11735,248,575 - 35,288,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,078,434 - 40,117,783 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HM13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,925,316 - 35,975,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,925,290 - 35,977,982 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605090,980,941 - 91,032,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hm13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741921,023 - 977,703 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624741924,040 - 977,646 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hm13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15131,998,125 - 132,033,598 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hm13
266 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:142
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000010251
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
BE109797  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23141,157,503 - 141,157,716 (+)MAPPERmRatBN7.2
Rnor_6.03148,162,428 - 148,162,640NCBIRnor6.0
Rnor_5.03154,566,903 - 154,567,115UniSTSRnor5.0
RGSC_v3.43143,032,370 - 143,032,582UniSTSRGSC3.4
Celera3139,907,181 - 139,907,393UniSTS
RH 3.4 Map31267.8UniSTS
Cytogenetic Map3q41UniSTS
RH135106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23141,180,747 - 141,180,944 (+)MAPPERmRatBN7.2
Rnor_6.03148,185,668 - 148,185,864NCBIRnor6.0
Rnor_5.03154,590,143 - 154,590,339UniSTSRnor5.0
RGSC_v3.43143,055,611 - 143,055,807UniSTSRGSC3.4
Celera3139,930,293 - 139,930,489UniSTS
RH 3.4 Map31266.6UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010251   ⟹   ENSRNOP00000010251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,059 - 161,644,805 (+)Ensembl
mRatBN7.2 Ensembl3141,145,782 - 141,184,703 (+)Ensembl
Rnor_6.0 Ensembl3148,150,706 - 148,189,623 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087075   ⟹   ENSRNOP00000072050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3141,145,803 - 141,181,116 (+)Ensembl
Rnor_6.0 Ensembl3148,150,698 - 148,186,036 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094861   ⟹   ENSRNOP00000091932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,052 - 161,641,047 (+)Ensembl
mRatBN7.2 Ensembl3141,145,782 - 141,180,781 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095517   ⟹   ENSRNOP00000077139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,059 - 161,644,805 (+)Ensembl
mRatBN7.2 Ensembl3141,145,859 - 141,181,086 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099070   ⟹   ENSRNOP00000086681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,052 - 161,641,380 (+)Ensembl
mRatBN7.2 Ensembl3141,145,785 - 141,181,111 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104940   ⟹   ENSRNOP00000076593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,059 - 161,644,805 (+)Ensembl
mRatBN7.2 Ensembl3141,145,823 - 141,181,114 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107605   ⟹   ENSRNOP00000086628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,606,052 - 161,637,071 (+)Ensembl
mRatBN7.2 Ensembl3141,145,782 - 141,176,805 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109118   ⟹   ENSRNOP00000080850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3141,162,404 - 141,181,233 (+)Ensembl
RefSeq Acc Id: NM_001399536   ⟹   NP_001386465
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83161,606,059 - 161,641,382 (+)NCBI
mRatBN7.23141,145,792 - 141,181,116 (+)NCBI
RefSeq Acc Id: NM_001399537   ⟹   NP_001386466
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83161,606,059 - 161,641,382 (+)NCBI
mRatBN7.23141,145,792 - 141,181,116 (+)NCBI
RefSeq Acc Id: XM_063283823   ⟹   XP_063139893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83161,606,161 - 161,641,382 (+)NCBI
Ensembl Acc Id: ENSRNOP00000072050   ⟸   ENSRNOT00000087075
Ensembl Acc Id: ENSRNOP00000010251   ⟸   ENSRNOT00000010251
Ensembl Acc Id: ENSRNOP00000086628   ⟸   ENSRNOT00000107605
Ensembl Acc Id: ENSRNOP00000080850   ⟸   ENSRNOT00000109118
Ensembl Acc Id: ENSRNOP00000076593   ⟸   ENSRNOT00000104940
Ensembl Acc Id: ENSRNOP00000091932   ⟸   ENSRNOT00000094861
Ensembl Acc Id: ENSRNOP00000086681   ⟸   ENSRNOT00000099070
Ensembl Acc Id: ENSRNOP00000077139   ⟸   ENSRNOT00000095517
RefSeq Acc Id: NP_001386465   ⟸   NM_001399536
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A6G8 (UniProtKB/TrEMBL),   A6KHQ0 (UniProtKB/TrEMBL),   A6KHP8 (UniProtKB/TrEMBL),   D3ZP98 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386466   ⟸   NM_001399537
- Peptide Label: isoform 2
- UniProtKB: A6KHP9 (UniProtKB/TrEMBL),   A0A8I5Y7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139893   ⟸   XM_063283823
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y7G8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1Z9-F1-model_v2 AlphaFold A0A0G2K1Z9 1-378 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692548
Promoter ID:EPDNEW_R3072
Type:initiation region
Name:Hm13_1
Description:histocompatibility minor 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03148,150,735 - 148,150,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308946 AgrOrtholog
BioCyc Gene G2FUF-47252 BioCyc
Ensembl Genes ENSRNOG00000007738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010251 ENTREZGENE
  ENSRNOT00000010251.7 UniProtKB/TrEMBL
  ENSRNOT00000094861.2 UniProtKB/TrEMBL
  ENSRNOT00000095517.2 UniProtKB/TrEMBL
  ENSRNOT00000099070 ENTREZGENE
  ENSRNOT00000099070.2 UniProtKB/TrEMBL
  ENSRNOT00000104940.2 UniProtKB/TrEMBL
  ENSRNOT00000107605.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.472.100 UniProtKB/TrEMBL
InterPro Peptidase_A22 UniProtKB/TrEMBL
  Peptidase_A22B_SPP UniProtKB/TrEMBL
  Presenilin_C UniProtKB/TrEMBL
NCBI Gene 311545 ENTREZGENE
PANTHER MINOR HISTOCOMPATIBILITY ANTIGEN H13 UniProtKB/TrEMBL
  Peptidase_A22B UniProtKB/TrEMBL
Pfam Peptidase_A22B UniProtKB/TrEMBL
PhenoGen Hm13 PhenoGen
RatGTEx ENSRNOG00000007738 RatGTEx
SMART PSN UniProtKB/TrEMBL
UniProt A0A8I5Y7G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y910_RAT UniProtKB/TrEMBL
  A0A8I6A669_RAT UniProtKB/TrEMBL
  A0A8I6A6G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEK7_RAT UniProtKB/TrEMBL
  A6KHP8 ENTREZGENE, UniProtKB/TrEMBL
  A6KHP9 ENTREZGENE, UniProtKB/TrEMBL
  A6KHQ0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZP98 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-06-06 Hm13  histocompatibility minor 13  Hm13  histocompatibility 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-29 Hm13  histocompatibility 13  H13  histocompatibility 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 H13  histocompatibility 13   H13_predicted  histocompatibility 13 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 H13_predicted  histocompatibility 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED