Crtc2 (CREB regulated transcription coactivator 2) - Rat Genome Database

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Gene: Crtc2 (CREB regulated transcription coactivator 2) Rattus norvegicus
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Symbol: Crtc2
Name: CREB regulated transcription coactivator 2
RGD ID: 1308903
Description: Enables chromatin binding activity. Predicted to be involved in several processes, including cellular response to cAMP; gluconeogenesis; and regulation of DNA-templated transcription. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm and nucleus. Used to study type 2 diabetes mellitus. Orthologous to human CRTC2 (CREB regulated transcription coactivator 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CREB-regulated transcription coactivator 2; LOC310615; RGD1308903; similar to 4632407F12Rik protein; TORC-2; Torc2; transducer of CREB protein 2; transducer of regulated cAMP response element-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,007,233 - 178,017,397 (+)NCBIGRCr8
mRatBN7.22175,709,603 - 175,719,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,709,644 - 175,719,763 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,849,796 - 182,859,389 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,872,186 - 180,881,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,472,464 - 175,482,053 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,615,928 - 189,625,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,615,948 - 189,626,051 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,048,916 - 209,058,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,496,762 - 182,506,348 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,446,728 - 182,456,828 (+)NCBI
Celera2169,645,106 - 169,654,562 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. cAMP-responsive element-binding protein (CREB)-regulated transcription coactivator 2 (CRTC2) promotes glucagon clearance and hepatic amino acid catabolism to regulate glucose homeostasis. Erion DM, etal., J Biol Chem. 2013 May 31;288(22):16167-76. doi: 10.1074/jbc.M113.460246. Epub 2013 Apr 17.
2. CREB coactivator CRTC2/TORC2 and its regulator calcineurin crucially mediate follicle-stimulating hormone and transforming growth factor beta1 upregulation of steroidogenesis. Fang WL, etal., J Cell Physiol. 2012 Jun;227(6):2430-40. doi: 10.1002/jcp.22978.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Novel liver-specific TORC2 siRNA corrects hyperglycemia in rodent models of type 2 diabetes. Saberi M, etal., Am J Physiol Endocrinol Metab. 2009 Nov;297(5):E1137-46. doi: 10.1152/ajpendo.00158.2009. Epub 2009 Aug 25.
Additional References at PubMed
PMID:12477932   PMID:16148943   PMID:16308421   PMID:16684769   PMID:18086876   PMID:19056867   PMID:19381067   PMID:19713961   PMID:20688914   PMID:21083631   PMID:21121974   PMID:21679259  
PMID:21784900   PMID:22588126   PMID:22899279   PMID:23716698   PMID:24051374   PMID:24674967   PMID:24768298   PMID:24949720   PMID:25080490   PMID:26167077   PMID:26210066   PMID:26508620  


Genomics

Comparative Map Data
Crtc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,007,233 - 178,017,397 (+)NCBIGRCr8
mRatBN7.22175,709,603 - 175,719,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,709,644 - 175,719,763 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,849,796 - 182,859,389 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,872,186 - 180,881,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,472,464 - 175,482,053 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,615,928 - 189,625,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,615,948 - 189,626,051 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,048,916 - 209,058,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,496,762 - 182,506,348 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,446,728 - 182,456,828 (+)NCBI
Celera2169,645,106 - 169,654,562 (+)NCBICelera
Cytogenetic Map2q34NCBI
CRTC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,947,675 - 153,958,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,947,669 - 153,958,615 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,920,151 - 153,931,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,186,775 - 152,197,667 (-)NCBINCBI36Build 36hg18NCBI36
Celera1126,991,902 - 127,002,794 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,282,734 - 125,293,718 (-)NCBIHuRef
CHM1_11155,316,461 - 155,327,445 (-)NCBICHM1_1
T2T-CHM13v2.01153,084,936 - 153,095,873 (-)NCBIT2T-CHM13v2.0
Crtc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,161,475 - 90,171,432 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,161,470 - 90,171,432 (+)EnsemblGRCm39 Ensembl
GRCm38390,253,858 - 90,264,125 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,254,163 - 90,264,125 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,058,203 - 90,068,047 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,340,211 - 90,350,047 (+)NCBIMGSCv36mm8
Celera390,292,041 - 90,301,887 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.21NCBI
Crtc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545541,849 - 554,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545542,916 - 554,675 (-)NCBIChiLan1.0ChiLan1.0
CRTC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,175,349 - 43,184,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,175,349 - 43,184,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,665,758 - 42,674,629 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,045,782 - 43,054,654 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,045,872 - 43,054,649 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,824,451 - 42,833,322 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,877,726 - 42,886,616 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,161,959 - 43,170,830 (+)NCBIUU_Cfam_GSD_1.0
Crtc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,663,051 - 24,673,722 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,693,430 - 3,704,104 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,693,429 - 3,704,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRTC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,734,299 - 95,745,629 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,734,228 - 95,745,630 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,636,413 - 104,647,572 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRTC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,853,094 - 9,864,843 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,853,481 - 9,865,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,223,576 - 9,234,974 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crtc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,264,983 - 3,277,459 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,265,079 - 3,276,594 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Crtc2
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:216
Interacting mature miRNAs:242
Transcripts:ENSRNOT00000021700
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
61457Niddm8Non-insulin dependent diabetes mellitus QTL 84.10.01blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2174543008175950118Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat

Markers in Region
Crtc2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22175,718,177 - 175,719,708 (+)MAPPERmRatBN7.2
Rnor_6.02189,624,485 - 189,626,015NCBIRnor6.0
Rnor_5.02209,057,340 - 209,058,871UniSTSRnor5.0
Celera2169,653,401 - 169,654,931UniSTS
Cytogenetic Map2q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000092144   ⟹   ENSRNOP00000068813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,709,644 - 175,719,763 (+)Ensembl
Rnor_6.0 Ensembl2189,615,948 - 189,626,051 (+)Ensembl
RefSeq Acc Id: NM_001033895   ⟹   NP_001029067
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,274 - 178,017,397 (+)NCBI
mRatBN7.22175,709,645 - 175,719,768 (+)NCBI
Rnor_6.02189,616,061 - 189,625,646 (+)NCBI
Rnor_5.02209,048,916 - 209,058,502 (+)NCBI
RGSC_v3.42182,496,762 - 182,506,348 (+)RGD
Celera2169,645,106 - 169,654,562 (+)RGD
Sequence:
RefSeq Acc Id: XM_063281825   ⟹   XP_063137895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,243 - 178,017,397 (+)NCBI
RefSeq Acc Id: XM_063281826   ⟹   XP_063137896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,243 - 178,017,397 (+)NCBI
RefSeq Acc Id: XM_063281827   ⟹   XP_063137897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,243 - 178,017,397 (+)NCBI
RefSeq Acc Id: XM_063281828   ⟹   XP_063137898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,240 - 178,016,240 (+)NCBI
RefSeq Acc Id: XM_063281829   ⟹   XP_063137899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,233 - 178,015,888 (+)NCBI
RefSeq Acc Id: XR_010063607
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,007,240 - 178,016,574 (+)NCBI
RefSeq Acc Id: NP_001029067   ⟸   NM_001033895
- UniProtKB: Q3LRZ1 (UniProtKB/Swiss-Prot),   B4F7E3 (UniProtKB/TrEMBL),   A0A8L2R0S0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068813   ⟸   ENSRNOT00000092144
RefSeq Acc Id: XP_063137899   ⟸   XM_063281829
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063137898   ⟸   XM_063281828
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063137895   ⟸   XM_063281825
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137896   ⟸   XM_063281826
- Peptide Label: isoform X2
- UniProtKB: Q3LRZ1 (UniProtKB/Swiss-Prot),   B4F7E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137897   ⟸   XM_063281827
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3LRZ1-F1-model_v2 AlphaFold Q3LRZ1 1-691 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691499
Promoter ID:EPDNEW_R2023
Type:initiation region
Name:Crtc2_1
Description:CREB regulated transcription coactivator 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02189,615,952 - 189,616,012EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308903 AgrOrtholog
BioCyc Gene G2FUF-52359 BioCyc
Ensembl Genes ENSRNOG00000056337 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092144.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7129063 IMAGE-MGC_LOAD
InterPro TORC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TORC_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TORC_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TORC_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:310615 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:156510 IMAGE-MGC_LOAD
NCBI Gene 310615 ENTREZGENE
PANTHER CREB-REGULATED TRANSCRIPTION COACTIVATOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TORC_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TORC_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TORC_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crtc2 PhenoGen
RatGTEx ENSRNOG00000056337 RatGTEx
UniProt A0A8L2R0S0 ENTREZGENE, UniProtKB/TrEMBL
  A6J6L5_RAT UniProtKB/TrEMBL
  B4F7E3 ENTREZGENE, UniProtKB/TrEMBL
  CRTC2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Crtc2  CREB regulated transcription coactivator 2  RGD1308903  similar to 4632407F12Rik protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1308903  similar to 4632407F12Rik protein  RGD1308903_predicted  similar to 4632407F12Rik protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308903_predicted  similar to 4632407F12Rik protein (predicted)  LOC310615_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310615_predicted  similar to 4632407F12Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL