Lin37 (lin-37 DREAM MuvB core complex component) - Rat Genome Database

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Gene: Lin37 (lin-37 DREAM MuvB core complex component) Rattus norvegicus
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Symbol: Lin37
Name: lin-37 DREAM MuvB core complex component
RGD ID: 1308901
Description: Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within G0 to G1 transition and gene expression. Predicted to be part of Myb complex. Orthologous to human LIN37 (lin-37 DREAM MuvB core complex component); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: lin-37 homolog; lin-37 homolog (C. elegans); LOC292787; RGD1308901; similar to RIKEN cDNA 1810054G18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,936,512 - 94,940,444 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl194,936,512 - 94,940,444 (-)EnsemblGRCr8
mRatBN7.2185,809,065 - 85,813,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,809,074 - 85,812,991 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,225,801 - 91,229,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,691,966 - 99,695,886 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,984,081 - 92,988,001 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,010,254 - 89,014,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,010,257 - 89,014,189 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,165,072 - 90,169,231 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,601,215 - 85,605,147 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,180,589 - 80,184,521 (-)NCBICelera
RGSC_v3.1185,679,331 - 85,683,235 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Lin37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,936,512 - 94,940,444 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl194,936,512 - 94,940,444 (-)EnsemblGRCr8
mRatBN7.2185,809,065 - 85,813,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,809,074 - 85,812,991 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,225,801 - 91,229,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,691,966 - 99,695,886 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,984,081 - 92,988,001 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,010,254 - 89,014,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,010,257 - 89,014,189 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,165,072 - 90,169,231 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,601,215 - 85,605,147 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,180,589 - 80,184,521 (-)NCBICelera
RGSC_v3.1185,679,331 - 85,683,235 (-)NCBI
Cytogenetic Map1q21NCBI
LIN37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,748,576 - 35,754,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,748,361 - 35,754,519 (+)Ensemblhg38GRCh38
GRCh371936,239,477 - 36,245,420 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,931,352 - 40,937,260 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1932,952,989 - 32,958,898 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,744,250 - 32,750,415 (+)NCBIHuRef
CHM1_11936,240,571 - 36,246,733 (+)NCBICHM1_1
T2T-CHM13v2.01938,293,885 - 38,299,832 (+)NCBIT2T-CHM13v2.0
Lin37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,254,866 - 30,259,289 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,254,866 - 30,259,263 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38730,555,441 - 30,559,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,555,441 - 30,559,838 (-)Ensemblmm10GRCm38
MGSCv37731,340,460 - 31,344,665 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36730,264,201 - 30,268,406 (-)NCBIMGSCv36mm8
Celera725,147,203 - 25,151,408 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.58NCBI
Lin37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,799,641 - 2,804,462 (-)Ensembl
ChiLan1.0NW_0049554682,799,641 - 2,803,880 (-)NCBIChiLan1.0ChiLan1.0
LIN37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,742,819 - 41,748,797 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,728,143 - 43,734,123 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,678,141 - 32,684,305 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,412,445 - 41,418,608 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,412,809 - 41,418,563 (+)EnsemblpanPan2panpan1.1
LIN37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,880,910 - 116,886,056 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,880,914 - 116,885,987 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1116,286,170 - 116,291,316 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01117,483,886 - 117,489,031 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,483,890 - 117,489,221 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,047,262 - 117,052,407 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,670,880 - 116,676,028 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,726,260 - 117,731,408 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lin37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,070,177 - 11,074,736 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570567,860 - 575,788 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936570571,146 - 575,539 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIN37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,175,500 - 45,181,391 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1645,175,454 - 45,181,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,630,722 - 40,636,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIN37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,657,951 - 30,664,302 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660738,449,324 - 8,455,668 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lin37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,056,258 - 10,060,679 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479410,056,180 - 10,060,679 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lin37
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12165,450,125 - 165,454,302 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lin37
12 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:47
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000028413
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat

Markers in Region
RH128196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,808,803 - 85,808,994 (+)MAPPERmRatBN7.2
Rnor_6.0189,009,993 - 89,010,183NCBIRnor6.0
Rnor_5.0190,164,808 - 90,164,998UniSTSRnor5.0
RGSC_v3.4185,600,951 - 85,601,141UniSTSRGSC3.4
Celera180,180,325 - 80,180,515UniSTS
RH 3.4 Map1851.7UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000028413   ⟹   ENSRNOP00000028413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl194,936,512 - 94,940,444 (-)Ensembl
mRatBN7.2 Ensembl185,809,074 - 85,812,991 (-)Ensembl
Rnor_6.0 Ensembl189,010,257 - 89,014,189 (-)Ensembl
RefSeq Acc Id: NM_001106245   ⟹   NP_001099715
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,936,512 - 94,940,444 (-)NCBI
mRatBN7.2185,809,068 - 85,813,000 (-)NCBI
Rnor_6.0189,010,257 - 89,014,189 (-)NCBI
Rnor_5.0190,165,072 - 90,169,231 (-)NCBI
RGSC_v3.4185,601,215 - 85,605,147 (-)RGD
Celera180,180,589 - 80,184,521 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099715 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07746 (Get FASTA)   NCBI Sequence Viewer  
  EDM07747 (Get FASTA)   NCBI Sequence Viewer  
  EDM07748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028413
  ENSRNOP00000028413.6
RefSeq Acc Id: NP_001099715   ⟸   NM_001106245
- UniProtKB: A6J9Y6 (UniProtKB/TrEMBL),   D4A503 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028413   ⟸   ENSRNOT00000028413

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A503-F1-model_v2 AlphaFold D4A503 1-246 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689922
Promoter ID:EPDNEW_R445
Type:multiple initiation site
Name:Lin37_1
Description:lin-37 DREAM MuvB core complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,014,157 - 89,014,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308901 AgrOrtholog
BioCyc Gene G2FUF-60098 BioCyc
Ensembl Genes ENSRNOG00000020929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028413 ENTREZGENE
  ENSRNOT00000028413.7 UniProtKB/TrEMBL
InterPro LIN37 UniProtKB/TrEMBL
KEGG Report rno:292787 UniProtKB/TrEMBL
NCBI Gene 292787 ENTREZGENE
PANTHER PROTEIN LIN-37 HOMOLOG UniProtKB/TrEMBL
  PTHR31336 UniProtKB/TrEMBL
Pfam LIN37 UniProtKB/TrEMBL
PhenoGen Lin37 PhenoGen
RatGTEx ENSRNOG00000020929 RatGTEx
UniProt A6J9Y6 ENTREZGENE, UniProtKB/TrEMBL
  D4A503 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-23 Lin37  lin-37 DREAM MuvB core complex component  Lin37  lin-37 homolog (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Lin37  lin-37 homolog (C. elegans)  RGD1308901_predicted  similar to RIKEN cDNA 1810054G18 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1308901_predicted  similar to RIKEN cDNA 1810054G18 (predicted)  LOC292787_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292787_predicted  similar to RIKEN cDNA 1810054G18 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL