Osbpl6 (oxysterol binding protein-like 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Osbpl6 (oxysterol binding protein-like 6) Rattus norvegicus
Analyze
Symbol: Osbpl6
Name: oxysterol binding protein-like 6
RGD ID: 1308887
Description: Predicted to enable cholesterol binding activity. Predicted to be involved in regulation of cholesterol transport. Predicted to be located in early endosome membrane and endoplasmic reticulum membrane. Predicted to be active in several cellular components, including cytosol; nuclear membrane; and perinuclear endoplasmic reticulum. Orthologous to human OSBPL6 (oxysterol binding protein like 6); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC311129; oxysterol-binding protein-related protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8381,751,020 - 81,948,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl381,750,982 - 81,946,615 (+)EnsemblGRCr8
mRatBN7.2361,343,776 - 61,541,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,343,809 - 61,537,102 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx364,792,795 - 64,891,290 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0373,376,452 - 73,474,945 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,144,020 - 71,242,469 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0363,257,646 - 63,455,105 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,353,178 - 63,454,967 (+)Ensemblrn6Rnor6.0
Rnor_5.0369,831,007 - 70,028,482 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,190,488 - 59,288,770 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera360,925,035 - 61,023,211 (+)NCBICelera
RGSC_v3.1359,079,786 - 59,185,092 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gallic acid  (ISO)
genistein  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
propanal  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14593528   PMID:26941018  


Genomics

Comparative Map Data
Osbpl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8381,751,020 - 81,948,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl381,750,982 - 81,946,615 (+)EnsemblGRCr8
mRatBN7.2361,343,776 - 61,541,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,343,809 - 61,537,102 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx364,792,795 - 64,891,290 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0373,376,452 - 73,474,945 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,144,020 - 71,242,469 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0363,257,646 - 63,455,105 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,353,178 - 63,454,967 (+)Ensemblrn6Rnor6.0
Rnor_5.0369,831,007 - 70,028,482 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,190,488 - 59,288,770 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera360,925,035 - 61,023,211 (+)NCBICelera
RGSC_v3.1359,079,786 - 59,185,092 (+)NCBI
Cytogenetic Map3q24NCBI
OSBPL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,193,774 - 178,402,893 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,193,711 - 178,402,893 (+)Ensemblhg38GRCh38
GRCh372179,059,239 - 179,267,620 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362178,767,620 - 178,969,123 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342179,010,477 - 179,086,380NCBI
Celera2172,662,267 - 172,863,763 (+)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2170,930,068 - 171,134,835 (+)NCBIHuRef
CHM1_12179,065,294 - 179,270,178 (+)NCBICHM1_1
T2T-CHM13v2.02178,676,512 - 178,885,713 (+)NCBIT2T-CHM13v2.0
Osbpl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39276,236,848 - 76,430,991 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl276,236,852 - 76,430,991 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38276,406,504 - 76,600,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl276,406,508 - 76,600,647 (+)Ensemblmm10GRCm38
MGSCv37276,244,595 - 76,438,704 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36276,207,377 - 76,401,486 (+)NCBIMGSCv36mm8
Celera278,072,919 - 78,262,320 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.94NCBI
Osbpl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540318,448,537 - 18,572,721 (-)Ensembl
ChiLan1.0NW_00495540318,441,548 - 18,575,838 (-)NCBIChiLan1.0ChiLan1.0
OSBPL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21380,838,769 - 81,041,485 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B80,853,720 - 81,060,096 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B65,449,726 - 65,656,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B183,155,488 - 183,361,686 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B183,247,028 - 183,361,686 (+)EnsemblpanPan2panpan1.1
OSBPL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13621,872,934 - 22,024,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3621,908,947 - 22,021,426 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3621,892,449 - 22,043,257 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03622,016,989 - 22,168,309 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3622,051,679 - 22,164,707 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,126,718 - 22,277,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03622,089,669 - 22,240,525 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,205,208 - 22,356,553 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Osbpl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303138,861,008 - 139,056,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365097,414,769 - 7,613,622 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365097,414,887 - 7,610,412 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSBPL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1583,872,742 - 84,101,299 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11583,872,747 - 84,101,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21593,542,518 - 93,635,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSBPL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11063,744,984 - 63,954,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1063,860,341 - 63,950,870 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040135,620,068 - 135,826,088 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osbpl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624844174,068 - 380,699 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Osbpl6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1553,848,969 - 53,945,533 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Osbpl6
1504 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:66
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000068199
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 84 59 6 348 184 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068199   ⟹   ENSRNOP00000059467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,750,993 - 81,946,614 (+)Ensembl
mRatBN7.2 Ensembl361,347,795 - 61,537,102 (+)Ensembl
Rnor_6.0 Ensembl363,379,031 - 63,451,037 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091211   ⟹   ENSRNOP00000071146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,750,993 - 81,946,614 (+)Ensembl
mRatBN7.2 Ensembl361,343,809 - 61,537,053 (+)Ensembl
Rnor_6.0 Ensembl363,353,178 - 63,454,967 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109671   ⟹   ENSRNOP00000085530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,751,029 - 81,946,614 (+)Ensembl
mRatBN7.2 Ensembl361,343,809 - 61,537,053 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111872   ⟹   ENSRNOP00000095383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,750,993 - 81,946,614 (+)Ensembl
mRatBN7.2 Ensembl361,343,809 - 61,537,053 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112703   ⟹   ENSRNOP00000083910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,882,251 - 81,944,277 (+)Ensembl
mRatBN7.2 Ensembl361,475,021 - 61,537,102 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125272   ⟹   ENSRNOP00000110453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,750,993 - 81,946,614 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151334   ⟹   ENSRNOP00000112175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl381,750,982 - 81,946,615 (+)Ensembl
RefSeq Acc Id: NM_001107735   ⟹   NP_001101205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,846,031 - 81,944,319 (+)NCBI
mRatBN7.2361,438,805 - 61,537,102 (+)NCBI
Rnor_6.0363,352,972 - 63,451,037 (+)NCBI
Rnor_5.0369,831,007 - 70,028,482 (+)NCBI
RGSC_v3.4359,190,488 - 59,288,770 (+)RGD
Celera360,925,035 - 61,023,211 (+)RGD
Sequence:
RefSeq Acc Id: XM_008761904   ⟹   XP_008760126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,651 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761905   ⟹   XP_008760127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,651 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761906   ⟹   XP_008760128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,651 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761907   ⟹   XP_008760129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
mRatBN7.2361,343,776 - 61,520,593 (+)NCBI
Rnor_6.0363,257,646 - 63,434,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591693   ⟹   XP_017447182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,778 - 61,541,170 (+)NCBI
Rnor_6.0363,257,650 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591694   ⟹   XP_017447183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,024 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,650 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591695   ⟹   XP_017447184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,651 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591696   ⟹   XP_017447185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,778 - 61,541,170 (+)NCBI
Rnor_6.0363,257,650 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591697   ⟹   XP_017447186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,650 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591698   ⟹   XP_017447187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
Rnor_6.0363,257,651 - 63,455,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104857   ⟹   XP_038960785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,778 - 61,541,170 (+)NCBI
RefSeq Acc Id: XM_039104858   ⟹   XP_038960786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
mRatBN7.2361,343,779 - 61,541,170 (+)NCBI
RefSeq Acc Id: XM_063283625   ⟹   XP_063139695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,882,197 - 81,948,186 (+)NCBI
RefSeq Acc Id: XM_063283626   ⟹   XP_063139696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,882,197 - 81,948,186 (+)NCBI
RefSeq Acc Id: XM_063283627   ⟹   XP_063139697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,948,186 (+)NCBI
RefSeq Acc Id: XM_063283628   ⟹   XP_063139698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283629   ⟹   XP_063139699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,882,033 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283630   ⟹   XP_063139700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283631   ⟹   XP_063139701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283632   ⟹   XP_063139702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,882,035 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283633   ⟹   XP_063139703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
RefSeq Acc Id: XM_063283634   ⟹   XP_063139704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8381,751,020 - 81,927,812 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101205 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418626 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418627 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418628 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418629 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418630 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418631 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418632 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418633 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418634 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418635 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418636 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418637 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760126 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760127 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760128 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760129 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447182 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447183 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447184 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447185 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447186 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960785 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139695 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139696 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139697 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139699 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139700 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139701 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139702 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139703 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139704 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79225 (Get FASTA)   NCBI Sequence Viewer  
  EDL79226 (Get FASTA)   NCBI Sequence Viewer  
  EDL79227 (Get FASTA)   NCBI Sequence Viewer  
  EDL79228 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059467
  ENSRNOP00000059467.2
  ENSRNOP00000071146
  ENSRNOP00000071146.3
  ENSRNOP00000083910
  ENSRNOP00000083910.1
  ENSRNOP00000085530
  ENSRNOP00000085530.1
  ENSRNOP00000095383
  ENSRNOP00000095383.2
  ENSRNOP00000110453
  ENSRNOP00000110453.1
  ENSRNOP00000112175
  ENSRNOP00000112175.1
RefSeq Acc Id: NP_001101205   ⟸   NM_001107735
- UniProtKB: A6HMH5 (UniProtKB/TrEMBL),   A6HMH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760126   ⟸   XM_008761904
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008760127   ⟸   XM_008761905
- Peptide Label: isoform X10
- UniProtKB: A6HMH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760128   ⟸   XM_008761906
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008760129   ⟸   XM_008761907
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017447183   ⟸   XM_017591694
- Peptide Label: isoform X1
- UniProtKB: D4A0F3 (UniProtKB/TrEMBL),   A6HMH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447182   ⟸   XM_017591693
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447185   ⟸   XM_017591696
- Peptide Label: isoform X3
- UniProtKB: A6HMH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447186   ⟸   XM_017591697
- Peptide Label: isoform X5
- UniProtKB: A6HMH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447184   ⟸   XM_017591695
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017447187   ⟸   XM_017591698
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSRNOP00000071146   ⟸   ENSRNOT00000091211
Ensembl Acc Id: ENSRNOP00000059467   ⟸   ENSRNOT00000068199
RefSeq Acc Id: XP_038960785   ⟸   XM_039104857
- Peptide Label: isoform X8
- UniProtKB: A6HMH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960786   ⟸   XM_039104858
- Peptide Label: isoform X12
- UniProtKB: A6HMH4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085530   ⟸   ENSRNOT00000109671
Ensembl Acc Id: ENSRNOP00000095383   ⟸   ENSRNOT00000111872
Ensembl Acc Id: ENSRNOP00000083910   ⟸   ENSRNOT00000112703
RefSeq Acc Id: XP_063139697   ⟸   XM_063283627
- Peptide Label: isoform X13
- UniProtKB: A0A8I6A0D2 (UniProtKB/TrEMBL),   A6HMH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139698   ⟸   XM_063283628
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063139700   ⟸   XM_063283630
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063139701   ⟸   XM_063283631
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063139703   ⟸   XM_063283633
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063139704   ⟸   XM_063283634
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063139699   ⟸   XM_063283629
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063139702   ⟸   XM_063283632
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063139695   ⟸   XM_063283625
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139696   ⟸   XM_063283626
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000112175   ⟸   ENSRNOT00000151334
Ensembl Acc Id: ENSRNOP00000110453   ⟸   ENSRNOT00000125272
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZR1-F1-model_v2 AlphaFold A0A0G2JZR1 1-959 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308887 AgrOrtholog
BioCyc Gene G2FUF-49280 BioCyc
Ensembl Genes ENSRNOG00000010812 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068199 ENTREZGENE
  ENSRNOT00000068199.4 UniProtKB/TrEMBL
  ENSRNOT00000091211 ENTREZGENE
  ENSRNOT00000091211.3 UniProtKB/TrEMBL
  ENSRNOT00000109671 ENTREZGENE
  ENSRNOT00000109671.2 UniProtKB/TrEMBL
  ENSRNOT00000111872 ENTREZGENE
  ENSRNOT00000111872.2 UniProtKB/TrEMBL
  ENSRNOT00000112703 ENTREZGENE
  ENSRNOT00000112703.2 UniProtKB/TrEMBL
  ENSRNOT00000125272 ENTREZGENE
  ENSRNOT00000125272.1 UniProtKB/TrEMBL
  ENSRNOT00000151334 ENTREZGENE
  ENSRNOT00000151334.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.40.160.120 UniProtKB/TrEMBL
  3.30.70.3490 UniProtKB/TrEMBL
InterPro OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
KEGG Report rno:311129 UniProtKB/TrEMBL
NCBI Gene 311129 ENTREZGENE
PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 6 UniProtKB/TrEMBL
  Oxysterol_bd UniProtKB/TrEMBL
Pfam Oxysterol_BP UniProtKB/TrEMBL
  PH_8 UniProtKB/TrEMBL
PhenoGen Osbpl6 PhenoGen
PROSITE OSBP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010812 RatGTEx
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF144000 UniProtKB/TrEMBL
UniProt A0A0G2JZR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZY24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0D2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMF4_RAT UniProtKB/TrEMBL
  A0ABK0M4R3_RAT UniProtKB/TrEMBL
  A6HMH4 ENTREZGENE, UniProtKB/TrEMBL
  A6HMH5 ENTREZGENE, UniProtKB/TrEMBL
  D4A0F3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Osbpl6  oxysterol binding protein-like 6   Osbpl6_predicted  oxysterol binding protein-like 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Osbpl6_predicted  oxysterol binding protein-like 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED