Mcoln2 (mucolipin TRP cation channel 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mcoln2 (mucolipin TRP cation channel 2) Rattus norvegicus
Analyze
Symbol: Mcoln2
Name: mucolipin TRP cation channel 2
RGD ID: 1308884
Description: Predicted to enable NAADP-sensitive calcium-release channel activity; identical protein binding activity; and iron ion transmembrane transporter activity. Predicted to be involved in calcium-mediated signaling and iron ion transmembrane transport. Predicted to act upstream of or within myeloid leukocyte migration and positive regulation of chemokine production. Predicted to be located in recycling endosome. Predicted to be active in membrane. Orthologous to human MCOLN2 (mucolipin TRP cation channel 2); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC292168; MGC124828; mucolipin 2; mucolipin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,714,100 - 237,762,979 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2237,714,084 - 237,762,978 (+)EnsemblGRCr8
mRatBN7.22235,053,816 - 235,102,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,053,816 - 235,102,702 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2242,843,483 - 242,892,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02240,734,735 - 240,783,786 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,601,104 - 235,650,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02252,018,594 - 252,068,209 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,018,597 - 252,068,271 (+)Ensemblrn6Rnor6.0
Rnor_5.02270,540,814 - 270,589,451 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42244,323,411 - 244,385,583 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,034,241 - 227,082,591 (+)NCBICelera
RGSC_v3.12244,326,614 - 244,371,707 (+)NCBI
Cytogenetic Map2q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
bromobenzene  (EXP)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
dexamethasone  (EXP)
dieldrin  (ISO)
dioxygen  (ISO)
endosulfan  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gardiquimod  (ISO)
genistein  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methcathinone  (ISO)
methyl methanesulfonate  (ISO)
nickel sulfate  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:26432893  


Genomics

Comparative Map Data
Mcoln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,714,100 - 237,762,979 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2237,714,084 - 237,762,978 (+)EnsemblGRCr8
mRatBN7.22235,053,816 - 235,102,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,053,816 - 235,102,702 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2242,843,483 - 242,892,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02240,734,735 - 240,783,786 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,601,104 - 235,650,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02252,018,594 - 252,068,209 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,018,597 - 252,068,271 (+)Ensemblrn6Rnor6.0
Rnor_5.02270,540,814 - 270,589,451 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42244,323,411 - 244,385,583 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,034,241 - 227,082,591 (+)NCBICelera
RGSC_v3.12244,326,614 - 244,371,707 (+)NCBI
Cytogenetic Map2q44NCBI
MCOLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38184,925,583 - 84,997,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl184,925,583 - 84,997,115 (-)Ensemblhg38GRCh38
GRCh37185,391,266 - 85,462,796 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36185,163,854 - 85,235,384 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34185,103,287 - 85,174,817NCBI
Celera183,635,160 - 83,706,701 (-)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef183,501,272 - 83,572,477 (-)NCBIHuRef
CHM1_1185,506,121 - 85,577,633 (-)NCBICHM1_1
T2T-CHM13v2.0184,766,210 - 84,837,786 (-)NCBIT2T-CHM13v2.0
Mcoln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393145,855,552 - 145,901,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3145,855,588 - 145,901,268 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383146,149,796 - 146,195,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3146,149,833 - 146,195,513 (+)Ensemblmm10GRCm38
MGSCv373145,812,797 - 145,858,476 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363146,087,229 - 146,132,898 (+)NCBIMGSCv36mm8
Celera3152,597,587 - 152,645,127 (+)NCBICelera
Cytogenetic Map3H2NCBI
cM Map371.03NCBI
Mcoln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554238,978,226 - 9,037,174 (+)Ensembl
ChiLan1.0NW_0049554238,977,210 - 9,037,110 (+)NCBIChiLan1.0ChiLan1.0
MCOLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21141,938,347 - 142,018,835 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11141,093,585 - 141,171,845 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,473,542 - 117,552,814 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,333,534 - 86,409,043 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,333,534 - 86,409,043 (-)EnsemblpanPan2panpan1.1
MCOLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1662,956,797 - 63,008,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl662,956,804 - 63,200,612 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha665,604,897 - 65,656,536 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0663,494,889 - 63,546,421 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl663,494,883 - 63,546,415 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1663,021,712 - 63,076,135 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0662,992,176 - 63,043,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0663,500,378 - 63,551,982 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mcoln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505895,561,224 - 95,614,704 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936608690,253 - 744,001 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936608690,253 - 744,803 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCOLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6128,776,430 - 128,836,951 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16128,772,904 - 128,836,958 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26119,212,679 - 119,272,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MCOLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12048,355,014 - 48,435,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2048,376,004 - 48,426,171 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603369,343,923 - 69,413,062 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcoln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474212,527,608 - 12,591,518 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474212,527,562 - 12,591,797 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mcoln2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1314,705,809 - 14,752,963 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mcoln2
371 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:68
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000020452
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
RH134845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,102,484 - 235,102,675 (+)MAPPERmRatBN7.2
Rnor_6.02252,067,991 - 252,068,181NCBIRnor6.0
Rnor_5.02270,589,233 - 270,589,423UniSTSRnor5.0
RGSC_v3.42244,385,365 - 244,385,555UniSTSRGSC3.4
Celera2227,082,373 - 227,082,563UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 9 34 119 88 90 59 91 59 6 313 153 11 95 78 90 31 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000020452   ⟹   ENSRNOP00000020452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2237,714,084 - 237,762,978 (+)Ensembl
mRatBN7.2 Ensembl2235,053,816 - 235,102,702 (+)Ensembl
Rnor_6.0 Ensembl2252,018,597 - 252,068,271 (+)Ensembl
RefSeq Acc Id: NM_001039005   ⟹   NP_001034094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82237,714,100 - 237,762,979 (+)NCBI
mRatBN7.22235,053,816 - 235,102,703 (+)NCBI
Rnor_6.02252,018,594 - 252,068,209 (+)NCBI
Rnor_5.02270,540,814 - 270,589,451 (+)NCBI
RGSC_v3.42244,323,411 - 244,385,583 (+)RGD
Celera2227,034,241 - 227,082,591 (+)RGD
Sequence:
RefSeq Acc Id: XM_039101881   ⟹   XP_038957809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82237,723,352 - 237,762,979 (+)NCBI
mRatBN7.22235,063,066 - 235,102,703 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034094 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957809 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020452
  ENSRNOP00000020452.5
RefSeq Acc Id: NP_001034094   ⟸   NM_001039005
- UniProtKB: Q499S1 (UniProtKB/TrEMBL),   A6HWD2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020452   ⟸   ENSRNOT00000020452
RefSeq Acc Id: XP_038957809   ⟸   XM_039101881
- Peptide Label: isoform X1
- UniProtKB: A6HWD2 (UniProtKB/TrEMBL)
Protein Domains
Mucolipin extracytosolic   Polycystin cation channel PKD1/PKD2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q499S1-F1-model_v2 AlphaFold Q499S1 1-566 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691812
Promoter ID:EPDNEW_R2337
Type:single initiation site
Name:Mcoln2_1
Description:mucolipin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02252,018,578 - 252,018,638EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308884 AgrOrtholog
BioCyc Gene G2FUF-50906 BioCyc
Ensembl Genes ENSRNOG00000015089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020452 ENTREZGENE
  ENSRNOT00000020452.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7934506 IMAGE-MGC_LOAD
InterPro MCLN_ECD UniProtKB/TrEMBL
  Mucolipin UniProtKB/TrEMBL
  PKD1_2_channel UniProtKB/TrEMBL
KEGG Report rno:292168 UniProtKB/TrEMBL
MGC_CLONE MGC:124828 IMAGE-MGC_LOAD
NCBI Gene 292168 ENTREZGENE
PANTHER MUCOLIPIN-2 UniProtKB/TrEMBL
  PTHR12127 UniProtKB/TrEMBL
Pfam MCLN_ECD UniProtKB/TrEMBL
  PKD_channel UniProtKB/TrEMBL
PhenoGen Mcoln2 PhenoGen
RatGTEx ENSRNOG00000015089 RatGTEx
UniProt A6HWD2 ENTREZGENE, UniProtKB/TrEMBL
  Q499S1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-12 Mcoln2  mucolipin TRP cation channel 2  Mcoln2  mucolipin 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Mcoln2  mucolipin 2  Mcoln2_predicted  mucolipin 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mcoln2_predicted  mucolipin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED