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Gene: Map7 (microtubule-associated protein 7) Rattus norvegicus

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Symbol:

Map7

Name:

microtubule-associated protein 7

RGD ID:

1308866

Description:

Predicted to enable signaling receptor binding activity. Predicted to be involved in microtubule cytoskeleton organization and protein localization to plasma membrane. Predicted to act upstream of or within several processes, including glycosphingolipid metabolic process; male gonad development; and response to retinoic acid. Predicted to be located in plasma membrane. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7 (microtubule associated protein 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ensconsin; LOC293016; Mtap7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MAP7 (microtubule associated protein 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Map7 (microtubule-associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Map7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MAP7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MAP7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Map7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MAP7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MAP7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Map7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Map7 (microtubule associated protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MAP7 (microtubule associated protein 7)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Map7 (microtubule-associated protein 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Map7 (microtubule-associated protein 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	map7a (microtubule-associated protein 7a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	map7b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	map7b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	map7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	map7	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	16,730,000 - 16,857,173 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	16,730,075 - 16,857,170 (+)	Ensembl				GRCr8
mRatBN7.2	1	14,910,433 - 15,037,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	14,910,551 - 15,037,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	14,664,530 - 14,792,774 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	20,666,457 - 20,794,703 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	14,890,419 - 15,017,466 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	15,620,665 - 15,748,203 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	15,620,653 - 15,748,203 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	17,189,224 - 17,293,867 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	15,440,422 - 15,553,260 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	13,364,562 - 13,469,230 (+)	NCBI		Celera
RGSC_v3.1	1	15,505,838 - 15,553,312 (+)	NCBI
Cytogenetic Map	1	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

colforsin daropate hydrochloride (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

etoposide (ISO)

fenvalerate (EXP)

flutamide (EXP)

FR900359 (ISO)

furfural (ISO)

gentamycin (EXP)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

lead(0) (ISO)

manganese(II) chloride (EXP)

medroxyprogesterone acetate (ISO)

mercury dibromide (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

mitomycin C (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

SB 431542 (ISO)

senecionine (ISO)

sevoflurane (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell morphogenesis (ISO)

cell population proliferation (ISO)

fertilization (ISO)

germ cell development (ISO)

glycosphingolipid metabolic process (ISO)

homeostasis of number of cells (ISO)

Leydig cell differentiation (ISO)

microtubule bundle formation (ISO)

microtubule cytoskeleton organization (IBA,IEA)

nucleus organization (ISO)

organ growth (ISO)

protein localization to plasma membrane (ISO)

response to osmotic stress (ISO)

response to retinoic acid (ISO)

Sertoli cell development (ISO)

spermatogenesis (ISO)

Cellular Component

axon (IDA)

cytoskeleton (IEA)

cytosol (ISO)

microtubule cytoskeleton (IBA,IEA,ISO)

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

signaling receptor binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons.	Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10837026	PMID:14517216	PMID:18308723	PMID:25931508	PMID:28069923	PMID:30132755

Genomics

Comparative Map Data

Map7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	16,730,000 - 16,857,173 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	16,730,075 - 16,857,170 (+)	Ensembl				GRCr8
mRatBN7.2	1	14,910,433 - 15,037,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	14,910,551 - 15,037,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	14,664,530 - 14,792,774 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	20,666,457 - 20,794,703 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	14,890,419 - 15,017,466 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	15,620,665 - 15,748,203 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	15,620,653 - 15,748,203 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	17,189,224 - 17,293,867 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	15,440,422 - 15,553,260 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	13,364,562 - 13,469,230 (+)	NCBI		Celera
RGSC_v3.1	1	15,505,838 - 15,553,312 (+)	NCBI
Cytogenetic Map	1	p12	NCBI

MAP7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	136,342,734 - 136,550,422 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	136,342,281 - 136,550,819 (-)	Ensembl			hg38	GRCh38
GRCh37	6	136,663,872 - 136,871,560 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	136,705,565 - 136,913,485 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	136,705,565 - 136,913,485	NCBI
Celera	6	137,404,328 - 137,612,277 (-)	NCBI		Celera
Cytogenetic Map	6	q23.3	NCBI
HuRef	6	134,227,897 - 134,436,269 (-)	NCBI		HuRef
CHM1_1	6	136,925,972 - 137,134,594 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	137,530,867 - 137,738,614 (-)	NCBI		T2T-CHM13v2.0

Map7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	20,024,666 - 20,157,336 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	20,024,217 - 20,157,336 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	20,148,920 - 20,281,590 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	20,148,471 - 20,281,590 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	19,868,726 - 20,001,396 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	19,838,430 - 19,970,122 (+)	NCBI		MGSCv36	mm8
Celera	10	20,035,994 - 20,170,438 (+)	NCBI		Celera
Cytogenetic Map	10	A3	NCBI
cM Map	10	9.75	NCBI

Map7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955439	404,212 - 548,732 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAP7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	156,309,178 - 156,520,010 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	154,207,905 - 154,417,231 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	134,102,927 - 134,312,296 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	138,193,074 - 138,401,302 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

MAP7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	28,933,422 - 29,101,944 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	28,934,761 - 29,101,896 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	29,812,265 - 29,984,694 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	29,089,524 - 29,262,570 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	29,089,108 - 29,262,496 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	28,975,666 - 29,148,139 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	28,860,490 - 29,033,011 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	29,159,126 - 29,332,118 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Map7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	124,031,925 - 124,178,791 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936560	3,816,209 - 3,872,488 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936560	3,811,021 - 3,958,007 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAP7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	27,606,036 - 27,782,747 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	27,606,021 - 27,782,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	31,195,099 - 31,237,583 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAP7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	36,863,546 - 37,073,861 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	36,888,942 - 37,075,818 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	9,047,411 - 9,259,093 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Map7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624886	1,216,878 - 1,360,123 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624886	1,194,440 - 1,359,644 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Map7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	216,319,492 - 216,421,719 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Map7
1220 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	34
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000017401
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	26564886	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	1	26564886	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	1	28483164	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

D1Got17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	15,734,553 - 15,734,819	NCBI	Rnor6.0
Rnor_5.0	1	17,280,289 - 17,280,483	UniSTS	Rnor5.0
RGSC_v3.4	1	15,539,415 - 15,539,874	UniSTS	RGSC3.4
RGSC_v3.1	1	15,539,476 - 15,539,936	RGD
RH 3.4 Map	1	147.11	RGD
RH 3.4 Map	1	147.11	UniSTS
RH 2.0 Map	1	66.6	RGD
Cytogenetic Map	1	p12	UniSTS

RH137465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	15,019,898 - 15,020,082 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	15,730,528 - 15,730,711	NCBI	Rnor6.0
Rnor_5.0	1	17,276,264 - 17,276,447	UniSTS	Rnor5.0
RGSC_v3.4	1	15,535,390 - 15,535,573	UniSTS	RGSC3.4
Cytogenetic Map	1	p12	UniSTS

RH141937

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	15,037,118 - 15,037,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	15,747,748 - 15,747,937	NCBI	Rnor6.0
Rnor_5.0	1	17,293,412 - 17,293,601	UniSTS	Rnor5.0
RGSC_v3.4	1	15,552,803 - 15,552,992	UniSTS	RGSC3.4
Celera	1	13,468,775 - 13,468,964	UniSTS
RH 3.4 Map	1	150.01	UniSTS
Cytogenetic Map	1	p12	UniSTS

BF409316

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	15,008,979 - 15,009,183 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	15,719,609 - 15,719,812	NCBI	Rnor6.0
Rnor_5.0	1	17,265,345 - 17,265,548	UniSTS	Rnor5.0
RGSC_v3.4	1	15,524,471 - 15,524,674	UniSTS	RGSC3.4
Celera	1	13,441,628 - 13,441,831	UniSTS
Cytogenetic Map	1	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
23	13	80	211	91	90	59	128	59	6	454	248	19	190	116	124	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001198638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BP492816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB767890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK474097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK480167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV119382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017401 ⟹ ENSRNOP00000017401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,730,075 - 16,857,162 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,910,551 - 15,037,567 (+)	Ensembl
Rnor_6.0 Ensembl	1	15,620,653 - 15,748,196 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079845 ⟹ ENSRNOP00000075655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,786,513 - 16,857,170 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,988,622 - 15,037,574 (+)	Ensembl
Rnor_6.0 Ensembl	1	15,642,153 - 15,748,203 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093834 ⟹ ENSRNOP00000093910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,751,405 - 16,854,016 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,931,829 - 15,036,238 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094977 ⟹ ENSRNOP00000093262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,730,075 - 16,857,162 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,966,730 - 15,037,574 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095682 ⟹ ENSRNOP00000080477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	14,910,551 - 14,993,083 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096725 ⟹ ENSRNOP00000079962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,730,075 - 16,857,162 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,988,622 - 15,037,574 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098943 ⟹ ENSRNOP00000093069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,808,228 - 16,855,696 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,989,812 - 15,036,238 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099073 ⟹ ENSRNOP00000080280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,809,397 - 16,854,016 (+)	Ensembl
mRatBN7.2 Ensembl	1	14,988,895 - 15,036,238 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102172 ⟹ ENSRNOP00000082101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	14,988,622 - 15,011,556 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126107 ⟹ ENSRNOP00000099528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,750,986 - 16,857,170 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139018 ⟹ ENSRNOP00000098641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	16,730,127 - 16,857,166 (+)	Ensembl

RefSeq Acc Id:

NM_001106270 ⟹ NP_001099740

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,751,405 - 16,857,173 (+)	NCBI
mRatBN7.2	1	14,931,829 - 15,037,574 (+)	NCBI
Rnor_6.0	1	15,642,153 - 15,748,203 (+)	NCBI
Rnor_5.0	1	17,189,224 - 17,293,867 (+)	NCBI
RGSC_v3.4	1	15,440,422 - 15,553,260 (+)	RGD
Celera	1	13,364,562 - 13,469,230 (+)	NCBI

Sequence:

show sequence

GAGTTGCCAAGTAGCTGGTAGTATCTGTCAGCTGCTTGCACACTGTTTACCCACAGGGGATCTG
TTACAAGTGCTCAAATGAACAGGCAGCTTAGGAACTAGCAGCTTCCTGGGAGCTGCAATTACAT
AAGCATATATATTTAATATAATTGTGGGACAAGTAGCAGCGTTATGCCTGGATCAGCCACAGCT
ATCCGACAAGAGAGATTGAAGACGACCCACTCGAGGACTATTCCCCTCGTTCTGTTCACCATTA
ATGAGGAAGATGAGCTGCAAAAGAATGGAAATTCCAGAAGACCCAAAGCGTCTGATGGCTATAA
AATACAAGGAAAGAGACCTGCCCCCAGCCGCCCTACTTCCACACTTTCAGGACAAACGAGCAAC
CACTCAGGAAATAAACCAGATCCCCCACCTGTGCTACGGGTTGATGACCGGCAGCGTCTGGCCA
GAGAACGCCGTGAGGAACGAGAAAAACAGCTAGCTGCACGAGAAACCGTCTGGCTAGAGAGAGA
AGAGCGAGCCCGGCAGCACTATGAGAGGCACCTGGAGGCACGGAAGAAGAAGCTGGAGGACCAG
CGGCTGAAGGAGGAGCGGAGGAGAGCTGCGGTGGAGGAGAAGCGGAGACAGAGGCTGGAGGAGG
ACAAGGAGCGCCATGAAGCTGTTGTTCGGCGGACGATGGAAAGGAGCCAGAAGCCGAAGCAGAA
GTATAACCGGTGGTCGTGGGGAAGCCCTCTCCACGGGAGCTCTAGCATTCACAGTGGAGATCCA
GACAGGCGGTCAGTTTCCACCATGAATCTTTCGAAACATGTCGATCCTGTCATTAGCAAGCGGC
TCTCGTCCTCATCTGCAACTTTGCTAAACTCTCCAGATAGAGCTCGCCGCCTGCAGCTCAGCCC
CTGGGAGAGCAGCGTTGTTAGCAGACTTCTGACGCCCACACATTCGTTCCTGGCCAGAAGCAAA
AGCACGGCCGCCTTGTCTGGAGACACAGCATCTTGCAGCCCCATCACCACGCCCTTCAAAACTG
CACACTCTAGAAACCCAGTGGATCGACCAAAACTCTTTATAACGCCGCCCGAGGGCTCTGCTCG
GAGGAGGACCATTCACGGGATATCGAGCTATAAAAGAGAACGAGAACACATTCCCTTCCACGTT
TCCCCTGGTGTCCGAAGGACTCTGTCTCCATCTAATCTCAAGGCGAGATCCCCAGCTCCAGCCC
GCCTTTGGCCCCCATCCAAGTCCATGCCTCATCTGCCCGGGACACCCCGACCGGCATCCTCCTT
GACTCCTGGCCCCGTCAGAGCTGCTGCTTCTTCCTCGTCTCCTGGCAACATCCGCCCTGTCAAG
AGAGAAGTGAAAGTGGAGCCTGAGAAAAAAGACCCCGAGAAGAAAGTGACCAATGACCCCACAA
TAAAGGGCAGGGTGCCATTAGTGAAGGTGGAGGAGGGCACAGTTGAAGAGGGGACACCCGTGAA
GCCACCTGACCCTGGTAAGAATGGACCAGCTGCTGTTCCAGCCCCCACTCCAGCGACGGACCCA
GCCCCAGCACCACCATCACCATCCTCTGTGAGTGTCGGTGTAATTCCTAAGACTTCTGCAGGCA
CCACTGACCCAGAAGAGGCTACGAGGCTGCTGGCTGAGAAGAGGCGTCTAGCCAGAGAGCAAAG
GGAGAAGGAAGAAAGGGAGAGGAAGGAGAAGGAAGAGCTGGAGAGACAAAAGATAGAGGAATTG
GCGCGAAGGGTGGCTGAAGAGCGAAGTCGCAGGGAAGAGGAAGCGCGCAGGCTGGAAGCTGAGC
AGGCGCGCAAGAGAGAGGAGCTGGCGCTGCGTCTGGCTGAAGAGGAGCGGGAGCGGTGGGAGAG
GGAGGAGGTGGAGCGCGCACAGAAGCAGAAAGAAGAAGAAGCCCGAGCCCGGGAGGAGGCAGAG
AAGGCTCGGCAGGAACGAGAGAAACATTTTCAGAAAGAAGAGCAGGAGCGCCTGGAGAGGAAGA
AGCGACTTGAAGAGATCATGAGAAGAACCAGAAGGACAGAGACAGCGGATAAGAAAACCACTGG
GCAAAGCAATGGCGACATGGTCAAAGGAGTTCTCGCCGGAGAGACAGAGGTATCTGCCCTGCCA
GGTGTGAACTCTCCAGGACATGTCGAGTCTGCAGGCAGCACACATGGAGTGGCTTTGCAGCAAT
CAAAAGTGACCATAGAGAGTTCTCCAGATTTGGAGAAGCAGCCAAATGAAAATGGAATGTCCAC
ACAAAATGAAAATTTTGAAGAAATTATAAACTTACCTGTTGGATCAAAAGCATCCAGATTAGAC
GTCTCCAATGAGAACCCAGAAATTCCCTTGAAACCAATTTTGGCCTTTAATGATGAAGGGACAC
TTGGGCCCCTACCTCAGGTGGATGGTGTGCAGACACAACAGACCACAGAAGTTATATGAGCGTT
TCCTCTGAAGAACCAAAGCAAACATTTTCTACGACGAATGGAATTTCAGGCTCCAAAGAGCCCC
TCCCTCCAGTTTCCTAGAGTTCTTGACCATCATTTTTAAAAGACGTATTAAAGTCAGCTCAAGA
CAACAGACTCAGTAGCTTTTCTAACCATTTTCGCCAATAGGAAGAAATGCTCCTTAATGCTCCT
TAATCTGATACCCTGAGGTGGCATTTTCCAGAATGTCCCTCCTTAGTAAATAAATCAATATTTT
TCTGAACTCTTTCAAAAAACAAAAAGAGCATTTCATTATAAAAAGAAACGGGCATGGTTATCAC
AGGGATCTTTTTTTTTTTTTTTCACTTTTAAACTTCAATACATAAGATTGGCAAAAATAAAATA
CCTTTTACAACGTACTACTTGACAATGGGTACCTCTTTGCCCTCCGGGTGGAGCGAGTGGAGGG
TAGTCAAACAAACCTGTTTGTTTAAATATTACTGCAAAGGCAGTTTGTAGAGGCAGAAGGTGGC
CAGGTTACCTGGCCGTCATAAACACAGCTCGTAAACACGGGCATCCTGCAGACCCAGCTGCCAC
TGTCTTCCTGAGACTCCATTTACAGAACCACAATGACAACTCTGAAAATGTGAAGACATTTTTT
TCAGAGCAAGAAAATAATTCGCTGTCCTTTTTGTTTTTGTTTTTCCTACTTTTTTTGGAGAATG
GGTTTCTCTGTGTAGCCCTGGCTGTCCTAAAACTGGCTCTGGAGACCAGACTGACCTCGAACCC
CACCTGCCTCTGCTTCCTGGGTGCTGAGATCAGAGGCGCGCGACAGCCCCGCCTGGCTCAGCTG
TCCTCCTAAGCGATGTATTTATAAGAGCTTTTTTCCAGATAGATGAACTAGAACGGGACAGAGT
GCAGACACGCTCCAGCAGATGCACTCCGCCTGCCGCCCTGGGAGCCTGGATGATGATGTGGGGC
TCTCTGATGTCTGTATGCTGCTGCCACCCCCAGGGATGGTGGGACTTCTCTCTCTTTGCCTTAC
GTGATTGCAGATGATGTGGGGGAAATGTTTAATATTCCTTTAGATCAATGAATTTGGCTTCTGC
TCGTTTCAGAGCAATGAGAAAAAATGGTGTCGATGTCGGGGGACACGGACCGTCGCAAATGTCC
TCAGTGTATAGCGACCCTCCGCTTTTCCTGTGTCCTCCTTCTTCCCTCTTGCTGCTCAGCCCAG
CTGTACAAACCTGCACTTTGATTTGCTAATATAAATTCAGTTTTATTTTCCCACTTAAGAGACA
ACCAATGAGAAATGGAGAAGGGAGTGCCGAGGCCATGGCGTCTCCCTCCCACTGTGATATATTG
GTTTTATACAAAGAGCGATTGGTTAATCTACAAGATTTAATGTGGAACTATTCATCTATTGGGG
TTCTTTTAAATCCAGGCATACAATCTTTACCAACAGTTTGTAAAACATTGTTAAGACATCAATT
TGTGGGGTCTCCCCATTTGGTTGTCCATGTACATCTAGATATTGTATTAAAAAAAATCTGTTCA
ACAAATTTGTTCTATTTATTTAAATCTACCAAACATAAAATACAAATAAAATGTTTGACATAGT
TTTGCC

hide sequence

RefSeq Acc Id:

NM_001198638 ⟹ NP_001185567

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,730,127 - 16,857,166 (+)	NCBI
mRatBN7.2	1	14,910,551 - 15,037,567 (+)	NCBI
Rnor_6.0	1	15,620,665 - 15,748,196 (+)	NCBI
Rnor_5.0	1	17,189,224 - 17,293,867 (+)	NCBI
Celera	1	13,425,597 - 13,469,223 (+)	NCBI

Sequence:

show sequence

CCACGCGTCCGCCATGGCGGAGCAGGGAGCTGGAGGCGACGGCCACAGGGGTGGCGACGGCGCT
ACGCAGAGCGACCCAGCGTCTGATGGCTATAAAATACAAGGAAAGAGACCTGCCCCCAGCCGCC
CTACTTCCACACTTTCAGGACAAACGAGCAACCACTCAGGAAATAAACCAGATCCCCCACCTGT
GCTACGGGTTGATGACCGGCAGCGTCTGGCCAGAGAACGCCGTGAGGAACGAGAAAAACAGCTA
GCTGCACGAGAAACCGTCTGGCTAGAGAGAGAAGAGCGAGCCCGGCAGCACTATGAGAGGCACC
TGGAGGCACGGAAGAAGAAGCTGGAGGACCAGCGGCTGAAGGAGGAGCGGAGGAGAGCTGCGGT
GGAGGAGAAGCGGAGACAGAGGCTGGAGGAGGACAAGGAGCGCCATGAAGCTGTTGTTCGGCGG
ACGATGGAAAGGAGCCAGAAGCCGAAGCAGAAGTATAACCGGTGGTCGTGGGGAAGCCCTCTCC
ACGGGAGCTCTAGCATTCACAGTGGAGCATCTTGCAGCCCCATCACCACGCCCTTCAAAACTGC
ACACTCTAGAAACCCAGTGGATCGACCAAAACTCTTTATAACGCCGCCCGAGGGCTCTGCTCGG
AGGAGGACCATTCACGGGATATCGAGCTATAAAAGAGAACGAGAACACATTCCCTTCCACGTTT
CCCCTGGTGTCCGAAGGACTCTGTCTCCATCTAATCTCAAGGCGAGATCCCCAGCTCCAGCCCG
CCTTTGGCCCCCATCCAAGTCCATGCCTCATCTGCCCGGGACACCCCGACCGGCATCCTCCTTG
ACTCCTGGCCCCGTCAGAGCTGCTGCTTCTTCCTCGTCTCCTGGCAACATCCGCCCTGTCAAGA
GAGAAGTGAAAGTGGAGCCTGAGAAAAAAGACCCCGAGAAGAAAGTGACCAATGACCCCACAAT
AAAGGGCAGGGTGCCATTAGTGAAGGTGGAGGAGGGCACAGTTGAAGAGGGGACACCCGTGAAG
CCACCTGACCCTGCTGTTCCAGCCCCCACTCCAGCGACGGACCCAGCCCCAGCACCACCATCAC
CATCCTCTGTGAGTGTCGGTGTAATTCCTAAGACTTCTGCAGGCACCACTGACCCAGAAGAGGC
TACGAGGCTGCTGGCTGAGAAGAGGCGTCTAGCCAGAGAGCAAAGGGAGAAGGAAGAAAGGGAG
AGGAAGGAGAAGGAAGAGCTGGAGAGACAAAAGATAGAGGAATTGGCGCGAAGGGTGGCTGAAG
AGCGAAGTCGCAGGGAAGAGGAAGCGCGCAGGCTGGAAGCTGAGCAGGCGCGCAAGAGAGAGGA
GCTGGCGCTGCGTCTGGCTGAAGAGGAGCGGGAGCGGTGGGAGAGGGAGGAGGTGGAGCGCGCA
CAGAAGCAGAAAGAAGAAGAAGCCCGAGCCCGGGAGGAGGCAGAGAAGGCTCGGCAGGAACGAG
AGAAACATTTTCAGAAAGAAGAGCAGGAGCGCCTGGAGAGGAAGAAGCGACTTGAAGAGATCAT
GAGAAGAACCAGAAGGACAGAGACAGCGGATAAGAAAACCACTGGGCAAAGCAATGGCGACATG
GTCAAAGGAGTTCTCGCCGGAGAGACAGAGGTATCTGCCCTGCCAGGTGTGAACTCTCCAGGAC
ATGTCGAGTCTGCAGGCAGCACACATGGAGTGGCTTTGCAGCAATCAAAAGTGACCATAGAGAG
TTCTCCAGATTTGGAGAAGCAGCCAAATGAAAATGGAATGTCCACACAAAATGAAAATTTTGAA
GAAATTATAAACTTACCTGTTGGATCAAAAGCATCCAGATTAGACGTCTCCAATGAGAACCCAG
AAATTCCCTTGAAACCAATTTTGGCCTTTAATGATGAAGGGACACTTGGGCCCCTACCTCAGGT
GGATGGTGTGCAGACACAACAGACCACAGAAGTTATATGAGCGTTTCCTCTGAAGAACCAAAGC
AAACATTTTCTACGACGAATGGAATTTCAGGCTCCAAAGAGCCCCTCCCTCCAGTTTCCTAGAG
TTCTTGACCATCATTTTTAAAAGACGTATTAAAGTCAGCTCAAGACAACAGACTCAGTAGCTTT
TCTAACCATTTTCGCCAATAGGAAGAAATGCTCCTTAATGCTCCTTAATCTGATACCCTGAGGT
GGCATTTTCCAGAATGTCCCTCCTTAGTAAATAAATCAATATTTTTCTGAACTCTTTCAAAAAA
CAAAAAGAGCATTTCATTATAAAAAGAAACGGGCATGGTTATCACAGGGATCTTTTTTTTTTTT
TTTCACTTTTAAACTTCAATACATAAGATTGGCAAAAATAAAATACCTTTTACAACGTACTACT
TGACAATGGGTACCTCTTTGCCCTCCGGGTGGAGCGAGTGGAGGGTAGTCAAACAAACCTGTTT
GTTTAAATATTACTGCAAAGGCAGTTTGTAGAGGCAGAAGGTGGCCAGGTTACCTGGCCGTCAT
AAACACAGCTCGTAAACACGGGCATCCTGCAGACCCAGCTGCCACTGTCTTCCTGAGACTCCAT
TTACAGAACCACAATGACAACTCTGAAAATGTGAAGACATTTTTTTCAGAGCAAGAAAATAATT
CGCTGTCCTTTTTGTTTTTGTTTTTCCTACTTTTTTTGGAGAATGGGTTTCTCTGTGTAGCCCT
GGCTGTCCTAAAACTGGCTCTGGAGACCAGACTGACCTCGAACCCCACCTGCCTCTGCTTCCTG
GGTGCTGAGATCAGAGGCGCGCGACAGCCCCGCCTGGCTCAGCTGTCCTCCTAAGCGATGTATT
TATAAGAGCTTTTTTCCAGATAGATGAACTAGAACGGGACAGAGTGCAGACACGCTCCAGCAGA
TGCACTCCGCCTGCCGCCCTGGGAGCCTGGATGATGATGTGGGGCTCTCTGATGTCTGTATGCT
GCTGCCACCCCCAGGGATGGTGGGACTTCTCTCTCTTTGCCTTACGTGATTGCAGATGATGTGG
GGGAAATGTTTAATATTCCTTTAGATCAATGAATTTGGCTTCTGCTCGTTTCAGAGCAATGAGA
AAAAATGGTGTCGATGTCGGGGGACACGGACCGTCGCAAATGTCCTCAGTGTATAGCGACCCTC
CGCTTTTCCTGTGTCCTCCTTCTTCCCTCTTGCTGCTCAGCCCAGCTGTACAAACCTGCACTTT
GATTTGCTAATATAAATTCAGTTTTATTTTCCCACTTAAGAGACAACCAATGAGAAATGGAGAA
GGGAGTGCCGAGGCCATGGCGTCTCCCTCCCACTGTGATATATTGGTTTTATACAAAGAGCGAT
TGGTTAATCTACAAGATTTAATGTGGAACTATTCATCTATTGGGGTTCTTTTAAATCCAGGCAT
ACAATCTTTACCAACAGTTTGTAAAACATTGTTAAGACATCAATTTGTGGGGTCTCCCCATTTG
GTTGTCCATGTACATCTAGATATTGTATTAAAAAAAATCTGTTCAACAAATTTGTTCTATTTAT
TTAAATCTACCAAACATAAAATACAAATAAAATGTTTGACATAG

hide sequence

RefSeq Acc Id:

XM_039105391 ⟹ XP_038961319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,738,523 - 16,857,165 (+)	NCBI
mRatBN7.2	1	14,931,812 - 15,037,567 (+)	NCBI

RefSeq Acc Id:

XM_039105407 ⟹ XP_038961335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,808,185 - 16,857,165 (+)	NCBI
mRatBN7.2	1	14,988,584 - 15,037,567 (+)	NCBI

RefSeq Acc Id:

XM_039105408 ⟹ XP_038961336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,730,000 - 16,857,165 (+)	NCBI
mRatBN7.2	1	14,910,433 - 15,037,567 (+)	NCBI

RefSeq Acc Id:

XM_039105409 ⟹ XP_038961337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,730,002 - 16,857,165 (+)	NCBI
mRatBN7.2	1	14,910,434 - 15,037,567 (+)	NCBI

RefSeq Acc Id:

XM_039105431 ⟹ XP_038961359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,781,969 - 16,857,165 (+)	NCBI
mRatBN7.2	1	14,962,426 - 15,037,567 (+)	NCBI

RefSeq Acc Id:

XM_063284402 ⟹ XP_063140472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,808,185 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284408 ⟹ XP_063140478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,781,969 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284410 ⟹ XP_063140480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,808,185 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284414 ⟹ XP_063140484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,808,185 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284418 ⟹ XP_063140488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,730,001 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284422 ⟹ XP_063140492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,808,185 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284425 ⟹ XP_063140495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,730,401 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284427 ⟹ XP_063140497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,751,769 - 16,857,165 (+)	NCBI

RefSeq Acc Id:

XM_063284432 ⟹ XP_063140502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	16,753,982 - 16,857,165 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099740	(Get FASTA)	NCBI Sequence Viewer
	NP_001185567	(Get FASTA)	NCBI Sequence Viewer
	XP_038961319	(Get FASTA)	NCBI Sequence Viewer
	XP_038961335	(Get FASTA)	NCBI Sequence Viewer
	XP_038961336	(Get FASTA)	NCBI Sequence Viewer
	XP_038961337	(Get FASTA)	NCBI Sequence Viewer
	XP_038961359	(Get FASTA)	NCBI Sequence Viewer
	XP_063140472	(Get FASTA)	NCBI Sequence Viewer
	XP_063140478	(Get FASTA)	NCBI Sequence Viewer
	XP_063140480	(Get FASTA)	NCBI Sequence Viewer
	XP_063140484	(Get FASTA)	NCBI Sequence Viewer
	XP_063140488	(Get FASTA)	NCBI Sequence Viewer
	XP_063140492	(Get FASTA)	NCBI Sequence Viewer
	XP_063140495	(Get FASTA)	NCBI Sequence Viewer
	XP_063140497	(Get FASTA)	NCBI Sequence Viewer
	XP_063140502	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93793	(Get FASTA)	NCBI Sequence Viewer
	EDL93794	(Get FASTA)	NCBI Sequence Viewer
	EDL93795	(Get FASTA)	NCBI Sequence Viewer
	EDL93796	(Get FASTA)	NCBI Sequence Viewer
	EDL93797	(Get FASTA)	NCBI Sequence Viewer
	EDL93798	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017401
	ENSRNOP00000017401.6
	ENSRNOP00000075655
	ENSRNOP00000075655.3
	ENSRNOP00000079962
	ENSRNOP00000079962.2
	ENSRNOP00000080280.2
	ENSRNOP00000093069
	ENSRNOP00000093069.2
	ENSRNOP00000093262
	ENSRNOP00000093262.2
	ENSRNOP00000093910.1
	ENSRNOP00000098641
	ENSRNOP00000098641.1
	ENSRNOP00000099528
	ENSRNOP00000099528.1

RefSeq Acc Id:	NP_001099740 ⟸ NM_001106270
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6GKH8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGSATAIRQERLKTTHSRTIPLVLFTINEEDELQKNGNSRRPKASDGYKIQGKRPAPSRPTST LSGQTSNHSGNKPDPPPVLRVDDRQRLARERREEREKQLAARETVWLEREERARQHYERHLEAR KKKLEDQRLKEERRRAAVEEKRRQRLEEDKERHEAVVRRTMERSQKPKQKYNRWSWGSPLHGSS SIHSGDPDRRSVSTMNLSKHVDPVISKRLSSSSATLLNSPDRARRLQLSPWESSVVSRLLTPTH SFLARSKSTAALSGDTASCSPITTPFKTAHSRNPVDRPKLFITPPEGSARRRTIHGISSYKRER EHIPFHVSPGVRRTLSPSNLKARSPAPARLWPPSKSMPHLPGTPRPASSLTPGPVRAAASSSSP GNIRPVKREVKVEPEKKDPEKKVTNDPTIKGRVPLVKVEEGTVEEGTPVKPPDPGKNGPAAVPA PTPATDPAPAPPSPSSVSVGVIPKTSAGTTDPEEATRLLAEKRRLAREQREKEERERKEKEELE RQKIEELARRVAEERSRREEEARRLEAEQARKREELALRLAEEERERWEREEVERAQKQKEEEA RAREEAEKARQEREKHFQKEEQERLERKKRLEEIMRRTRRTETADKKTTGQSNGDMVKGVLAGE TEVSALPGVNSPGHVESAGSTHGVALQQSKVTIESSPDLEKQPNENGMSTQNENFEEIINLPVG SKASRLDVSNENPEIPLKPILAFNDEGTLGPLPQVDGVQTQQTTEVI hide sequence

RefSeq Acc Id:	NP_001185567 ⟸ NM_001198638
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEQGAGGDGHRGGDGATQSDPASDGYKIQGKRPAPSRPTSTLSGQTSNHSGNKPDPPPVLRVD DRQRLARERREEREKQLAARETVWLEREERARQHYERHLEARKKKLEDQRLKEERRRAAVEEKR RQRLEEDKERHEAVVRRTMERSQKPKQKYNRWSWGSPLHGSSSIHSGASCSPITTPFKTAHSRN PVDRPKLFITPPEGSARRRTIHGISSYKREREHIPFHVSPGVRRTLSPSNLKARSPAPARLWPP SKSMPHLPGTPRPASSLTPGPVRAAASSSSPGNIRPVKREVKVEPEKKDPEKKVTNDPTIKGRV PLVKVEEGTVEEGTPVKPPDPAVPAPTPATDPAPAPPSPSSVSVGVIPKTSAGTTDPEEATRLL AEKRRLAREQREKEERERKEKEELERQKIEELARRVAEERSRREEEARRLEAEQARKREELALR LAEEERERWEREEVERAQKQKEEEARAREEAEKARQEREKHFQKEEQERLERKKRLEEIMRRTR RTETADKKTTGQSNGDMVKGVLAGETEVSALPGVNSPGHVESAGSTHGVALQQSKVTIESSPDL EKQPNENGMSTQNENFEEIINLPVGSKASRLDVSNENPEIPLKPILAFNDEGTLGPLPQVDGVQ TQQTTEVI hide sequence

Ensembl Acc Id:

ENSRNOP00000075655 ⟸ ENSRNOT00000079845

Ensembl Acc Id:

ENSRNOP00000017401 ⟸ ENSRNOT00000017401

RefSeq Acc Id:	XP_038961336 ⟸ XM_039105408
- Peptide Label:	isoform X4
- UniProtKB:	F1MA82 (UniProtKB/TrEMBL), A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961337 ⟸ XM_039105409
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961319 ⟸ XM_039105391
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GKH8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961359 ⟸ XM_039105431
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961335 ⟸ XM_039105407
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082101 ⟸ ENSRNOT00000102172

Ensembl Acc Id:

ENSRNOP00000080477 ⟸ ENSRNOT00000095682

Ensembl Acc Id:

ENSRNOP00000093262 ⟸ ENSRNOT00000094977

Ensembl Acc Id:

ENSRNOP00000080280 ⟸ ENSRNOT00000099073

Ensembl Acc Id:

ENSRNOP00000093069 ⟸ ENSRNOT00000098943

Ensembl Acc Id:

ENSRNOP00000093910 ⟸ ENSRNOT00000093834

Ensembl Acc Id:

ENSRNOP00000079962 ⟸ ENSRNOT00000096725

RefSeq Acc Id:	XP_063140488 ⟸ XM_063284418
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140495 ⟸ XM_063284425
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063140497 ⟸ XM_063284427
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063140502 ⟸ XM_063284432
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063140478 ⟸ XM_063284408
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AJA9 (UniProtKB/TrEMBL), A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140472 ⟸ XM_063284402
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2KB52 (UniProtKB/TrEMBL), A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140480 ⟸ XM_063284410
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140484 ⟸ XM_063284414
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZPN4 (UniProtKB/TrEMBL), A0A8I6AJJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140492 ⟸ XM_063284422
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6AJJ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098641 ⟸ ENSRNOT00000139018

Ensembl Acc Id:

ENSRNOP00000099528 ⟸ ENSRNOT00000126107

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KB52-F1-model_v2	AlphaFold	A0A0G2KB52	1-751	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689515

Promoter ID:

EPDNEW_R39

Type:

multiple initiation site

Name:

Map7_1

Description:

microtubule-associated protein 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	15,620,655 - 15,620,715	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308866	AgrOrtholog
BioCyc Gene	G2FUF-62204	BioCyc
Ensembl Genes	ENSRNOG00000012701	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017401	ENTREZGENE
	ENSRNOT00000017401.7	UniProtKB/TrEMBL
	ENSRNOT00000079845	ENTREZGENE
	ENSRNOT00000079845.3	UniProtKB/TrEMBL
	ENSRNOT00000093834.2	UniProtKB/TrEMBL
	ENSRNOT00000094977	ENTREZGENE
	ENSRNOT00000094977.2	UniProtKB/TrEMBL
	ENSRNOT00000096725	ENTREZGENE
	ENSRNOT00000096725.2	UniProtKB/TrEMBL
	ENSRNOT00000098943	ENTREZGENE
	ENSRNOT00000098943.2	UniProtKB/TrEMBL
	ENSRNOT00000099073.2	UniProtKB/TrEMBL
	ENSRNOT00000126107	ENTREZGENE
	ENSRNOT00000126107.1	UniProtKB/TrEMBL
	ENSRNOT00000139018	ENTREZGENE
	ENSRNOT00000139018.1	UniProtKB/TrEMBL
InterPro	E-MAP-115	UniProtKB/TrEMBL
	MAP7_domain-containing	UniProtKB/TrEMBL
NCBI Gene	293016	ENTREZGENE
PANTHER	MICROTUBULE-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
	PTHR15073:SF4	UniProtKB/TrEMBL
Pfam	MAP7	UniProtKB/TrEMBL
PhenoGen	Map7	PhenoGen
RatGTEx	ENSRNOG00000012701	RatGTEx
UniProt	A0A0G2KB52	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPN4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPP9_RAT	UniProtKB/TrEMBL
	A0A8I6AJA9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJJ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GKH8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L7N8_RAT	UniProtKB/TrEMBL
	A0ABK0L9L9_RAT	UniProtKB/TrEMBL
	F1MA82	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-08-29	Map7	microtubule-associated protein 7	Mtap7	microtubule-associated protein 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mtap7	microtubule-associated protein 7	Mtap7_predicted	microtubule-associated protein 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mtap7_predicted	microtubule-associated protein 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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