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Gene: Rfx7 (regulatory factor X, 7) Rattus norvegicus

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Symbol:

Rfx7

Name:

regulatory factor X, 7

RGD ID:

1308795

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II core promoter sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 71 with behavioral abnormalities. Orthologous to human RFX7 (regulatory factor X7); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DNA-binding protein RFX7; LOC315804; regulatory factor X domain containing 2; regulatory factor X domain containing 2 homolog; regulatory factor X domain containing 2 homolog (human); Rfxdc2; RGD1308795; similar to hypothetical protein FLJ12994

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RFX7 (regulatory factor X7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Rfx7 (regulatory factor X, 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rfx7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RFX7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RFX7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rfx7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RFX7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RFX7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rfx7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rfx7 (regulatory factor X7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PACRG (parkin coregulated)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RFX7 (regulatory factor X7)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rfx7 (regulatory factor X, 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9727	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9727	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	rfx7a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rfx7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rfx7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	82,134,747 - 82,219,898 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	82,134,747 - 82,219,898 (+)	Ensembl				GRCr8
mRatBN7.2	8	73,254,051 - 73,339,209 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	73,254,051 - 73,339,209 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	78,778,776 - 78,864,739 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	77,051,402 - 77,137,359 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	74,888,803 - 74,974,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	79,159,297 - 79,279,962 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	79,159,370 - 79,279,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	73,807,892 - 73,928,042 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	77,120,962 - 77,207,169 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	68,410,734 - 68,500,408 (-)	NCBI		Celera
RGSC_v3.1	8	77,140,089 - 77,226,098 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 71 with behavioral abnormalities (ISO)

Familial Prostate Cancer (ISO)

genetic disease (ISO)

microcephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

butan-1-ol (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

FR900359 (ISO)

geldanamycin (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

theophylline (ISO)

thiabendazole (EXP)

thimerosal (ISO)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

triadimefon (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II core promoter sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Rfx7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	82,134,747 - 82,219,898 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	82,134,747 - 82,219,898 (+)	Ensembl				GRCr8
mRatBN7.2	8	73,254,051 - 73,339,209 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	73,254,051 - 73,339,209 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	78,778,776 - 78,864,739 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	77,051,402 - 77,137,359 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	74,888,803 - 74,974,766 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	79,159,297 - 79,279,962 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	79,159,370 - 79,279,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	73,807,892 - 73,928,042 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	77,120,962 - 77,207,169 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	68,410,734 - 68,500,408 (-)	NCBI		Celera
RGSC_v3.1	8	77,140,089 - 77,226,098 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

RFX7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	56,087,280 - 56,245,082 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	56,087,280 - 56,245,103 (-)	Ensembl			hg38	GRCh38
GRCh37	15	56,379,478 - 56,537,280 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	54,170,023 - 54,322,775 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	33,271,513 - 33,424,273 (-)	NCBI		Celera
Cytogenetic Map	15	q21.3	NCBI
HuRef	15	33,206,525 - 33,358,826 (-)	NCBI		HuRef
CHM1_1	15	56,501,038 - 56,653,705 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	53,890,709 - 54,047,935 (-)	NCBI		T2T-CHM13v2.0

Rfx7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	72,439,346 - 72,530,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	72,439,522 - 72,530,111 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	72,532,169 - 72,622,949 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	72,532,240 - 72,622,937 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	72,380,047 - 72,470,756 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	72,330,807 - 72,421,516 (+)	NCBI		MGSCv36	mm8
Celera	9	69,721,280 - 69,811,907 (+)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	40.08	NCBI

Rfx7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	59,536 - 118,315 (+)	Ensembl
ChiLan1.0	NW_004955409	59,535 - 121,157 (+)	NCBI	ChiLan1.0	ChiLan1.0

RFX7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	45,351,243 - 45,506,043 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	49,534,145 - 49,688,860 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	35,057,195 - 35,211,897 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	53,377,170 - 53,528,286 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	53,376,869 - 53,527,541 (-)	Ensembl			panPan2	panpan1.1

RFX7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	21,305,458 - 21,437,901 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	21,308,282 - 21,437,935 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	21,271,114 - 21,403,401 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	21,454,945 - 21,587,985 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	21,454,949 - 21,587,724 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	21,397,971 - 21,530,243 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	21,481,748 - 21,614,037 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	21,615,905 - 21,748,345 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rfx7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	99,617,863 - 99,740,775 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	17,465,925 - 17,588,844 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	17,465,926 - 17,588,838 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFX7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	115,734,347 - 115,871,084 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	115,732,167 - 115,871,951 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	128,199,569 - 128,288,521 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RFX7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	27,248,814 - 27,399,385 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	113,886,198 - 114,051,723 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rfx7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	5,702,975 - 5,785,730 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	5,701,042 - 5,787,302 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rfx7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	66,870,517 - 66,951,089 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rfx7
934 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	838
Count of miRNA genes:	327
Interacting mature miRNAs:	451
Transcripts:	ENSRNOT00000030629
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat

Markers in Region

AA851032

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,338,905 - 73,339,002 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,279,659 - 79,279,755	NCBI	Rnor6.0
Rnor_5.0	8	73,808,099 - 73,808,195	UniSTS	Rnor5.0
RGSC_v3.4	8	77,206,866 - 77,206,962	UniSTS	RGSC3.4
Celera	8	68,410,941 - 68,411,037	UniSTS
Cytogenetic Map	8	q24	UniSTS

fb10e01.x1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,322,429 - 73,322,582 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	110,790,675 - 110,790,836 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	115,745,958 - 115,746,118	NCBI	Rnor6.0
Rnor_6.0	8	79,263,183 - 79,263,335	NCBI	Rnor6.0
Rnor_5.0	8	73,824,519 - 73,824,671	UniSTS	Rnor5.0
Rnor_5.0	3	122,283,995 - 122,284,155	UniSTS	Rnor5.0
RGSC_v3.4	3	110,651,043 - 110,651,203	UniSTS	RGSC3.4
RGSC_v3.4	8	77,190,390 - 77,190,542	UniSTS	RGSC3.4
Celera	8	68,427,361 - 68,427,513	UniSTS
Celera	3	109,671,423 - 109,671,583	UniSTS
Cytogenetic Map	10	q12	UniSTS
Cytogenetic Map	8	q24	UniSTS

UniSTS:546976

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,335,900 - 73,336,906 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,276,654 - 79,277,659	NCBI	Rnor6.0
Rnor_5.0	8	73,810,195 - 73,811,200	UniSTS	Rnor5.0
Celera	8	68,413,037 - 68,414,042	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000086841 ⟹ ENSRNOP00000069427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	82,134,747 - 82,219,898 (+)	Ensembl
mRatBN7.2 Ensembl	8	73,254,051 - 73,339,209 (+)	Ensembl
Rnor_6.0 Ensembl	8	79,159,370 - 79,279,962 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141409 ⟹ ENSRNOP00000099171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	82,134,968 - 82,219,898 (+)	Ensembl

RefSeq Acc Id:

NM_001127490 ⟹ NP_001120962

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,134,747 - 82,219,898 (+)	NCBI
mRatBN7.2	8	73,254,051 - 73,339,209 (+)	NCBI
Rnor_6.0	8	79,159,370 - 79,279,962 (+)	NCBI
Rnor_5.0	8	73,807,892 - 73,928,042 (-)	NCBI
RGSC_v3.4	8	77,120,962 - 77,207,169 (+)	RGD
Celera	8	68,410,734 - 68,500,408 (-)	RGD

Sequence:

show sequence

GGGCTGCTCTGGGCTGGCAGGGCAGCAGCGGCCGCGGCGGCGGGGCCGGGAGCGAGCGAGGGAG
CGAGCGAGCGGCTCGGGGGAGTTCGGAGGCGCCAGGCCCCCGGGGGAGGGCGGCCGGGGAGGCA
GGCCCCCGAGAGACCTGTCGGGTTGGATTTTGGGGCCGAGGGGGCGCCTGACCACTGACCTCGT
TCTTCAGACGCCCCCCAGCCCCGGCCGCTGACGGGGGGCTGAGGGGCGCCGTCTTGCCTCTGCC
GCGGTGACGCGCGGGGCGGTAAGGAGAACCGGGAGAGGAACCGTGACGAGAACCGCAAGGAGAA
CCGGGAGAGGAACCGTGACGAGAGCCGCGAGGAGCCGCGCGGTCTCCCCGGGGATGTCCCTCAG
GCGGCCAGAGAAAGCGACTCACTCGAGCCCTGGGGTATAGGCCTAGCTTATCCAGCTTCCTTCC
TTCCTCCTCCTCCTCTTCCTCCCCTCCTCCTCCTCTTCCCCCCCTCCCCCTCCTCCTCCCCTCG
TCGTCCTCCCCTCCGCGTCTCTTCCCTCACCCTTCCCCGCGCCCCCATCTTCCCTCCCTCCCCT
CCAGCAGCGATGGCAGAGGAACAACAACAGCCGCCACCACAGCAGCTCGATGCCCATCAGCAGC
TTCCCCTCAGCGCCCCCAACCCCGGGGTGGCTCTGCCAGCCCTTGTGCCCGGGCTGCCAGGGAC
AGAGGCCAGCGCTCTGCAACACAAGATCAAGAACTCCATCTGCAAAACTGTACAATCTAAAGTG
GACTGCATTTTGCAAGAAGTTGAGAAGTTTACAGACCTAGAGAAACTCTACCTCTACCTTCAAC
TGCCTTCTGGTCTCAGCAGTGCAGAGAAAAGTGATCAGAATGCCATGTCATCTAGCCGGGCACA
GCAAATGCATGCCTTTTCCTGGATTCGAAATACCTTAGAGGAGCATCCTGAGACTTCACTCCCC
AAACAAGAAGTCTATGATGAATACAAGAGCTATTGTGACAATCTTGGCTACCATCCATTAAGTG
CTGCTGACTTTGGAAAAATCATGAAGAACGTCTTTCCAAACATGAAGGCACGCCGTTTGGGCAC
TAGAGGCAAATCTAAATATTGCTACAGTGGACTAAGGAAAAAAGCTTTTGTTCATATGCCAACA
CTGCCCAACCTTGACTTTCATAAAACTGGAGATGGGTTGGAAGGAGTTGAACCATCTGGGCAGC
TTCAAAATATTGATGAGGAAGTTATCTCTTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAA
AGTGTTAAGCCAGCCATTTGACACAGTCTTGGAATTAGCCCACTTCCTTGTAAAGAGTCATTAT
ATAGGCACCAAGTCAATGGCAGCTCTGACTGTGATGGCAGCAGCACCAGCAGGACTTAAAGGAA
TTTCCCAGCCTTCTGCTTTTATACCTACAGCTGAAAGTAATTCCTTTCAACCTCAAGTAAAGAC
TTTGTCATCTCCAATTGATGCTAAACAGCAGTTGCAACGGAAAATTCAAAAAAAGCAGCAAGAA
CAGAAACTACAGTCCCCATTACCAGGAGAATCCTCAGCAAAAAAAACAGAAGGCACTACAGCCA
ACGGAGTGGCTAATCTACCCAATGGGAACCCTGCGATCCTTTCTCCCCAGCCCATTGGGATTGT
GGTAGCAGCTGTCCCTAGTCCCATTCCGGTCCAGCGGACGAGGCAGTTAGTAACTTCACCCAGT
CCGATGAATTCTTCTGATGGCAAGGTTCTTCCCCTCAACGTGCAGGTAGTCACTCAGCACATGC
AGTCTGTGAAACAGACACCAAAGACTCCTCAGAACGTCCCAGCCAGTCCTGGTGGGGACCGTTC
TGCCAGGCACCGCTACCCTCAGATCTTACCCAAGCCAGCAAACACCAGTGCGCTCACCATCCGC
TCTCCTACGACTGTGCTGTTTACCAGCAGTCCCATCAAAACTGCTGTGGTACCTGCGTCACACA
TGAGTTCTCTAAATGTGGTGAAAATGACAACAATATCCCTCACACCCAGTAACAGTAATGCGCC
TCTTAAACATTCTGCCTCCGTCAGCAATGCTACTGGAACAACAGAGGACTCCAGGAGCATCCCT
CAGATCAAGAATGGTTCTGTTGTTTCTCTCCAGTCCCCTGGGTCCAGGGCCAGCAGCACTGGGG
GAACCTCTGCTGTGGAAGTCAAAATGGAACCAGAAGGTTCATCAGATGAGCATCCTCTGCAGTG
CCAAGAGAACGCTGAGGGGACTAAAGCTCCTCTGGCCACATCTAGTGCCCTTTGGGGACAGAAA
AGTAATACAGATGGAACAGTATCAAAACCTTCTAATGAAGGAGTCACAGAAGTGAAAACAACTA
AGGTCTGTGACCAGAGGGCCAAGTGTAAAAGTCGCTGTAATGAAACTCTGCCAGGCATCTCAGC
AGGCAATAATCAAAGCACTGTTACTCTCTCAGTTGCTACTCAGAACTTACCCTTCACCAGCACC
AGCTCACCATCTAATGGTGACTCAGTAAATAAAGACCCTAAATTATGCACTAAAAGTCCAAGAA
AACGACTGTCTGCTACACTGCAAGAGTCTCAGGTGCCTCCTGTAAAGAAACCAATTGTAGAACA
GCTTTCTGCAGTTACTACCGAAGGTCAGAAACCAGGCACTGTTAAAAAGGACCAAAAGGTTCCA
CATTCAGGGAAAACAGAAAGCTCAACAGCAGGTGCTCAGCCTCCTAACAAGGTGTCACTCAGTG
TCAGCTCACACATTGTAGAGGATCAGCCCTTGAACCCTACTCTTGTCGCCAGTGAATCAGCTCT
GGAGCAGCAGACAACGCCATCATCGTCTCCGGATGTAAAAGTAAAACTTGAAGGGAGTGTCTTT
CTTTTGGACCGTGAGTCAAACTCAGATGGCAGCTTTAATCGTAACGAATGGCAACAAGTTACTA
AGGATTCTGACTTCATATCTGCCAGCTGTGAGCAACAGCAAGACATTAGTGTGATGACAATTCC
TGAGCATCCTGACATCCATGATTTAGAGAAGTCTGTTTGGGAATTAGAAGGGATGCCACAGGAC
ACATACAGCCAGCAGCTCCATAGCCAGATACCAGAATCTTCTCTGAATGAAATACAAGCACAGT
CTTCAGATCAGTTACCGTTGCAGTCGGAACTGAAAGAGTTTGAGTCTTCTGTTTCCCAGACAAA
TGAAAGCTACTTTCCTTTTGATGATGAACTTACACAAGATAGCATTGTGGAAGAGCTGGTGCTT
ATGGAGCAGCAGATGTCAATGAATAACTCCCATTCTTATGGTAACTGCTTGGGAATGACCCTTC
AGAGTCAGTCAGTAACTCCAGGAGCTCCAATGTCATCTCATGGTTCCAGCTCTCACTTCTATCA
TCCAATCCATAGCAATGGCACTCCAATTCACACACCTACACCCACACCCACTCCTACACCAACT
CCGACCCCAACTCCAACCCCAACATCTGAAATGATTGCTGGGTCTCAGAGTCTGTCACGGGAGA
GCCCTTGTTCCAGGCTTGCCCAGACAACACCTGTGGATAGTGCTTTAGGAAGTAGCCGACACAC
ACCCATTGGTACTCCTCATTCTAATTGCAGCAGTAGCGTCCCTCCAAGCCCTGTTGAATGCAGG
AATCCATTTGCATTCACCCCAATAAGCTCCAGTATGGCATATCACGATGCCAGCATTGTCTCAA
GCAGTCCTGTAAAACCAATGCAAAGACCCATGGCCACTCACCCTGATAAAACCAAGCTTGAATG
GATGAATAATGGGTATGGTGGGGTTGGTAACTCATCAGTTTCTGGTCACGGCATTCTCCCAAGC
TATCAGGAACTAGTAGAAGATCGTTTCAGGAAACCTCATGCTTTTGCTGTGCCCGGACAGTCGT
ATCAGTCTCAGTCCAGACACCATGACACTCATTTTGGTCGTTTGACTCCCGTCTCTCCTGTGCA
GCATCAAGGTGCCACTGTAAACACCAACAAGCAAGAAGGGTTTGCAGTCCCCGCTCCTCTTGAT
AATAAAGGAACTAATTCATCTGCCAGCAGCAACTTCAGGTGCCGGAGTGTAAGCCCTGCTGTCC
ATCGCCAACGGAATCTTAGTGGAAGCACCCTCTATCCTGTGTCTAATATCCCACGGTCTAATGT
AACCCCCTTTGGAAGTCCAGTGACCCCAGAAGTTCATGTTTTCACAAATGTTCACACAGATGCA
TGTGCCAACAACATAGCTCAAAGAAGTCAGTCAGTTCCATTAACAGTCATGATGCAGACAGCCT
TCCCTAATGCTCTGCAGAAGCAAACAAACAGTAAAAAAATCACTAATGTTTTGTTGAGTAAACT
CGATTCTGACAATGATGATGCAGTGAGAGGTTTGGGAATGAACAACGTGCCCTCCAATTACACA
GCCCGGATGAATCTCACTCAGATTTTGGAAACTTCCCCTGTTTTTCCTAGTGCCAATTCACAAA
ATATGATCGATTCCAGCACTTCTGTTTATGAATTCCAAACACCATCTTACCTCACCAAAAGTAA
TAGCACCGATCAGATCAGTTTTTCTCCTGGAGATAATCAAGCACAATCTGAAATTGGAGAACAG
CAGTTAGATTTCAATAGCACTGTTAAAGACCTGTTGAGTGGAGACAACCTGCAAACCAGCCAGC
AGCTGGGAGGTCAGGTAGCATCTGATCTCACCAACACTGCATCTGATTTCCCTAGCGACATCAG
GTTGTCTTCTGACCTCTCAGGCAGCATCAATGATTTGAACACCTTAGACCCAAATCTACTGTTT
GATCCAGGTCGTCAGCAGGGACAGGATGATGAAGCCACACTGGAAGAATTAAAGAATGACCCAC
TGTTTCAACAGATTTGCAGTGAGTCAATGAACTCTATGACTTCATCAGGTTTTGAATGGATAGA
AAGCAAGGACCATCCTACTGTTGAAATGTTGGGATGAATTGTGTTTTATATAATATGTAGCACA
CTGTATCTAAAGACATATGTATTGTATTTGTCTTAATGGAAGTGCCTCCCGCAGCAGAAACACT
ATTAATTGTAACATTTTAAAGGCGTTTGCTGCAGAAGTGGTTTCTTCAGTAGGAAATGGTTAGA
CTTGCCTCAGTGCTGGACACGTTTCTGAAGACAGTAGGCTGTAGAGCAAGTATTAGGTTTTAAA
TTTTATAATGTTTCCCATTTAATCACATTTGCTAGTAAAGAATCCAGCTTTTTACGAGAGCAGT
CTGGGTCTTTTATTTTGTATAAGTTCATTTTAACTCATCAGTTGATCTACACAGAAATTAAAAG
ACCATCCATTTTTAGTTGTAGGCTGTTTTGTTGTTGGCATTATCTTTTAGGTATAAAATCATAG
CTAAGGTAAACTGTAGGCAAGAGAGTCTTCCTTAAAACAGGGATAATATTCAGGTTATTATAGA
TATTTAAGCTTGAAACATAAAGCTACTGTAGGATGAGAAATCTCTGTAGGACTTTCTGGGGCTT
CGGTACCATTTACTCCCACAATGAAGGGCTTATGTAGGGGAAAATAACGGAAAACAAACTTAAT
TTAAGGAAAGTAAAAGCTGCACTAAAATGTTTAAGAGGAAAACCAGTAGCCATTTATTTGTGAC
ATTGCATTAGTCCAGTTTTAGAAGGTGGCTTTTAAAATGGAGCTCTCAAGCTCATGCACTCTGC
CTCTCCCTCTCTCCCCCTCACCCTACTTTCCCCCTTTCCCTCCCTCCTATCTTCCCTCTTCCTC
TCTTCTTCCCTCCCCTACACACACACAACATTAAGATTTAATAGAAGAAATACAAGCATGTTAG
AAAATTGTCTCATGTTTTATTATTTGCTTGCTGAGATTGGAGTGTTAGAAGGAAAATAGAGGAC
TTTTTTTTTTTTTAGTGTCTTCACCACAGCTCCATGTACATACTGAAATTCTACTGAAGAATTA
ATTATTTTTAATGCTTTTCACCATGGTATCCTTTAGTAATCAGCTTTCCTCCTCCTCAGTTTGC
TGACTAACTCTTTGCTTCTCTGAACGTAGTAATACAGTTTTATCATGAATCAAAACACCAAGCA
TGAAAGAGATAACATTAAAAGCCCAGCAAAAAAGCATTTCTTCCCCTGAGGTCTGACACCTCGG
ATCTTCATATCTGATAAACCAAGAGGATGTGATAGTACTTGAAGAGAGGAGCATTCATTACGTG
CTTCACTTATTTATTCTGATGGACACAGTTGCAGACGAAGCAGAGCACTCAGGATTTGTTTTAA
AGTGTTTCTCTGTGGCTCCCATTTTGTTTTATGAATAGTATTTATGAATTTCATGTTAACACAA
AACTAGTAGGCAGCTCCATTTAAGTGAGTTTTAAGATAATTTTCAGAGATATTAAAGTTAACCC
TAAGTTCTTAAAAGATAACATGAGAACATTCACTATACTCTCCTGACTAGCCAAGCTTTTCTTT
TACCTTAATTCAAAAATAAATCAGAAGACGACAAACTGAATATTTAACAAATAGGATAGAAGGG
TTAATTTAATAAGGGTCCGTTGTTGAGCAGATTTGAAAGTAGGGTATTAACATATTCTAATAAA
TCAATGGTGCTAGAGTTGGCTCAGAGGTTTATCTAAGGATATGTCCTAGTTACTGGCATATGTG
TGTGTTTGCTGTTAATTTGATTTAATGATTTGTTAGATTTTTTCTTGATACTAGTTATTTCTTC
ACTGTACATTGAGATACAGCACTACTGCACACCAAAGTATGTAATACCCAAAGGAGACTGTGTG
ATTTCTTGTAACAAATGATGGGAGTCTTTCTCAGTGAGATACTCTGAAGAGGAGACTCTGAGGC
CATTCTAATCCCTTGTTTACACTGTTAGCTTCCTACTAATATAAAAATAATGGAAATCTTTTTT
TGATAAAAAAAAAAAAAGTATAGAGACTGGAGGATTTTTACCCCTCGCCCCCTGTACAGTATTG
CAGCAAACTCTTTAAATTTGGCTGAATTCGTCCAGCAAACTTTTTGGGGTTCATATTATTGCAC
TAAATTTGTTGAACCTGTGGTAGGCACATCTCTTAGGATAAATGCAACCAGTACAGTCCACAGA
TTAAAATTTTTAAATGTGTTTCATTATGAAAAGACAAAATATCATCAAAGTGACAGATGAAATT
GTCTTATGTAGCAATGTGCACTGATCTCAATGAGATATTTCTATTTCTTATTCTCTTACACGAG
AATATTACAGCAGGAAGAATTAAGTTTAGTTTGCTTCACCATGTTAATACATGATCACAAGATG
TGCATGAGTGTTCTTGACTTATCTTGTACAGTACTAGGTAATCCTGTAACCACTTTTTTTCCCC
TCTTGGCTGTATTGAAACTGGCTCTGTGTTAACCAGGTGAGCATAGTTATTCACAGGTTATTTT
GCTTCTTTTAATGTTTACTAATTCTGCTTAGTTGTTAACTATGTTCTTTTCTTGGGATTTTTTT
CATTGTTTTGACGTTTAAAACATTTTGCATACTGTTTTATCATGATAAGACTTCATGAAGTAAA
TAATTTTGCATATAATTGCAATAAGCACTGACTTTTGAACTGAGAAAGAAGGAGCGTGTTTTGT
GCAGTGCATCTGAGGTTCAGATAACAGTCTTGTACTACAGCGTGCTTACTACACCAGAGGTGAC
AAAAGCAAGCCCTGTCGTGTGTTTCCTTTAGTGCAGAGTCAGACCCTGGTGCTTTGTTGTCTGT
TGTACCTGCTGAGATTACAGTAGTTGAGCATCGCACAGTAGCATTTCAGTTCTCTTTTTTTATT
AAAAGTGCTCAAATTGTTTTTTAAATGTTTTCAAGAACAATTAAAAACATTTTATATTATACTG
ACTGGATGTTAAGATGATTTATTGGATGTATTTTTATAGACAATTTGCCATTTTATAAATATGT
ACATGATGCTGTATTTTCCTTGAACTGGTGAAATGGGGGAGGACATAAAAATGATGCAAGGC

hide sequence

RefSeq Acc Id:

XM_006243326 ⟹ XP_006243388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,134,759 - 82,219,769 (+)	NCBI
mRatBN7.2	8	73,254,333 - 73,339,084 (+)	NCBI
Rnor_6.0	8	79,159,297 - 79,279,837 (+)	NCBI
Rnor_5.0	8	73,807,892 - 73,928,042 (-)	NCBI

Sequence:

show sequence

CGCGTCCACGCCCCCCGGCCGCGCGGTAGGTGTTGTGCCGTCTGCGCTGGGCCGCAGTGCGGCT
GCGCGCGCTGGGCTGCTCTGGGCTGGCAGGGCAGCAGCGGCCGCGGCGGCGGGGCCGGGAGCGA
GCGAGGGAGCGAGCGAGCGGCTCGGGGGAGTTCGGAGGCGCCAGGCCCCCGGGGGAGGGCGGCC
GGGGAGGCAGGCCCCCGAGAGACCTGTCGGGTTGGATTTTGGGGCCGAGGGGGCGCCTGACCAC
TGACCTCGTTCTTCAGACGCCCCCCAGCCCCGGCCGCTGACGGGGGGCTGAGGGGCGCCGTCTT
GCCTCTGCCGCGGTGACGCGCGGGGCGGTAAGGAGAACCGGGAGAGGAACCGTGACGAGAACCG
CAAGGAGAACCGGGAGAGGAACCGTGACGAGAGCCGCGAGGAGCCGCGCGGTCTCCCCGGGGAT
GTCCCTCAGGCGGCCAGAGAAAGCGACTCACTCGAGCCCTGGGCGATGGCAGAGGAACAACAAC
AGCCGCCACCACAGCAGCTCGATGCCCATCAGCAGCTTCCCCTCAGCGCCCCCAACCCCGGGGT
GGCTCTGCCAGCCCTTGTGCCCGGGCTGCCAGGGACAGAGGCCAGCGCTCTGCAACACAAGATC
AAGAACTCCATCTGCAAAACTGTACAATCTAAAGTGGACTGCATTTTGCAAGAAGTTGAGAAGT
TTACAGACCTAGAGAAACTCTACCTCTACCTTCAACTGCCTTCTGGTCTCAGCAGTGCAGAGAA
AAGTGATCAGAATGCCATGTCATCTAGCCGGGCACAGCAAATGCATGCCTTTTCCTGGATTCGA
AATACCTTAGAGGAGCATCCTGAGACTTCACTCCCCAAACAAGAAGTCTATGATGAATACAAGA
GCTATTGTGACAATCTTGGCTACCATCCATTAAGTGCTGCTGACTTTGGAAAAATCATGAAGAA
CGTCTTTCCAAACATGAAGGCACGCCGTTTGGGCACTAGAGGCAAATCTAAATATTGCTACAGT
GGACTAAGGAAAAAAGCTTTTGTTCATATGCCAACACTGCCCAACCTTGACTTTCATAAAACTG
GAGATGGGTTGGAAGGAGTTGAACCATCTGGGCAGCTTCAAAATATTGATGAGGAAGTTATCTC
TTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAAAGTGTTAAGCCAGCCATTTGACACAGTC
TTGGAATTAGCCCACTTCCTTGTAAAGAGTCATTATATAGGCACCAAGTCAATGGCAGCTCTGA
CTGTGATGGCAGCAGCACCAGCAGGACTTAAAGGAATTTCCCAGCCTTCTGCTTTTATACCTAC
AGCTGAAAGTAATTCCTTTCAACCTCAAGTAAAGACTTTGTCATCTCCAATTGATGCTAAACAG
CAGTTGCAACGGAAAATTCAAAAAAAGCAGCAAGAACAGAAACTACAGTCCCCATTACCAGGAG
AATCCTCAGCAAAAAAAACAGAAGGCACTACAGCCAACGGAGTGGCTAATCTACCCAATGGGAA
CCCTGCGATCCTTTCTCCCCAGCCCATTGGGATTGTGGTAGCAGCTGTCCCTAGTCCCATTCCG
GTCCAGCGGACGAGGCAGTTAGTAACTTCACCCAGTCCGATGAATTCTTCTGATGGCAAGGTTC
TTCCCCTCAACGTGCAGGTAGTCACTCAGCACATGCAGTCTGTGAAACAGACACCAAAGACTCC
TCAGAACGTCCCAGCCAGTCCTGGTGGGGACCGTTCTGCCAGGCACCGCTACCCTCAGATCTTA
CCCAAGCCAGCAAACACCAGTGCGCTCACCATCCGCTCTCCTACGACTGTGCTGTTTACCAGCA
GTCCCATCAAAACTGCTGTGGTACCTGCGTCACACATGAGTTCTCTAAATGTGGTGAAAATGAC
AACAATATCCCTCACACCCAGTAACAGTAATGCGCCTCTTAAACATTCTGCCTCCGTCAGCAAT
GCTACTGGAACAACAGAGGACTCCAGGAGCATCCCTCAGATCAAGAATGGTTCTGTTGTTTCTC
TCCAGTCCCCTGGGTCCAGGGCCAGCAGCACTGGGGGAACCTCTGCTGTGGAAGTCAAAATGGA
ACCAGAAGGTTCATCAGATGAGCATCCTCTGCAGTGCCAAGAGAACGCTGAGGGGACTAAAGCT
CCTCTGGCCACATCTAGTGCCCTTTGGGGACAGAAAAGTAATACAGATGGAACAGTATCAAAAC
CTTCTAATGAAGGAGTCACAGAAGTGAAAACAACTAAGGTCTGTGACCAGAGGGCCAAGTGTAA
AAGTCGCTGTAATGAAACTCTGCCAGGCATCTCAGCAGGCAATAATCAAAGCACTGTTACTCTC
TCAGTTGCTACTCAGAACTTACCCTTCACCAGCACCAGCTCACCATCTAATGGTGACTCAGTAA
ATAAAGACCCTAAATTATGCACTAAAAGTCCAAGAAAACGACTGTCTGCTACACTGCAAGAGTC
TCAGGTGCCTCCTGTAAAGAAACCAATTGTAGAACAGCTTTCTGCAGTTACTACCGAAGGTCAG
AAACCAGGCACTGTTAAAAAGGACCAAAAGGTTCCACATTCAGGGAAAACAGAAAGCTCAACAG
CAGGTGCTCAGCCTCCTAACAAGGTGTCACTCAGTGTCAGCTCACACATTGTAGAGGATCAGCC
CTTGAACCCTACTCTTGTCGCCAGTGAATCAGCTCTGGAGCAGCAGACAACGCCATCATCGTCT
CCGGATGTAAAAGTAAAACTTGAAGGGAGTGTCTTTCTTTTGGACCGTGAGTCAAACTCAGATG
GCAGCTTTAATCGTAACGAATGGCAACAAGTTACTAAGGATTCTGACTTCATATCTGCCAGCTG
TGAGCAACAGCAAGACATTAGTGTGATGACAATTCCTGAGCATCCTGACATCCATGATTTAGAG
AAGTCTGTTTGGGAATTAGAAGGGATGCCACAGGACACATACAGCCAGCAGCTCCATAGCCAGA
TACCAGAATCTTCTCTGAATGAAATACAAGCACAGTCTTCAGATCAGTTACCGTTGCAGTCGGA
ACTGAAAGAGTTTGAGTCTTCTGTTTCCCAGACAAATGAAAGCTACTTTCCTTTTGATGATGAA
CTTACACAAGATAGCATTGTGGAAGAGCTGGTGCTTATGGAGCAGCAGATGTCAATGAATAACT
CCCATTCTTATGGTAACTGCTTGGGAATGACCCTTCAGAGTCAGTCAGTAACTCCAGGAGCTCC
AATGTCATCTCATGGTTCCAGCTCTCACTTCTATCATCCAATCCATAGCAATGGCACTCCAATT
CACACACCTACACCCACACCCACTCCTACACCAACTCCGACCCCAACTCCAACCCCAACATCTG
AAATGATTGCTGGGTCTCAGAGTCTGTCACGGGAGAGCCCTTGTTCCAGGCTTGCCCAGACAAC
ACCTGTGGATAGTGCTTTAGGAAGTAGCCGACACACACCCATTGGTACTCCTCATTCTAATTGC
AGCAGTAGCGTCCCTCCAAGCCCTGTTGAATGCAGGAATCCATTTGCATTCACCCCAATAAGCT
CCAGTATGGCATATCACGATGCCAGCATTGTCTCAAGCAGTCCTGTAAAACCAATGCAAAGACC
CATGGCCACTCACCCTGATAAAACCAAGCTTGAATGGATGAATAATGGGTATGGTGGGGTTGGT
AACTCATCAGTTTCTGGTCACGGCATTCTCCCAAGCTATCAGGAACTAGTAGAAGATCGTTTCA
GGAAACCTCATGCTTTTGCTGTGCCCGGACAGTCGTATCAGTCTCAGTCCAGACACCATGACAC
TCATTTTGGTCGTTTGACTCCCGTCTCTCCTGTGCAGCATCAAGGTGCCACTGTAAACACCAAC
AAGCAAGAAGGGTTTGCAGTCCCCGCTCCTCTTGATAATAAAGGAACTAATTCATCTGCCAGCA
GCAACTTCAGGTGCCGGAGTGTAAGCCCTGCTGTCCATCGCCAACGGAATCTTAGTGGAAGCAC
CCTCTATCCTGTGTCTAATATCCCACGGTCTAATGTAACCCCCTTTGGAAGTCCAGTGACCCCA
GAAGTTCATGTTTTCACAAATGTTCACACAGATGCATGTGCCAACAACATAGCTCAAAGAAGTC
AGTCAGTTCCATTAACAGTCATGATGCAGACAGCCTTCCCTAATGCTCTGCAGAAGCAAACAAA
CAGTAAAAAAATCACTAATGTTTTGTTGAGTAAACTCGATTCTGACAATGATGATGCAGTGAGA
GGTTTGGGAATGAACAACGTGCCCTCCAATTACACAGCCCGGATGAATCTCACTCAGATTTTGG
AAACTTCCCCTGTTTTTCCTAGTGCCAATTCACAAAATATGATCGATTCCAGCACTTCTGTTTA
TGAATTCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCGATCAGATCAGTTTTTCTCCT
GGAGATAATCAAGCACAATCTGAAATTGGAGAACAGCAGTTAGATTTCAATAGCACTGTTAAAG
ACCTGTTGAGTGGAGACAACCTGCAAACCAGCCAGCAGCTGGGAGGTCAGGTAGCATCTGATCT
CACCAACACTGCATCTGATTTCCCTAGCGACATCAGGTTGTCTTCTGACCTCTCAGGCAGCATC
AATGATTTGAACACCTTAGACCCAAATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAGGATG
ATGAAGCCACACTGGAAGAATTAAAGAATGACCCACTGTTTCAACAGATTTGCAGTGAGTCAAT
GAACTCTATGACTTCATCAGGTTTTGAATGGATAGAAAGCAAGGACCATCCTACTGTTGAAATG
TTGGGATGAATTGTGTTTTATATAATATGTAGCACACTGTATCTAAAGACATATGTATTGTATT
TGTCTTAATGGAAGTGCCTCCCGCAGCAGAAACACTATTAATTGTAACATTTTAAAGGCGTTTG
CTGCAGAAGTGGTTTCTTCAGTAGGAAATGGTTAGACTTGCCTCAGTGCTGGACACGTTTCTGA
AGACAGTAGGCTGTAGAGCAAGTATTAGGTTTTAAATTTTATAATGTTTCCCATTTAATCACAT
TTGCTAGTAAAGAATCCAGCTTTTTACGAGAGCAGTCTGGGTCTTTTATTTTGTATAAGTTCAT
TTTAACTCATCAGTTGATCTACACAGAAATTAAAAGACCATCCATTTTTAGTTGTAGGCTGTTT
TGTTGTTGGCATTATCTTTTAGGTATAAAATCATAGCTAAGGTAAACTGTAGGCAAGAGAGTCT
TCCTTAAAACAGGGATAATATTCAGGTTATTATAGATATTTAAGCTTGAAACATAAAGCTACTG
TAGGATGAGAAATCTCTGTAGGACTTTCTGGGGCTTCGGTACCATTTACTCCCACAATGAAGGG
CTTATGTAGGGGAAAATAACGGAAAACAAACTTAATTTAAGGAAAGTAAAAGCTGCACTAAAAT
GTTTAAGAGGAAAACCAGTAGCCATTTATTTGTGACATTGCATTAGTCCAGTTTTAGAAGGTGG
CTTTTAAAATGGAGCTCTCAAGCTCATGCACTCTGCCTCTCCCTCTCTCCCCCTCACCCTACTT
TCCCCCTTTCCCTCCCTCCTATCTTCCCTCTTCCTCTCTTCTTCCCTCCCCTACACACACACAA
CATTAAGATTTAATAGAAGAAATACAAGCATGTTAGAAAATTGTCTCATGTTTTATTATTTGCT
TGCTGAGATTGGAGTGTTAGAAGGAAAATAGAGGACTTTTTTTTTTTTTAGTGTCTTCACCACA
GCTCCATGTACATACTGAAATTCTACTGAAGAATTAATTATTTTTAATGCTTTTCACCATGGTA
TCCTTTAGTAATCAGCTTTCCTCCTCCTCAGTTTGCTGACTAACTCTTTGCTTCTCTGAACGTA
GTAATACAGTTTTATCATGAATCAAAACACCAAGCATGAAAGAGATAACATTAAAAGCCCAGCA
AAAAAGCATTTCTTCCCCTGAGGTCTGACACCTCGGATCTTCATATCTGATAAACCAAGAGGAT
GTGATAGTACTTGAAGAGAGGAGCATTCATTACGTGCTTCACTTATTTATTCTGATGGACACAG
TTGCAGACGAAGCAGAGCACTCAGGATTTGTTTTAAAGTGTTTCTCTGTGGCTCCCATTTTGTT
TTATGAATAGTATTTATGAATTTCATGTTAACACAAAACTAGTAGGCAGCTCCATTTAAGTGAG
TTTTAAGATAATTTTCAGAGATATTAAAGTTAACCCTAAGTTCTTAAAAGATAACATGAGAACA
TTCACTATACTCTCCTGACTAGCCAAGCTTTTCTTTTACCTTAATTCAAAAATAAATCAGAAGA
CGACAAACTGAATATTTAACAAATAGGATAGAAGGGTTAATTTAATAAGGGTCCGTTGTTGAGC
AGATTTGAAAGTAGGGTATTAACATATTCTAATAAATCAATGGTGCTAGAGTTGGCTCAGAGGT
TTATCTAAGGATATGTCCTAGTTACTGGCATATGTGTGTGTTTGCTGTTAATTTGATTTAATGA
TTTGTTAGATTTTTTCTTGATACTAGTTATTTCTTCACTGTACATTGAGATACAGCACTACTGC
ACACCAAAGTATGTAATACCCAAAGGAGACTGTGTGATTTCTTGTAACAAATGATGGGAGTCTT
TCTCAGTGAGATACTCTGAAGAGGAGACTCTGAGGCCATTCTAATCCCTTGTTTACACTGTTAG
CTTCCTACTAATATAAAAATAATGGAAATCTTTTTTTGATAAAAAAAAAAAAAGTATAGAGACT
GGAGGATTTTTACCCCTCGCCCCCTGTACAGTATTGCAGCAAACTCTTTAAATTTGGCTGAATT
CGTCCAGCAAACTTTTTGGGGTTCATATTATTGCACTAAATTTGTTGAACCTGTGGTAGGCACA
TCTCTTAGGATAAATGCAACCAGTACAGTCCACAGATTAAAATTTTTAAATGTGTTTCATTATG
AAAAGACAAAATATCATCAAAGTGACAGATGAAATTGTCTTATGTAGCAATGTGCACTGATCTC
AATGAGATATTTCTATTTCTTATTCTCTTACACGAGAATATTACAGCAGGAAGAATTAAGTTTA
GTTTGCTTCACCATGTTAATACATGATCACAAGATGTGCATGAGTGTTCTTGACTTATCTTGTA
CAGTACTAGGTAATCCTGTAACCACTTTTTTTCCCCTCTTGGCTGTATTGAAACTGGCTCTGTG
TTAACCAGGTGAGCATAGTTATTCACAGGTTATTTTGCTTCTTTTAATGTTTACTAATTCTGCT
TAGTTGTTAACTATGTTCTTTTCTTGGGATTTTTTTCATTGTTTTGACGTTTAAAACATTTTGC
ATACTGTTTTATCATGATAAGACTTCATGAAGTAAATAATTTTGCATATAATTGCAATAAGCAC
TGACTTTTGAACTGAGAAAGAAGGAGCGTGTTTTGTGCAGTGCATCTGAGGTTCAGATAACAGT
CTTGTACTACAGCGTGCTTACTACACCAGAGGTGACAAAAGCAAGCCCTGTCGTGTGTTTCCTT
TAGTGCAGAGTCAGACCCTGGTGCTTTGTTGTCTGTTGTACCTGCTGAGATTACAGTAGTTGAG
CATCGCACAGTAGCATTTCAGTTCTCTTTTTTTATTAAAAGTGCTCAAATTGTTTTTTAAATGT
TTTCAAGAACAATTAAAAACATTTTATATTATACTGA

hide sequence

RefSeq Acc Id:

XM_017595669 ⟹ XP_017451158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,134,758 - 82,219,769 (+)	NCBI
mRatBN7.2	8	73,254,334 - 73,339,084 (+)	NCBI
Rnor_6.0	8	79,159,297 - 79,279,837 (+)	NCBI

Sequence:

show sequence

CGCGTCCACGCCCCCCGGCCGCGCGGTAGGTGTTGTGCCGTCTGCGCTGGGCCGCAGTGCGGCT
GCGCGCGCTGGGCTGCTCTGGGCTGGCAGGGCAGCAGCGGCCGCGGCGGCGGGGCCGGGAGCGA
GCGAGGGAGCGAGCGAGCGGCTCGGGGGAGTTCGGAGGCGCCAGGCCCCCGGGGGAGGGCGGCC
GGGGAGGCAGGCCCCCGAGAGACCTGTCGGGTTGGATTTTGGGGCCGAGGGGGCGCCTGACCAC
TGACCTCGTTCTTCAGACGCCCCCCAGCCCCGGCCGCTGACGGGGGGCTGAGGGGCGCCGTCTT
GCCTCTGCCGCGGTGACGCGCGGGGCGGTAAGGAGAACCGGGAGAGGAACCGTGACGAGAACCG
CAAGGAGAACCGGGAGAGGAACCGTGACGAGAGCCGCGAGGAGCCGCGCGGTCTCCCCGGGGAT
GTCCCTCAGGCGGCCAGAGAAAGCGACTCACTCGAGCCCTGGGCAGCGATGGCAGAGGAACAAC
AACAGCCGCCACCACAGCAGCTCGATGCCCATCAGCAGCTTCCCCTCAGCGCCCCCAACCCCGG
GGTGGCTCTGCCAGCCCTTGTGCCCGGGCTGCCAGGGACAGAGGCCAGCGCTCTGCAACACAAG
ATCAAGAACTCCATCTGCAAAACTGTACAATCTAAAGTGGACTGCATTTTGCAAGAAGTTGAGA
AGTTTACAGACCTAGAGAAACTCTACCTCTACCTTCAACTGCCTTCTGGTCTCAGCAGTGCAGA
GAAAAGTGATCAGAATGCCATGTCATCTAGCCGGGCACAGCAAATGCATGCCTTTTCCTGGATT
CGAAATACCTTAGAGGAGCATCCTGAGACTTCACTCCCCAAACAAGAAGTCTATGATGAATACA
AGAGCTATTGTGACAATCTTGGCTACCATCCATTAAGTGCTGCTGACTTTGGAAAAATCATGAA
GAACGTCTTTCCAAACATGAAGGCACGCCGTTTGGGCACTAGAGGCAAATCTAAATATTGCTAC
AGTGGACTAAGGAAAAAAGCTTTTGTTCATATGCCAACACTGCCCAACCTTGACTTTCATAAAA
CTGGAGATGGGTTGGAAGGAGTTGAACCATCTGGGCAGCTTCAAAATATTGATGAGGAAGTTAT
CTCTTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAAAGTGTTAAGCCAGCCATTTGACACA
GTCTTGGAATTAGCCCACTTCCTTGTAAAGAGTCATTATATAGGCACCAAGTCAATGGCAGCTC
TGACTGTGATGGCAGCAGCACCAGCAGGACTTAAAGGAATTTCCCAGCCTTCTGCTTTTATACC
TACAGCTGAAAGTAATTCCTTTCAACCTCAAGTAAAGACTTTGTCATCTCCAATTGATGCTAAA
CAGCAGTTGCAACGGAAAATTCAAAAAAAGCAGCAAGAACAGAAACTACAGTCCCCATTACCAG
GAGAATCCTCAGCAAAAAAAACAGAAGGCACTACAGCCAACGGAGTGGCTAATCTACCCAATGG
GAACCCTGCGATCCTTTCTCCCCAGCCCATTGGGATTGTGGTAGCAGCTGTCCCTAGTCCCATT
CCGGTCCAGCGGACGAGGCAGTTAGTAACTTCACCCAGTCCGATGAATTCTTCTGATGGCAAGG
TTCTTCCCCTCAACGTGCAGGTAGTCACTCAGCACATGCAGTCTGTGAAACAGACACCAAAGAC
TCCTCAGAACGTCCCAGCCAGTCCTGGTGGGGACCGTTCTGCCAGGCACCGCTACCCTCAGATC
TTACCCAAGCCAGCAAACACCAGTGCGCTCACCATCCGCTCTCCTACGACTGTGCTGTTTACCA
GCAGTCCCATCAAAACTGCTGTGGTACCTGCGTCACACATGAGTTCTCTAAATGTGGTGAAAAT
GACAACAATATCCCTCACACCCAGTAACAGTAATGCGCCTCTTAAACATTCTGCCTCCGTCAGC
AATGCTACTGGAACAACAGAGGACTCCAGGAGCATCCCTCAGATCAAGAATGGTTCTGTTGTTT
CTCTCCAGTCCCCTGGGTCCAGGGCCAGCAGCACTGGGGGAACCTCTGCTGTGGAAGTCAAAAT
GGAACCAGAAGGTTCATCAGATGAGCATCCTCTGCAGTGCCAAGAGAACGCTGAGGGGACTAAA
GCTCCTCTGGCCACATCTAGTGCCCTTTGGGGACAGAAAAGTAATACAGATGGAACAGTATCAA
AACCTTCTAATGAAGGAGTCACAGAAGTGAAAACAACTAAGGTCTGTGACCAGAGGGCCAAGTG
TAAAAGTCGCTGTAATGAAACTCTGCCAGGCATCTCAGCAGGCAATAATCAAAGCACTGTTACT
CTCTCAGTTGCTACTCAGAACTTACCCTTCACCAGCACCAGCTCACCATCTAATGGTGACTCAG
TAAATAAAGACCCTAAATTATGCACTAAAAGTCCAAGAAAACGACTGTCTGCTACACTGCAAGA
GTCTCAGGTGCCTCCTGTAAAGAAACCAATTGTAGAACAGCTTTCTGCAGTTACTACCGAAGGT
CAGAAACCAGGCACTGTTAAAAAGGACCAAAAGGTTCCACATTCAGGGAAAACAGAAAGCTCAA
CAGCAGGTGCTCAGCCTCCTAACAAGGTGTCACTCAGTGTCAGCTCACACATTGTAGAGGATCA
GCCCTTGAACCCTACTCTTGTCGCCAGTGAATCAGCTCTGGAGCAGCAGACAACGCCATCATCG
TCTCCGGATGTAAAAGTAAAACTTGAAGGGAGTGTCTTTCTTTTGGACCGTGAGTCAAACTCAG
ATGGCAGCTTTAATCGTAACGAATGGCAACAAGTTACTAAGGATTCTGACTTCATATCTGCCAG
CTGTGAGCAACAGCAAGACATTAGTGTGATGACAATTCCTGAGCATCCTGACATCCATGATTTA
GAGAAGTCTGTTTGGGAATTAGAAGGGATGCCACAGGACACATACAGCCAGCAGCTCCATAGCC
AGATACCAGAATCTTCTCTGAATGAAATACAAGCACAGTCTTCAGATCAGTTACCGTTGCAGTC
GGAACTGAAAGAGTTTGAGTCTTCTGTTTCCCAGACAAATGAAAGCTACTTTCCTTTTGATGAT
GAACTTACACAAGATAGCATTGTGGAAGAGCTGGTGCTTATGGAGCAGCAGATGTCAATGAATA
ACTCCCATTCTTATGGTAACTGCTTGGGAATGACCCTTCAGAGTCAGTCAGTAACTCCAGGAGC
TCCAATGTCATCTCATGGTTCCAGCTCTCACTTCTATCATCCAATCCATAGCAATGGCACTCCA
ATTCACACACCTACACCCACACCCACTCCTACACCAACTCCGACCCCAACTCCAACCCCAACAT
CTGAAATGATTGCTGGGTCTCAGAGTCTGTCACGGGAGAGCCCTTGTTCCAGGCTTGCCCAGAC
AACACCTGTGGATAGTGCTTTAGGAAGTAGCCGACACACACCCATTGGTACTCCTCATTCTAAT
TGCAGCAGTAGCGTCCCTCCAAGCCCTGTTGAATGCAGGAATCCATTTGCATTCACCCCAATAA
GCTCCAGTATGGCATATCACGATGCCAGCATTGTCTCAAGCAGTCCTGTAAAACCAATGCAAAG
ACCCATGGCCACTCACCCTGATAAAACCAAGCTTGAATGGATGAATAATGGGTATGGTGGGGTT
GGTAACTCATCAGTTTCTGGTCACGGCATTCTCCCAAGCTATCAGGAACTAGTAGAAGATCGTT
TCAGGAAACCTCATGCTTTTGCTGTGCCCGGACAGTCGTATCAGTCTCAGTCCAGACACCATGA
CACTCATTTTGGTCGTTTGACTCCCGTCTCTCCTGTGCAGCATCAAGGTGCCACTGTAAACACC
AACAAGCAAGAAGGGTTTGCAGTCCCCGCTCCTCTTGATAATAAAGGAACTAATTCATCTGCCA
GCAGCAACTTCAGGTGCCGGAGTGTAAGCCCTGCTGTCCATCGCCAACGGAATCTTAGTGGAAG
CACCCTCTATCCTGTGTCTAATATCCCACGGTCTAATGTAACCCCCTTTGGAAGTCCAGTGACC
CCAGAAGTTCATGTTTTCACAAATGTTCACACAGATGCATGTGCCAACAACATAGCTCAAAGAA
GTCAGTCAGTTCCATTAACAGTCATGATGCAGACAGCCTTCCCTAATGCTCTGCAGAAGCAAAC
AAACAGTAAAAAAATCACTAATGTTTTGTTGAGTAAACTCGATTCTGACAATGATGATGCAGTG
AGAGGTTTGGGAATGAACAACGTGCCCTCCAATTACACAGCCCGGATGAATCTCACTCAGATTT
TGGAAACTTCCCCTGTTTTTCCTAGTGCCAATTCACAAAATATGATCGATTCCAGCACTTCTGT
TTATGAATTCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCGATCAGATCAGTTTTTCT
CCTGGAGATAATCAAGCACAATCTGAAATTGGAGAACAGCAGTTAGATTTCAATAGCACTGTTA
AAGACCTGTTGAGTGGAGACAACCTGCAAACCAGCCAGCAGCTGGGAGGTCAGGTAGCATCTGA
TCTCACCAACACTGCATCTGATTTCCCTAGCGACATCAGGTTGTCTTCTGACCTCTCAGGCAGC
ATCAATGATTTGAACACCTTAGACCCAAATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAGG
ATGATGAAGCCACACTGGAAGAATTAAAGAATGACCCACTGTTTCAACAGATTTGCAGTGAGTC
AATGAACTCTATGACTTCATCAGGTTTTGAATGGATAGAAAGCAAGGACCATCCTACTGTTGAA
ATGTTGGGATGAATTGTGTTTTATATAATATGTAGCACACTGTATCTAAAGACATATGTATTGT
ATTTGTCTTAATGGAAGTGCCTCCCGCAGCAGAAACACTATTAATTGTAACATTTTAAAGGCGT
TTGCTGCAGAAGTGGTTTCTTCAGTAGGAAATGGTTAGACTTGCCTCAGTGCTGGACACGTTTC
TGAAGACAGTAGGCTGTAGAGCAAGTATTAGGTTTTAAATTTTATAATGTTTCCCATTTAATCA
CATTTGCTAGTAAAGAATCCAGCTTTTTACGAGAGCAGTCTGGGTCTTTTATTTTGTATAAGTT
CATTTTAACTCATCAGTTGATCTACACAGAAATTAAAAGACCATCCATTTTTAGTTGTAGGCTG
TTTTGTTGTTGGCATTATCTTTTAGGTATAAAATCATAGCTAAGGTAAACTGTAGGCAAGAGAG
TCTTCCTTAAAACAGGGATAATATTCAGGTTATTATAGATATTTAAGCTTGAAACATAAAGCTA
CTGTAGGATGAGAAATCTCTGTAGGACTTTCTGGGGCTTCGGTACCATTTACTCCCACAATGAA
GGGCTTATGTAGGGGAAAATAACGGAAAACAAACTTAATTTAAGGAAAGTAAAAGCTGCACTAA
AATGTTTAAGAGGAAAACCAGTAGCCATTTATTTGTGACATTGCATTAGTCCAGTTTTAGAAGG
TGGCTTTTAAAATGGAGCTCTCAAGCTCATGCACTCTGCCTCTCCCTCTCTCCCCCTCACCCTA
CTTTCCCCCTTTCCCTCCCTCCTATCTTCCCTCTTCCTCTCTTCTTCCCTCCCCTACACACACA
CAACATTAAGATTTAATAGAAGAAATACAAGCATGTTAGAAAATTGTCTCATGTTTTATTATTT
GCTTGCTGAGATTGGAGTGTTAGAAGGAAAATAGAGGACTTTTTTTTTTTTTAGTGTCTTCACC
ACAGCTCCATGTACATACTGAAATTCTACTGAAGAATTAATTATTTTTAATGCTTTTCACCATG
GTATCCTTTAGTAATCAGCTTTCCTCCTCCTCAGTTTGCTGACTAACTCTTTGCTTCTCTGAAC
GTAGTAATACAGTTTTATCATGAATCAAAACACCAAGCATGAAAGAGATAACATTAAAAGCCCA
GCAAAAAAGCATTTCTTCCCCTGAGGTCTGACACCTCGGATCTTCATATCTGATAAACCAAGAG
GATGTGATAGTACTTGAAGAGAGGAGCATTCATTACGTGCTTCACTTATTTATTCTGATGGACA
CAGTTGCAGACGAAGCAGAGCACTCAGGATTTGTTTTAAAGTGTTTCTCTGTGGCTCCCATTTT
GTTTTATGAATAGTATTTATGAATTTCATGTTAACACAAAACTAGTAGGCAGCTCCATTTAAGT
GAGTTTTAAGATAATTTTCAGAGATATTAAAGTTAACCCTAAGTTCTTAAAAGATAACATGAGA
ACATTCACTATACTCTCCTGACTAGCCAAGCTTTTCTTTTACCTTAATTCAAAAATAAATCAGA
AGACGACAAACTGAATATTTAACAAATAGGATAGAAGGGTTAATTTAATAAGGGTCCGTTGTTG
AGCAGATTTGAAAGTAGGGTATTAACATATTCTAATAAATCAATGGTGCTAGAGTTGGCTCAGA
GGTTTATCTAAGGATATGTCCTAGTTACTGGCATATGTGTGTGTTTGCTGTTAATTTGATTTAA
TGATTTGTTAGATTTTTTCTTGATACTAGTTATTTCTTCACTGTACATTGAGATACAGCACTAC
TGCACACCAAAGTATGTAATACCCAAAGGAGACTGTGTGATTTCTTGTAACAAATGATGGGAGT
CTTTCTCAGTGAGATACTCTGAAGAGGAGACTCTGAGGCCATTCTAATCCCTTGTTTACACTGT
TAGCTTCCTACTAATATAAAAATAATGGAAATCTTTTTTTGATAAAAAAAAAAAAAGTATAGAG
ACTGGAGGATTTTTACCCCTCGCCCCCTGTACAGTATTGCAGCAAACTCTTTAAATTTGGCTGA
ATTCGTCCAGCAAACTTTTTGGGGTTCATATTATTGCACTAAATTTGTTGAACCTGTGGTAGGC
ACATCTCTTAGGATAAATGCAACCAGTACAGTCCACAGATTAAAATTTTTAAATGTGTTTCATT
ATGAAAAGACAAAATATCATCAAAGTGACAGATGAAATTGTCTTATGTAGCAATGTGCACTGAT
CTCAATGAGATATTTCTATTTCTTATTCTCTTACACGAGAATATTACAGCAGGAAGAATTAAGT
TTAGTTTGCTTCACCATGTTAATACATGATCACAAGATGTGCATGAGTGTTCTTGACTTATCTT
GTACAGTACTAGGTAATCCTGTAACCACTTTTTTTCCCCTCTTGGCTGTATTGAAACTGGCTCT
GTGTTAACCAGGTGAGCATAGTTATTCACAGGTTATTTTGCTTCTTTTAATGTTTACTAATTCT
GCTTAGTTGTTAACTATGTTCTTTTCTTGGGATTTTTTTCATTGTTTTGACGTTTAAAACATTT
TGCATACTGTTTTATCATGATAAGACTTCATGAAGTAAATAATTTTGCATATAATTGCAATAAG
CACTGACTTTTGAACTGAGAAAGAAGGAGCGTGTTTTGTGCAGTGCATCTGAGGTTCAGATAAC
AGTCTTGTACTACAGCGTGCTTACTACACCAGAGGTGACAAAAGCAAGCCCTGTCGTGTGTTTC
CTTTAGTGCAGAGTCAGACCCTGGTGCTTTGTTGTCTGTTGTACCTGCTGAGATTACAGTAGTT
GAGCATCGCACAGTAGCATTTCAGTTCTCTTTTTTTATTAAAAGTGCTCAAATTGTTTTTTAAA
TGTTTTCAAGAACAATTAAAAACATTTTATATTATACTGA

hide sequence

RefSeq Acc Id:

XM_039081516 ⟹ XP_038937444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,175,049 - 82,219,769 (+)	NCBI
mRatBN7.2	8	73,294,355 - 73,339,084 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001120962	(Get FASTA)	NCBI Sequence Viewer
	XP_006243388	(Get FASTA)	NCBI Sequence Viewer
	XP_017451158	(Get FASTA)	NCBI Sequence Viewer
	XP_038937444	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58677	(Get FASTA)	NCBI Sequence Viewer
	EDL84133	(Get FASTA)	NCBI Sequence Viewer
	EDL84134	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069427
	ENSRNOP00000069427.1
	ENSRNOP00000099171
	ENSRNOP00000099171.1

RefSeq Acc Id:

NP_001120962 ⟸ NM_001127490

- UniProtKB:

E9PT49 (UniProtKB/TrEMBL), A6KEN2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEEQQQPPPQQLDAHQQLPLSAPNPGVALPALVPGLPGTEASALQHKIKNSICKTVQSKVDCI
LQEVEKFTDLEKLYLYLQLPSGLSSAEKSDQNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQE
VYDEYKSYCDNLGYHPLSAADFGKIMKNVFPNMKARRLGTRGKSKYCYSGLRKKAFVHMPTLPN
LDFHKTGDGLEGVEPSGQLQNIDEEVISSACRLVCEWAQKVLSQPFDTVLELAHFLVKSHYIGT
KSMAALTVMAAAPAGLKGISQPSAFIPTAESNSFQPQVKTLSSPIDAKQQLQRKIQKKQQEQKL
QSPLPGESSAKKTEGTTANGVANLPNGNPAILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMN
SSDGKVLPLNVQVVTQHMQSVKQTPKTPQNVPASPGGDRSARHRYPQILPKPANTSALTIRSPT
TVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNAPLKHSASVSNATGTTEDSRSIPQIK
NGSVVSLQSPGSRASSTGGTSAVEVKMEPEGSSDEHPLQCQENAEGTKAPLATSSALWGQKSNT
DGTVSKPSNEGVTEVKTTKVCDQRAKCKSRCNETLPGISAGNNQSTVTLSVATQNLPFTSTSSP
SNGDSVNKDPKLCTKSPRKRLSATLQESQVPPVKKPIVEQLSAVTTEGQKPGTVKKDQKVPHSG
KTESSTAGAQPPNKVSLSVSSHIVEDQPLNPTLVASESALEQQTTPSSSPDVKVKLEGSVFLLD
RESNSDGSFNRNEWQQVTKDSDFISASCEQQQDISVMTIPEHPDIHDLEKSVWELEGMPQDTYS
QQLHSQIPESSLNEIQAQSSDQLPLQSELKEFESSVSQTNESYFPFDDELTQDSIVEELVLMEQ
QMSMNNSHSYGNCLGMTLQSQSVTPGAPMSSHGSSSHFYHPIHSNGTPIHTPTPTPTPTPTPTP
TPTPTSEMIAGSQSLSRESPCSRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPF
AFTPISSSMAYHDASIVSSSPVKPMQRPMATHPDKTKLEWMNNGYGGVGNSSVSGHGILPSYQE
LVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGRLTPVSPVQHQGATVNTNKQEGFAVPAPLDNKG
TNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRSNVTPFGSPVTPEVHVFTNVHTDACAN
NIAQRSQSVPLTVMMQTAFPNALQKQTNSKKITNVLLSKLDSDNDDAVRGLGMNNVPSNYTARM
NLTQILETSPVFPSANSQNMIDSSTSVYEFQTPSYLTKSNSTDQISFSPGDNQAQSEIGEQQLD
FNSTVKDLLSGDNLQTSQQLGGQVASDLTNTASDFPSDIRLSSDLSGSINDLNTLDPNLLFDPG
RQQGQDDEATLEELKNDPLFQQICSESMNSMTSSGFEWIESKDHPTVEMLG

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RefSeq Acc Id:	XP_006243388 ⟸ XM_006243326
- Peptide Label:	isoform X1
- UniProtKB:	E9PT49 (UniProtKB/TrEMBL), A6KEN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEEQQQPPPQQLDAHQQLPLSAPNPGVALPALVPGLPGTEASALQHKIKNSICKTVQSKVDCI LQEVEKFTDLEKLYLYLQLPSGLSSAEKSDQNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQE VYDEYKSYCDNLGYHPLSAADFGKIMKNVFPNMKARRLGTRGKSKYCYSGLRKKAFVHMPTLPN LDFHKTGDGLEGVEPSGQLQNIDEEVISSACRLVCEWAQKVLSQPFDTVLELAHFLVKSHYIGT KSMAALTVMAAAPAGLKGISQPSAFIPTAESNSFQPQVKTLSSPIDAKQQLQRKIQKKQQEQKL QSPLPGESSAKKTEGTTANGVANLPNGNPAILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMN SSDGKVLPLNVQVVTQHMQSVKQTPKTPQNVPASPGGDRSARHRYPQILPKPANTSALTIRSPT TVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNAPLKHSASVSNATGTTEDSRSIPQIK NGSVVSLQSPGSRASSTGGTSAVEVKMEPEGSSDEHPLQCQENAEGTKAPLATSSALWGQKSNT DGTVSKPSNEGVTEVKTTKVCDQRAKCKSRCNETLPGISAGNNQSTVTLSVATQNLPFTSTSSP SNGDSVNKDPKLCTKSPRKRLSATLQESQVPPVKKPIVEQLSAVTTEGQKPGTVKKDQKVPHSG KTESSTAGAQPPNKVSLSVSSHIVEDQPLNPTLVASESALEQQTTPSSSPDVKVKLEGSVFLLD RESNSDGSFNRNEWQQVTKDSDFISASCEQQQDISVMTIPEHPDIHDLEKSVWELEGMPQDTYS QQLHSQIPESSLNEIQAQSSDQLPLQSELKEFESSVSQTNESYFPFDDELTQDSIVEELVLMEQ QMSMNNSHSYGNCLGMTLQSQSVTPGAPMSSHGSSSHFYHPIHSNGTPIHTPTPTPTPTPTPTP TPTPTSEMIAGSQSLSRESPCSRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPF AFTPISSSMAYHDASIVSSSPVKPMQRPMATHPDKTKLEWMNNGYGGVGNSSVSGHGILPSYQE LVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGRLTPVSPVQHQGATVNTNKQEGFAVPAPLDNKG TNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRSNVTPFGSPVTPEVHVFTNVHTDACAN NIAQRSQSVPLTVMMQTAFPNALQKQTNSKKITNVLLSKLDSDNDDAVRGLGMNNVPSNYTARM NLTQILETSPVFPSANSQNMIDSSTSVYEFQTPSYLTKSNSTDQISFSPGDNQAQSEIGEQQLD FNSTVKDLLSGDNLQTSQQLGGQVASDLTNTASDFPSDIRLSSDLSGSINDLNTLDPNLLFDPG RQQGQDDEATLEELKNDPLFQQICSESMNSMTSSGFEWIESKDHPTVEMLG hide sequence

RefSeq Acc Id:	XP_017451158 ⟸ XM_017595669
- Peptide Label:	isoform X1
- UniProtKB:	E9PT49 (UniProtKB/TrEMBL), A6KEN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEEQQQPPPQQLDAHQQLPLSAPNPGVALPALVPGLPGTEASALQHKIKNSICKTVQSKVDCI LQEVEKFTDLEKLYLYLQLPSGLSSAEKSDQNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQE VYDEYKSYCDNLGYHPLSAADFGKIMKNVFPNMKARRLGTRGKSKYCYSGLRKKAFVHMPTLPN LDFHKTGDGLEGVEPSGQLQNIDEEVISSACRLVCEWAQKVLSQPFDTVLELAHFLVKSHYIGT KSMAALTVMAAAPAGLKGISQPSAFIPTAESNSFQPQVKTLSSPIDAKQQLQRKIQKKQQEQKL QSPLPGESSAKKTEGTTANGVANLPNGNPAILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMN SSDGKVLPLNVQVVTQHMQSVKQTPKTPQNVPASPGGDRSARHRYPQILPKPANTSALTIRSPT TVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNAPLKHSASVSNATGTTEDSRSIPQIK NGSVVSLQSPGSRASSTGGTSAVEVKMEPEGSSDEHPLQCQENAEGTKAPLATSSALWGQKSNT DGTVSKPSNEGVTEVKTTKVCDQRAKCKSRCNETLPGISAGNNQSTVTLSVATQNLPFTSTSSP SNGDSVNKDPKLCTKSPRKRLSATLQESQVPPVKKPIVEQLSAVTTEGQKPGTVKKDQKVPHSG KTESSTAGAQPPNKVSLSVSSHIVEDQPLNPTLVASESALEQQTTPSSSPDVKVKLEGSVFLLD RESNSDGSFNRNEWQQVTKDSDFISASCEQQQDISVMTIPEHPDIHDLEKSVWELEGMPQDTYS QQLHSQIPESSLNEIQAQSSDQLPLQSELKEFESSVSQTNESYFPFDDELTQDSIVEELVLMEQ QMSMNNSHSYGNCLGMTLQSQSVTPGAPMSSHGSSSHFYHPIHSNGTPIHTPTPTPTPTPTPTP TPTPTSEMIAGSQSLSRESPCSRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPF AFTPISSSMAYHDASIVSSSPVKPMQRPMATHPDKTKLEWMNNGYGGVGNSSVSGHGILPSYQE LVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGRLTPVSPVQHQGATVNTNKQEGFAVPAPLDNKG TNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRSNVTPFGSPVTPEVHVFTNVHTDACAN NIAQRSQSVPLTVMMQTAFPNALQKQTNSKKITNVLLSKLDSDNDDAVRGLGMNNVPSNYTARM NLTQILETSPVFPSANSQNMIDSSTSVYEFQTPSYLTKSNSTDQISFSPGDNQAQSEIGEQQLD FNSTVKDLLSGDNLQTSQQLGGQVASDLTNTASDFPSDIRLSSDLSGSINDLNTLDPNLLFDPG RQQGQDDEATLEELKNDPLFQQICSESMNSMTSSGFEWIESKDHPTVEMLG hide sequence

Ensembl Acc Id:

ENSRNOP00000069427 ⟸ ENSRNOT00000086841

RefSeq Acc Id:	XP_038937444 ⟸ XM_039081516
- Peptide Label:	isoform X2
- UniProtKB:	A6KEN2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099171 ⟸ ENSRNOT00000141409

Protein Domains

RFX-type winged-helix

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PT49-F1-model_v2	AlphaFold	E9PT49	1-1459	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696115

Promoter ID:

EPDNEW_R6640

Type:

initiation region

Name:

Rfx7_1

Description:

regulatory factor X, 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	79,159,380 - 79,159,440	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308795	AgrOrtholog
BioCyc Gene	G2FUF-29878	BioCyc
Ensembl Genes	ENSRNOG00000060367	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086841	ENTREZGENE
	ENSRNOT00000086841.3	UniProtKB/TrEMBL
	ENSRNOT00000141409	ENTREZGENE
	ENSRNOT00000141409.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	6.10.140.1290	UniProtKB/TrEMBL
InterPro	RFX-like	UniProtKB/TrEMBL
	RFX_DNA-bd	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:315804	UniProtKB/TrEMBL
NCBI Gene	315804	ENTREZGENE
PANTHER	DNA-BINDING PROTEIN RFX7	UniProtKB/TrEMBL
	PTHR12619	UniProtKB/TrEMBL
Pfam	RFX5_N	UniProtKB/TrEMBL
	RFX_DNA_binding	UniProtKB/TrEMBL
PhenoGen	Rfx7	PhenoGen
PROSITE	RFX_DBD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060367	RatGTEx
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A6KEN2	ENTREZGENE, UniProtKB/TrEMBL
	B0BN42_RAT	UniProtKB/TrEMBL
	E9PT49	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Rfx7	regulatory factor X, 7	Rfxdc2	regulatory factor X domain containing 2 homolog (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Rfxdc2	regulatory factor X domain containing 2 homolog (human)	RGD1308795_predicted	similar to hypothetical protein FLJ12994 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308795_predicted	similar to hypothetical protein FLJ12994 (predicted)	LOC315804_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315804_predicted	similar to hypothetical protein FLJ12994 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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