Capsl (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 2 | 60,122,162 - 60,152,692 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 2 | 60,138,589 - 60,152,838 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 2 | 58,394,995 - 58,425,527 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 58,411,424 - 58,424,980 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 2 | 65,474,366 - 65,497,378 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 63,594,398 - 63,617,374 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 58,595,724 - 58,618,699 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 58,724,855 - 58,755,220 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 58,724,855 - 58,747,843 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 77,819,899 - 77,842,887 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 2 | 59,043,383 - 59,066,371 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 2 | 53,999,723 - 54,022,711 (+) | NCBI | | Celera | | | RGSC_v3.1 | 2 | 58,971,712 - 58,994,600 (+) | NCBI | | | | | Cytogenetic Map | 2 | q16 | NCBI | | | | |
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CAPSL (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 5 | 35,904,288 - 35,938,779 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 35,904,288 - 35,938,779 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 5 | 35,904,390 - 35,938,881 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 35,940,154 - 35,974,638 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 5 | 35,790,080 - 35,824,563 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | p13.2 | NCBI | | | | | HuRef | 5 | 35,854,292 - 35,888,775 (-) | NCBI | | HuRef | | | CHM1_1 | 5 | 35,907,097 - 35,941,574 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 36,152,562 - 36,187,050 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Capsl (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 15 | 9,436,136 - 9,466,125 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 15 | 9,436,114 - 9,466,124 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 15 | 9,436,016 - 9,466,039 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 15 | 9,436,028 - 9,466,038 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 15 | 9,365,783 - 9,395,790 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 15 | 9,380,753 - 9,410,760 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 15 | 9,235,758 - 9,265,478 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | A1 | NCBI | | | | | cM Map | 15 | 4.09 | NCBI | | | | |
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Capsl (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955426 | 20,840,414 - 20,862,357 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955426 | 20,833,508 - 20,862,356 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CAPSL (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 4 | 74,396,144 - 74,438,972 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 72,549,776 - 72,592,604 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 74,429,988 - 74,472,772 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 79,710,838 - 79,745,328 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 79,728,530 - 79,745,328 (+) | Ensembl | | | panPan2 | panpan1.1 |
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CAPSL (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 4 | 72,585,336 - 72,620,478 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 4 | 72,195,771 - 72,230,352 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 4 | 73,090,957 - 73,125,605 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 4 | 72,838,758 - 72,873,217 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 4 | 72,962,459 - 72,996,924 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 4 | 73,495,175 - 73,529,766 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Capsl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024407213 | 225,573,139 - 225,607,221 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936518 | 5,782,075 - 5,790,940 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936518 | 5,764,613 - 5,790,940 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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CAPSL (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 16 | 21,345,366 - 21,372,761 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 16 | 21,349,279 - 21,356,670 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 16 | 22,331,824 - 22,389,362 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CAPSL (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 4 | 34,741,243 - 34,787,457 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 4 | 34,750,358 - 34,763,725 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666071 | 25,060,350 - 25,106,598 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Capsl (Heterocephalus glaber - naked mole-rat) |
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Capsl (Rattus rattus - black rat) |
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