Rbm25 (RNA binding motif protein 25) - Rat Genome Database

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Gene: Rbm25 (RNA binding motif protein 25) Rattus norvegicus
Analyze
Symbol: Rbm25
Name: RNA binding motif protein 25
RGD ID: 1308755
Description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Predicted to be located in nuclear speck. Orthologous to human RBM25 (RNA binding motif protein 25); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC366693; RNA-binding protein 25
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86108,993,119 - 109,050,159 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6109,002,869 - 109,050,159 (+)EnsemblGRCr8
mRatBN7.26103,271,775 - 103,319,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,271,801 - 103,317,854 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,433,510 - 103,480,777 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06103,732,733 - 103,780,000 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,102,198 - 103,149,467 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,117,888 - 107,165,538 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06118,377,074 - 118,423,642 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46107,586,845 - 107,721,684 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,101,593 - 101,148,865 (+)NCBICelera
RGSC_v3.16107,590,251 - 107,725,372 (+)NCBI
Cytogenetic Map6q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aristolochic acid A  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
FR900359  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
methamphetamine  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nicotine  (ISO)
Nutlin-3  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
phenobarbital  (EXP,ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nuclear speck  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18663000   PMID:22206666   PMID:22658674   PMID:22681889   PMID:31505169   PMID:37736860   PMID:37953772  


Genomics

Comparative Map Data
Rbm25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86108,993,119 - 109,050,159 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6109,002,869 - 109,050,159 (+)EnsemblGRCr8
mRatBN7.26103,271,775 - 103,319,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,271,801 - 103,317,854 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,433,510 - 103,480,777 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06103,732,733 - 103,780,000 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,102,198 - 103,149,467 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,117,888 - 107,165,538 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06118,377,074 - 118,423,642 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46107,586,845 - 107,721,684 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,101,593 - 101,148,865 (+)NCBICelera
RGSC_v3.16107,590,251 - 107,725,372 (+)NCBI
Cytogenetic Map6q31NCBI
RBM25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381473,058,534 - 73,123,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1473,058,532 - 73,123,899 (+)Ensemblhg38GRCh38
GRCh371473,525,242 - 73,590,607 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361472,595,021 - 72,657,745 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1453,588,522 - 53,651,356 (+)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1453,691,205 - 53,753,905 (+)NCBIHuRef
CHM1_11473,463,625 - 73,526,981 (+)NCBICHM1_1
T2T-CHM13v2.01467,264,089 - 67,329,452 (+)NCBIT2T-CHM13v2.0
Rbm25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391283,678,990 - 83,729,901 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1283,678,010 - 83,729,897 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381283,632,208 - 83,683,127 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1283,631,236 - 83,683,123 (+)Ensemblmm10GRCm38
MGSCv371284,973,184 - 85,024,073 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361284,515,035 - 84,572,875 (+)NCBIMGSCv36mm8
Celera1285,078,728 - 85,129,614 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1238.81NCBI
Rbm25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555232,213,766 - 2,270,597 (-)Ensembl
ChiLan1.0NW_0049555232,213,766 - 2,270,417 (-)NCBIChiLan1.0ChiLan1.0
RBM25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21574,167,792 - 74,274,653 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11473,384,403 - 73,450,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01453,638,300 - 53,703,498 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11472,498,805 - 72,563,611 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1472,498,795 - 72,563,611 (+)EnsemblpanPan2panpan1.1
RBM25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1846,442,233 - 46,486,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl846,433,603 - 46,484,564 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha846,113,504 - 46,167,902 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0846,655,863 - 46,710,540 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl846,655,866 - 46,709,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1846,323,664 - 46,378,528 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0846,340,177 - 46,394,742 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0846,731,413 - 46,785,821 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbm25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864029,607,885 - 29,673,496 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364882,395,467 - 2,458,367 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364882,395,451 - 2,458,367 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl796,406,646 - 96,471,349 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1796,406,650 - 96,468,172 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27102,193,949 - 102,255,866 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12450,307,718 - 50,384,087 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2450,307,790 - 50,382,521 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605338,499,653 - 38,567,665 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473428,281,876 - 28,339,689 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473428,279,848 - 28,342,283 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbm25
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1797,726,586 - 97,774,233 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbm25
617 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:163
Interacting mature miRNAs:182
Transcripts:ENSRNOT00000003832, ENSRNOT00000003834
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
RH130009  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,267,595 - 10,267,789 (+)MAPPERmRatBN7.2
Rnor_6.01010,457,862 - 10,458,055NCBIRnor6.0
Rnor_5.0109,232,274 - 9,232,467UniSTSRnor5.0
RGSC_v3.41010,378,012 - 10,378,205UniSTSRGSC3.4
Celera109,234,422 - 9,234,615UniSTS
RH 3.4 Map1099.73UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map6q24-q31UniSTS
BF397967  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map10103.13UniSTS
Cytogenetic Map6q24-q31UniSTS
RH142964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,311,010 - 103,311,179 (+)MAPPERmRatBN7.2
Rnor_6.06107,157,501 - 107,157,669NCBIRnor6.0
Rnor_5.06118,384,943 - 118,385,111UniSTSRnor5.0
RGSC_v3.46107,713,647 - 107,713,815UniSTSRGSC3.4
Celera6101,140,828 - 101,140,996UniSTS
RH 3.4 Map6741.4UniSTS
Cytogenetic Map6q24-q31UniSTS
RH138633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,299,953 - 103,300,136 (+)MAPPERmRatBN7.2
Rnor_6.06107,145,881 - 107,146,063NCBIRnor6.0
Rnor_5.06118,395,563 - 118,395,745UniSTSRnor5.0
Celera6101,129,778 - 101,129,960UniSTS
RH 3.4 Map6734.8UniSTS
Cytogenetic Map6q24-q31UniSTS
RH140810  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,267,597 - 10,267,807 (+)MAPPERmRatBN7.2
Rnor_6.01010,457,864 - 10,458,073NCBIRnor6.0
Rnor_5.0109,232,276 - 9,232,485UniSTSRnor5.0
RGSC_v3.41010,378,014 - 10,378,223UniSTSRGSC3.4
Celera109,234,424 - 9,234,633UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map6q24-q31UniSTS
UniSTS:478978  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81010,773,745 - 10,774,344 (+)Marker Load Pipeline
mRatBN7.21010,267,259 - 10,267,859 (+)MAPPERmRatBN7.2
Rnor_6.01010,457,526 - 10,458,125NCBIRnor6.0
Rnor_5.0109,231,938 - 9,232,537UniSTSRnor5.0
RGSC_v3.41010,377,676 - 10,378,275UniSTSRGSC3.4
Celera109,234,086 - 9,234,685UniSTS
Cytogenetic Map10q12UniSTS
Cytogenetic Map6q24-q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000003834   ⟹   ENSRNOP00000003834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,284,849 - 103,317,854 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113578   ⟹   ENSRNOP00000097947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,271,801 - 103,317,854 (+)Ensembl
RefSeq Acc Id: NM_001395131   ⟹   NP_001382060
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,002,891 - 109,050,159 (+)NCBI
mRatBN7.26103,271,776 - 103,319,050 (+)NCBI
RefSeq Acc Id: XM_039112644   ⟹   XP_038968572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,001,489 - 109,050,108 (+)NCBI
mRatBN7.26103,271,795 - 103,319,050 (+)NCBI
RefSeq Acc Id: XM_039112645   ⟹   XP_038968573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,002,888 - 109,050,108 (+)NCBI
mRatBN7.26103,271,796 - 103,319,050 (+)NCBI
RefSeq Acc Id: XM_039112647   ⟹   XP_038968575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,002,890 - 109,050,108 (+)NCBI
mRatBN7.26103,271,775 - 103,319,050 (+)NCBI
RefSeq Acc Id: XM_063262223   ⟹   XP_063118293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,001,489 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262224   ⟹   XP_063118294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,002,890 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262225   ⟹   XP_063118295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,001,489 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262226   ⟹   XP_063118296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,014,718 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262227   ⟹   XP_063118297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,020,283 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262228   ⟹   XP_063118298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,020,283 - 109,050,108 (+)NCBI
RefSeq Acc Id: XM_063262229   ⟹   XP_063118299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,993,119 - 109,035,877 (+)NCBI
RefSeq Acc Id: XP_038968575   ⟸   XM_039112647
- Peptide Label: isoform X3
- UniProtKB: A6JDQ4 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968572   ⟸   XM_039112644
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMR5 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968573   ⟸   XM_039112645
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMR5 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000003834   ⟸   ENSRNOT00000003834
Ensembl Acc Id: ENSRNOP00000097947   ⟸   ENSRNOT00000113578
RefSeq Acc Id: NP_001382060   ⟸   NM_001395131
- UniProtKB: A6JDQ4 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118299   ⟸   XM_063262229
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118293   ⟸   XM_063262223
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMR5 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118295   ⟸   XM_063262225
- Peptide Label: isoform X3
- UniProtKB: A6JDQ4 (UniProtKB/TrEMBL),   F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118294   ⟸   XM_063262224
- Peptide Label: isoform X2
- UniProtKB: F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118296   ⟸   XM_063262226
- Peptide Label: isoform X4
- UniProtKB: F1LT30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118297   ⟸   XM_063262227
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118298   ⟸   XM_063262228
- Peptide Label: isoform X5
Protein Domains
PWI   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT30-F1-model_v2 AlphaFold F1LT30 1-315 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308755 AgrOrtholog
BioCyc Gene G2FUF-36853 BioCyc
Ensembl Genes ENSRNOG00000002874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003834 ENTREZGENE
  ENSRNOT00000003834.9 UniProtKB/TrEMBL
  ENSRNOT00000113578 ENTREZGENE
  ENSRNOT00000113578.2 UniProtKB/TrEMBL
  ENSRNOT00000138244.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  PWI domain UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  Pre-mRNA_splicing_reg UniProtKB/TrEMBL
  PWI_dom UniProtKB/TrEMBL
  PWI_dom_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM25_RRM UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene 366693 ENTREZGENE
PANTHER RBM25 PROTEIN UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 25 UniProtKB/TrEMBL
Pfam PWI UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Rbm25 PhenoGen
PROSITE PWI UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002874 RatGTEx
SMART PWI UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF101233 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A8I6GMR5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M0B1_RAT UniProtKB/TrEMBL
  A6JDQ4 ENTREZGENE, UniProtKB/TrEMBL
  F1LT30 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rbm25  RNA binding motif protein 25   Rbm25_predicted  RNA binding motif protein 25 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rbm25_predicted  RNA binding motif protein 25 (predicted)      Symbol and Name status set to approved 70820 APPROVED