Pamr1 (peptidase domain containing associated with muscle regeneration 1) - Rat Genome Database

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Gene: Pamr1 (peptidase domain containing associated with muscle regeneration 1) Rattus norvegicus
Analyze
Symbol: Pamr1
Name: peptidase domain containing associated with muscle regeneration 1
RGD ID: 1308745
Description: Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular region. Orthologous to human PAMR1 (peptidase domain containing associated with muscle regeneration 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inactive serine protease PAMR1; LOC311252; Ramp; regeneration associated muscle protease; RGD1308745; similar to E430002G05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,340,411 - 109,443,595 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3109,341,476 - 109,443,585 (+)EnsemblGRCr8
mRatBN7.2388,889,061 - 88,988,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx392,387,904 - 92,487,708 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,986,927 - 101,086,728 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,811,151 - 98,910,788 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,403,533 - 92,502,094 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)Ensemblrn6Rnor6.0
Rnor_5.0399,053,895 - 99,152,100 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4387,754,805 - 87,847,008 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera387,981,613 - 88,064,531 (+)NCBICelera
RGSC_v3.1387,651,265 - 87,749,636 (+)NCBI
Cytogenetic Map3q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[ghi]perylene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
cytarabine  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ferric oxide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
glycidyl methacrylate  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
inulin  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
mifepristone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24006456  


Genomics

Comparative Map Data
Pamr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,340,411 - 109,443,595 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3109,341,476 - 109,443,585 (+)EnsemblGRCr8
mRatBN7.2388,889,061 - 88,988,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx392,387,904 - 92,487,708 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,986,927 - 101,086,728 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,811,151 - 98,910,788 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,403,533 - 92,502,094 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)Ensemblrn6Rnor6.0
Rnor_5.0399,053,895 - 99,152,100 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4387,754,805 - 87,847,008 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera387,981,613 - 88,064,531 (+)NCBICelera
RGSC_v3.1387,651,265 - 87,749,636 (+)NCBI
Cytogenetic Map3q32NCBI
PAMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,431,827 - 35,530,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,431,823 - 35,530,300 (-)Ensemblhg38GRCh38
GRCh371135,453,374 - 35,551,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,409,950 - 35,503,752 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1135,600,693 - 35,694,461 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1135,152,434 - 35,245,723 (-)NCBIHuRef
CHM1_11135,451,766 - 35,545,552 (-)NCBICHM1_1
T2T-CHM13v2.01135,570,662 - 35,669,082 (-)NCBIT2T-CHM13v2.0
Pamr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,380,325 - 102,473,386 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,380,357 - 102,473,386 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382102,549,939 - 102,643,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,550,012 - 102,643,041 (+)Ensemblmm10GRCm38
MGSCv372102,390,178 - 102,483,198 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362102,350,889 - 102,443,876 (+)NCBIMGSCv36mm8
Celera2103,792,684 - 103,881,952 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
Pamr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,828,428 - 10,913,309 (+)Ensembl
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBIChiLan1.0ChiLan1.0
PAMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,652,298 - 37,746,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,656,964 - 37,750,855 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,404,636 - 35,498,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,279,219 - 35,373,862 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,279,225 - 35,373,862 (-)EnsemblpanPan2panpan1.1
PAMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,476,285 - 32,548,486 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,356,982 - 32,575,904 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1832,083,269 - 32,155,630 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01833,001,996 - 33,159,485 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,001,807 - 33,159,485 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,563,270 - 32,720,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,148,543 - 32,305,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,793,954 - 32,951,132 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pamr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,559,743 - 29,639,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,684,479 - 2,764,874 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,684,826 - 2,764,682 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,514,193 - 25,591,617 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1225,422,390 - 25,591,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,785,480 - 27,954,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,732,311 - 29,833,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,774,155 - 29,833,117 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038126,853,740 - 126,951,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pamr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,681,203 - 11,754,194 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476711,681,209 - 11,753,310 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pamr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1580,396,556 - 80,484,379 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pamr1
2760 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:209
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000064282
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH132246  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2388,988,398 - 88,988,602 (+)MAPPERmRatBN7.2
Rnor_6.0392,501,878 - 92,502,081NCBIRnor6.0
Rnor_5.0399,151,884 - 99,152,087UniSTSRnor5.0
RGSC_v3.4387,853,520 - 87,853,723UniSTSRGSC3.4
Celera388,071,029 - 88,071,232UniSTS
RH 3.4 Map3670.4UniSTS
Cytogenetic Map3q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 33 59 6 297 133 11 142 81 90 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064282   ⟹   ENSRNOP00000059877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3109,341,476 - 109,443,585 (+)Ensembl
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)Ensembl
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125020   ⟹   ENSRNOP00000098929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3109,343,607 - 109,443,585 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138141   ⟹   ENSRNOP00000111944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3109,343,958 - 109,443,585 (+)Ensembl
RefSeq Acc Id: NM_001107755   ⟹   NP_001101225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83109,344,046 - 109,443,595 (+)NCBI
mRatBN7.2388,889,061 - 88,988,615 (+)NCBI
Rnor_6.0392,403,649 - 92,495,366 (+)NCBI
Rnor_5.0399,053,895 - 99,152,100 (+)NCBI
RGSC_v3.4387,754,805 - 87,847,008 (+)RGD
Celera387,981,613 - 88,064,531 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283704   ⟹   XP_063139774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83109,340,411 - 109,443,595 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139774 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79641 (Get FASTA)   NCBI Sequence Viewer  
  EDL79642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059877
  ENSRNOP00000059877.3
  ENSRNOP00000098929
  ENSRNOP00000098929.1
  ENSRNOP00000111944.1
RefSeq Acc Id: NP_001101225   ⟸   NM_001107755
- Peptide Label: precursor
- UniProtKB: D4A0A3 (UniProtKB/TrEMBL),   A6HNP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059877   ⟸   ENSRNOT00000064282
RefSeq Acc Id: XP_063139774   ⟸   XM_063283704
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000111944   ⟸   ENSRNOT00000138141
Ensembl Acc Id: ENSRNOP00000098929   ⟸   ENSRNOT00000125020
Protein Domains
CUB   EGF-like   Peptidase S1   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0A3-F1-model_v2 AlphaFold D4A0A3 1-720 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692248
Promoter ID:EPDNEW_R2773
Type:multiple initiation site
Name:Pamr1_1
Description:peptidase domain containing associated with muscle regeneration1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0392,403,664 - 92,403,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308745 AgrOrtholog
BioCyc Gene G2FUF-48595 BioCyc
Ensembl Genes ENSRNOG00000005348 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064282 ENTREZGENE
  ENSRNOT00000064282.4 UniProtKB/TrEMBL
  ENSRNOT00000125020 ENTREZGENE
  ENSRNOT00000125020.1 UniProtKB/TrEMBL
  ENSRNOT00000138141.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro CUB UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Serine_Protease_S1-Domain UniProtKB/TrEMBL
  sperma_CUB_dom UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
KEGG Report rno:311252 UniProtKB/TrEMBL
NCBI Gene 311252 ENTREZGENE
PANTHER INACTIVE SERINE PROTEASE PAMR1 UniProtKB/TrEMBL
  PROTHROMBIN UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PhenoGen Pamr1 PhenoGen
PROSITE CUB UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005348 RatGTEx
SMART CCP UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  SSF50494 UniProtKB/TrEMBL
UniProt A0ABK0L414_RAT UniProtKB/TrEMBL
  A0ABK0M8E8_RAT UniProtKB/TrEMBL
  A6HNP0 ENTREZGENE, UniProtKB/TrEMBL
  A6HNP1_RAT UniProtKB/TrEMBL
  D4A0A3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-10-22 Pamr1  peptidase domain containing associated with muscle regeneration 1  Ramp  regeneration associated muscle protease  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-18 Ramp  regeneration associated muscle protease  RGD1308745_predicted  similar to E430002G05Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1308745_predicted  similar to E430002G05Rik protein (predicted)  LOC311252_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311252_predicted  similar to E430002G05Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL