Advanced Search (OLGA)

Gene: Zfp563 (zinc finger protein 563) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Zfp563

Name:

zinc finger protein 563

RGD ID:

1308729

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC314584; RGD1308729; similar to ZFP-like protein

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	ZNF563 (zinc finger protein 563)	HGNC	HomoloGene
Homo sapiens (human):	ZNF121 (zinc finger protein 121)	HGNC	Panther
Alliance orthologs ³
Mus musculus (house mouse):	Zfp563 (zinc finger protein 563)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp563 (zinc finger protein 563)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF563 (zinc finger protein 563)	Alliance	DIOPT (HGNC)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	12,849,136 - 12,916,486 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	12,874,595 - 12,911,342 (+)	Ensembl				GRCr8
mRatBN7.2	7	12,198,411 - 12,266,003 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	12,244,675 - 12,266,003 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	15,049,170 - 15,066,685 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	16,926,566 - 16,944,081 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	14,807,341 - 14,824,937 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	15,364,082 - 15,430,986 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	15,422,479 - 15,425,802 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	15,528,924 - 15,601,988 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	13,827,402 - 13,845,718 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	10,341,907 - 10,359,385 (+)	NCBI		Celera
RGSC_v3.1	7	13,806,238 - 13,839,590 (+)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

bisphenol A (EXP)

endosulfan (EXP)

furan (EXP)

glycidol (EXP)

paracetamol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

Variants in Zfp563
584 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	476
Count of miRNA genes:	260
Interacting mature miRNAs:	331
Transcripts:	ENSRNOT00000066520
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH144088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	12,263,297 - 12,263,558 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	15,428,281 - 15,428,541	NCBI	Rnor6.0
Rnor_5.0	7	15,599,283 - 15,599,543	UniSTS	Rnor5.0
RGSC_v3.4	7	13,843,013 - 13,843,273	UniSTS	RGSC3.4
Celera	7	10,356,664 - 10,356,924	UniSTS
RH 3.4 Map	7	65.2	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	85	59	6	348	185	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066520 ⟹ ENSRNOP00000061844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	15,422,479 - 15,425,802 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103954 ⟹ ENSRNOP00000092542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	12,244,675 - 12,266,003 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150924 ⟹ ENSRNOP00000108913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	12,874,595 - 12,911,342 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000171772 ⟹ ENSRNOP00000105383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	12,892,041 - 12,911,342 (+)	Ensembl

RefSeq Acc Id:

NM_001134561 ⟹ NP_001128033

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	12,898,891 - 12,916,486 (+)	NCBI
mRatBN7.2	7	12,248,407 - 12,266,003 (+)	NCBI
Rnor_6.0	7	15,413,928 - 15,430,986 (+)	NCBI
Rnor_5.0	7	15,528,924 - 15,601,988 (+)	NCBI
RGSC_v3.4	7	13,827,402 - 13,845,718 (+)	RGD
Celera	7	10,341,907 - 10,359,385 (+)	RGD

Sequence:

show sequence

TTGGCCCTAGGAGCCGGGGGGTGAGGCCGCAGGAGTCTCCAGGAACAGACATGGACTGTCTAAC
TTTTGAGGATGTGGCTGTGAACTTCACCTTGGAGGAGTGGGATTTGCTGGATCCTTCCCAGAAG
CAACTCTACACAGATGTCATGCAGGAAACCTTCAAAAACCTAATTGCTATAGGACAAATTGAGG
AAGGCCGGAGGAGTAAAGATGATGATGAAGAGTCTAGGAGAAGTCTGAGAAGTGGACTGGTGGA
ATTGTTGTGTAAACCCAGAGAAAGTAGACAATGTGAAGAAATCTTCAGCGAGTTTCCAGATACT
GTGGTGAATAAGAAAACCCCTCATGGAGTAAAACTGTGTGAAAGTCATTTATGTGAAGACATAC
TTATCGGTCTCCCACCCCTGAATATGCATATTCCTGTTCAACGAGGACATAGACCATATGAATA
TGAGACATATGAAGACAGTCTCTATAAATTTAGGGAGTGTGGGAAAGCCTTCCTGTATTCTGAA
TGCTATCTGAAGCATGAAAATGCTCACATCATAGAGAAACCGTATAAATGTCAACAATGTGGGA
AAGCCTTTTCTTCTTCAAGTAAGGTTCGAAGACATGAAAGAACTCACACTGGTGAGAAGCCCTA
CATGTGTAACCATTGTGGGAAAGCCTTCCCTAGTCGTGGCTCCCTTCGCCGTCATGACAGGATT
CACAGTGGAGAGAAGCCCTTTGTGTGTAAGTATTGTGGGAAAGCTTTCACCGGTCAGAGTTCAC
TTCCACGCCATGAAAGAATTCACAGTGGAGAGAAACCCTATGTCTGCAAATACTGTGGCAAATG
TTTCATTTCTTCAAGTACCTGTCGAGTACACGAACGGACTCACACTGGAGAGAAACTCTATGTT
TGTAATCTGTGCAATAAAGCTGTCACTACTCGTACTTCCCTTCGAAATCATGAACGAATTCACA
GTGGTGAGAAACCCTATGTTTGCGAACAGTGTGGGAAAGGTTTCATCTCCTCTGGTACCTTTCG
AATACACGAACGAATTCACACTGGGGAGAAACCCTATAGATGTAAGGAATGTGGTAAAGCCTTC
ACTATACAGAGTTCTCTCCAACGCCATGAAAGGATTCACACTAGGGAAAAACCCTATGACTGTA
AGGAATGTGGGAAAGCCTTCAGTGGTTACAGCTCCCTTCGACGCCACGAAAGGATTCACAGTGG
AGAAAGACCCTATGCATGCAAGCAGTGTGGCAAAGCTTTTCCTGCCTTGGGTGATTGTCAGAGA
CATGAGCAAATCCACACTGGTGAGAAGCCCTATATATGTAAGCAGTGTGGGAAAGCCTTTACTC
GTTGTGGTTCCCTCAGAATACATGAAAAGACCCATGCTAGACAGAATTCCTAAGCATAAAATGT
GAAAGAACTCCTTGTCGCGTGCCCTTTCTAAAAAAAAAAAAAAAAAACTGTTACAATGTTTAGG
GAAGAAAACAAGTATATCAAGTTATGAGGGCTGCCACTGGTCATACTGTTAAATTAACAAAAAG
GACAAGCTAAGAACTCACCCAATATCAAAACTTGCTCAGAAAGTTGACTGTAAGAAATAGTTTT
AAAATTCTGTACTACCTGAGGATTTTCACATAAGTTTCACTAGCTCATAAATGTACACTGTGAA
AGGTTCAATGCAAAGTAATTTATGTAGAATGCTCCAAAAATTACATAACCCGAAGGAAAACATC
CTAAAATTATATTACACTGATTAGTTTATTACTAAAATAGATATACAAACTATTTCTAAGTATA
ACTCCTGTAAATAAATGGTGGCATGACATAATTCTGTGAAGTTTGCTTAAGCAATGGAGCAAGA
GAGTTTTTTTTTTTAACCCTGTTCATTACCATTCTGAAGATTTTGGTTGTCTGAATGGTGGAAT
GGCCTTTTGAGATGTAGTTATGGCAAATAACAACACATGAGTTGGCACTAGGTCACAGTTCCAG
GACAAGGTCCTCCAGAATGATGGGTGTGCTCTAAATTGGCATCTCACACAATACTGTCTCTCTC
ATGGGCCTAGGAATCAAGTGGGGGTGGGGATCACCCCTATAACTCACTAGCAAACACTGTTTTC
GTGTTCTGTAGATATGAAGGTTCTACCACGAGGAACACCCATTCCTTTGAACTGGAAACTAAGG
CACCCACACATATCCAACCCCATACCAATTTACTCTGCGTTCCTTGTGCCCTTGAGTTAACTAA
AAATTGTTACTGTCAACTGGAATTACAGATCCACATGACCAGTGGGGAATGAAAACACCATTTA
GCAATGGAGATGTTCTGATTATTTTTTGTCTACTTTACACAATCTAGAGTTATCTGGAAAGAGA
AATCACCATTAGATTGACCTGTAGACAATGATGTATGGGACAGGGCTACTGTGGGTAGTGCCAC
TCCTGGGCAGGTGGCCCTGTGTTGTATAAGAAAGCAGGCTAAGTGGCCATGAGGAGCAAGCCAA
GACTCAAGACTTCCTCCATGGTCTCTGCTTCAGATCCTACTTCCAAGTTCCAAGTTCCTGCCTT
AAGATTCTACCCTGGTTTCTCTTGGGGCTGGAATATAAACGATAATGAAAACATCCTTTTTTCC
TCAAATCAATTTGGTCAGTGTTTTAGCAACAGCAACAATAACTCAAACTAGGACACAAGGAAAG
GAAGACTATTCCTGGATTTCCTTGTCATTGCTGTGTCTGGTGATTAAAACCCATGGGGAGCTAC
AACTCGGTCCAAACAGGGTAAGAAAGAATGGAAGTGTGAACTACTTGTAAAGAGCTAGTTGATT
TGGGGATATGATGTTTTTATTTACTTACTTCCAAGTAAGGTTTTTTATACTAAAAATTGATATT
AAATTAAAATTTTAAAAATCAAGATGCTTAGTGTTTGCTAAAGAGGAAGAAATACAAAATGATA
TGAGAAGGTACTTATAAATATGGTATGCCTACAGTTGTAGAAGTGAGGATTCTAATTATATTGG
GTCTTATTTTGTTAAGAGTATGTATGTTGGACTGGGTGTGGTGGCATATTCCTTTAATCCCAGC
ACTCAGGAGACAAAGGCAAATGACTTAATTCAAGACCAACTTGGTTGACATAGTGAATTCCAGA
ACAGCCAGGGATATAGAGGGAGACCTTGACTCAAAAACAACGGAAGAAAAGAATATGGGTTTAC
TTTTATACTTGATAGTGTTGATTGCCAATGTGACAAATCTAAAATCACCTGTGAGACGGGCCCC
TGAGAGTGCCTGTGGTCAGTTATCTTGATTGCATAAATGAGGTGGGCTCTCCTCCTGTTGGAAG
TTCCATTTCCTGACTGGAATCCACGAGTGTATACAAGTGCAGAGCTAACTATCTGAGCGCAAGC
ATACATGCATTGATTTACTGCTCTCTGCTTTTGACTGTGGATGTAATGTGAGAGCTGCTCAAGT
TACTGCCATATTGACTTCCCCACAGTGATGGAATTATGAGCCAAATAAACCCCCTTCCCTTTAT
GTTGCTTTTACCTGGATATTTTGTCACTATGACAGGAAGTGAGGCTAAGACATATACACACACA
TAGTAAGCAGATATTCATGTTTTCTTTTGTCTCATCCTTTACCATGTAATCTGTTTATTGATTT
AATAAGACGGTATTGCTATGTATTTTCGTATTTAGTTATGGTATAATAAGTGAATAAGCTTTCC
TCAGGGGACTTTGACACCCATTCTGAGGAAGCACCACGTTTTCATTTGTACATGAAAGTCACAT
TAGGTGAGATAACTTTGTTATTGTCTTTATTTAAAATTGTGTATAACATAGGTTATTGGATGTC
AAAGGAGGGACTAGCGGTGGTTGTTCTTGGTTGTTCTCTTGACTGGTGAAACGCACCTGGATAT
TGGTGAGGAAATCTCCACAGAAGAAGTGATATGTAGGACAGTGACTTGGAGGGGAAAACTCATA
TTCAATGTGGGCAGCGATTCCTAACAACATCCTGGATGAAGTCTCAGGAAAAAACAGCAGGCAC
ATACCTGCCTTCCCTTTGGTTTGAGTGCATCTGTTGATGCTACTGTGATCTCCTGTCTTCTTCC
TCTTGACTGGGACTTAGTTCTAGTGACGTTCGAGGAGCCTCCAGTATTTCGGCCTCAGATCAGG
GCCCCTGAGGCATTTAGCTTTTAGAGTGGGCAGCTAGCAAATTCTCTGCTCTCTGCTACAAGCA
GCCCCTATCATGTATGACAATCTAGTAAATACCTTCTTTAATAATTATCTTGGTTCTATTTGGA
GATCTCTGATATCTGATTAATTGAAAGAGAAATTTTGCTTTTTCAGCTTTACAAAATTTATTCA
ATTTTACACATTTCAAAGACACGTACAGAATGTTTGGGGCTTTGGTGTTTTGTTTTATTATTTG
GTCTGGATCCATACTACGAATTAAGAACTATCTACCTTTTAAAAGTCTGTGTGTAGATATGTAT
GTGCTCAGAACATGGGTGTAGGTCGGGTGTCGGTCTTCACCTTCCCTCTTCCTGAGGCAGGGTC
TCGTTTCTGCTGCATCTGCTAGCGGACCCGTGAACTTCCGGGGCTTCTGCTTCTACTTCCTGTC
TTGTAGAAATACAGGGTCACAGGTGTGTGACTGCCGCTTCTGGGCTTCACTTAGGTTCTGGAGG
GGTTTAACTCAAGTCTTCTCACTGGGCAATCCTTTATCTACAACTATTGCTCAACCAGAATTAT
ATATTTTTGCAAGTGCGTTAACATTTCTCATCATAAAATATGCTGTTCCTAAGTAAGTGTGTGG
TTCATTCCAGTCATCTGGACGAGTTTTAGCTTTTATATCTTAGATACTCAAGTGTTTCCTATGA
TGCACTGAACAGTCTTCCAGTAAATACAAAATGTTCTTCAAATTTGGTAATATTTGCTTTTATG
AACTCACAGTGAAATGAGTTCATAACTTGAAATTGAAAACTACTGAACTCCAAAGCTAAGTTCA
GGCTAAATTGAAAAATGTTCAAATGGAAGCATGCCAGAAGGAGAAAATTATGGAAAACGAAACA
CGGGCACACACACACACACACACACACACACACACACACACACACACACGCAGAGTCTCTGATT
CTCTTTGCTCATAAAAGCAGGAAACATGAGGTACCATTGGTAAAACTCAAATTGAAAAGCTTGC
CATGGTAGTGCACACCTTTAACTCCCCAATATTTGGGAGTCAGAGGCAGGAGGTTCTCTATGAG
TTCAAGACCAGCCTAATCTGCACAGTGAGACCCTGTGTCATAAGTAGAGAAGAACAAAGAAGGA
AGAAGAAGAAAAAGAAAACAAATTTCCTTGTTTAAGACTAAAATGATGTATAATCTTGACTTTC
TAGCATTCGCCTCTTATTCCCAAATCTGTACAATTAGCCACAGAAGTCTGCCTCACTACAAATG
TGTTTATCAAACAGAATTCTTTAACTTTTAAGTTTTGTCATGGACTGTACTCTCTAAGAAGTGC
TTTTAAAAGGGTTTGTTTACTGGGGGAAGGAATGAAGGGGGTCTAAGCAACCTTTAAAGGAATT
ATTTGAGAGCCACCAAAATAAACACATCCATTATAAAGCCATTTAATTGCAACTCTCCATTGAG
AAGCCCACCTCCATACTCTTGGTTATACCGTTTTCTTCTTCCCTTGAGCCCCTTTCTATTTTAA
TCTCAAATCTACATTGGCTGAGCCTGAAATTCTTTTCCTCATCAAAGCCATGAATCCTACTTTT
TCTTGGTGACTGCGTGCTGTGAAACTGTCTTCCTACCTGCAATGACAGCTCATTTCCACTAACC
TATATTTGGACAAAAATCACCTGTCTGATTTTAATTAAGCCATTGGATGGCTTAATTAATTGAC
TTTCATACTGCTGTATGGTGTGAGGGCAACTTTATGCTCGTTCAAATGATCTGTGCTTTACCTG
GTTTCTGTGCGTCAGAATCGTCCAAAAGTACACTGCATATTGATGTCCAGTTTAAGATCACCCT
TTGAAAGTCAGTAGCATTTCCTCATTCTTTTGTTTATGTGTTGCCCACATGAGTTTATAGGTAC
TACAGGAGTATGTGGCAGGGGAGATCAGAAGACAGGGCTGGCTCCCCTGTAGTTGGAGGCAGTT
GTGAGTCACCTGTTGTGACTGCTGGGAACTGAGTCTGGGTCCTCAGCAACAGTGGTGTATCCAT
TTACTCTTCTGTTTCGATGGTAAAATATCCAAACCTAAGTCTTTTCCAGTCCCAAGTTTTTGTT
GTTGCTGTTGTTGTTTTGGTCCGTATTTTATTGCAACAGAAAGTAAACTACAAAAAACAAACAA
ACAAACAAAAAAACCAAAAAAACCCCCCAAAAACCCAAAACAAACAAACAAACAAACAAACAAA
CAAAAAACAGCGAGCCATCTCTCCAGCCCCTCGATAGCATTTTCTGATCAGTGAATTATGTTTC
CCAACCACTAAAAAACAAAACAAAACAAAACAAAACTCTAAAGACTGACTATTGCGAGTAACTG
ATCATCCTTTTTCTGTTAAAATACTAAATAAAGTATTCACTTACTTGATAGTA

hide sequence

RefSeq Acc Id:

XM_017594799 ⟹ XP_017450288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	12,849,136 - 12,916,405 (+)	NCBI
mRatBN7.2	7	12,198,411 - 12,265,922 (+)	NCBI
Rnor_6.0	7	15,364,082 - 15,428,674 (+)	NCBI

Sequence:

show sequence

CTTTCACTGAGAGAAAACAGAGAAATAATTCTATGTCCTGCTCTACCTTTGAGCCATTCCCAGG
CCACTTTCTTTGGCCCTGAAGTCGGTGGTAACTTTCTGATGTTTCATATAAATACCTGAAACTT
CTCAAGAAGTTTCTGTGACCACTCTGTTGCTGGCCTCTTGCTTCTAGAATTCTCCACTCTTGTT
ATTATGATGCAAACTACAGCACGAAGAATGAAGGAGGGGCTTGGGAAGAGACCCTCTCTCATCC
ACAACATAGGAGAGCACTCAGGCCTTTACTAAGGTGTCCTACCACAACCTCAGCCTGTGTTGAG
CAGAATTAGGTGGAGAGCCAGGGAGGCCCACTGAACAAGACTGAGGAAGGAGATTGGAAGAGAA
TCACCAGGAATACACCCTTTTCTTAAGAGCTGATAGGGAGTTCCATGAAACTGGGTGAATGAGA
TGAGTCAAGGGAAGAAAGGAGGCATCATAGTGTGAGAAGAGGAGCAGGAAGTCACTGGGGAGCA
GGGAAGCAGTCACAAGGCAGCTGAAAATGACTGAGAAAAAGGAAGACACACCTGAACCTATGAG
GATATGTCCTCACAGAGACTGTGATAGCATACACAGAGGCTGCCCGGGTTCACGCAGGGGTTCC
ACTGCTGAGAGAAGAAAGTGGACAGAGCTCCTATCCCTAACAGAGAAGGGATCTCCAATTGATA
GCCACTTAGTTTTTCTCCAGTGGAGTCTCTCTGGATATATAAACCACACTTAAAGGACTGTCTA
ACTTTTGAGGATGTGGCTGTGAACTTCACCTTGGAGGAGTGGGATTTGCTGGATCCTTCCCAGA
AGCAACTCTACACAGATGTCATGCAGGAAACCTTCAAAAACCTAATTGCTATAGGACAAATTGA
GGAAGGCCGGAGGAGTAAAGATGATGATGAAGAGTCTAGGAGAAGTCTGAGAAGTGGACTGGTG
GAATTGTTGTGTAAACCCAGAGAAAGTAGACAATGTGAAGAAATCTTCAGCGAGTTTCCAGATA
CTGTGGTGAATAAGAAAACCCCTCATGGAGTAAAACTGTGTGAAAGTCATTTATGTGAAGACAT
ACTTATCGGTCTCCCACCCCTGAATATGCATATTCCTGTTCAACGAGGACATAGACCATATGAA
TATGAGACATATGAAGACAGTCTCTATAAATTTAGGGAGTGTGGGAAAGCCTTCCTGTATTCTG
AATGCTATCTGAAGCATGAAAATGCTCACATCATAGAGAAACCGTATAAATGTCAACAATGTGG
GAAAGCCTTTTCTTCTTCAAGTAAGGTTCGAAGACATGAAAGAACTCACACTGGTGAGAAGCCC
TACATGTGTAACCATTGTGGGAAAGCCTTCCCTAGTCGTGGCTCCCTTCGCCGTCATGACAGGA
TTCACAGTGGAGAGAAGCCCTTTGTGTGTAAGTATTGTGGGAAAGCTTTCACCGGTCAGAGTTC
ACTTCCACGCCATGAAAGAATTCACAGTGGAGAGAAACCCTATGTCTGCAAATACTGTGGCAAA
TGTTTCATTTCTTCAAGTACCTGTCGAGTACACGAACGGACTCACACTGGAGAGAAACTCTATG
TTTGTAATCTGTGCAATAAAGCTGTCACTACTCGTACTTCCCTTCGAAATCATGAACGAATTCA
CAGTGGTGAGAAACCCTATGTTTGCGAACAGTGTGGGAAAGGTTTCATCTCCTCTGGTACCTTT
CGAATACACGAACGAATTCACACTGGGGAGAAACCCTATAGATGTAAGGAATGTGGTAAAGCCT
TCACTATACAGAGTTCTCTCCAACGCCATGAAAGGATTCACACTAGGGAAAAACCCTATGACTG
TAAGGAATGTGGGAAAGCCTTCAGTGGTTACAGCTCCCTTCGACGCCACGAAAGGATTCACAGT
GGAGAAAGACCCTATGCATGCAAGCAGTGTGGCAAAGCTTTTCCTGCCTTGGGTGATTGTCAGA
GACATGAGCAAATCCACACTGGTGAGAAGCCCTATATATGTAAGCAGTGTGGGAAAGCCTTTAC
TCGTTGTGGTTCCCTCAGAATACATGAAAAGACCCATGCTAGACAGAATTCCTAAGCATAAAAT
GTGAAAGAACTCCTTGTCGCGTGCCCTTTCTAAAAAAAAAAAAAAAAAACTGTTACAATGTTTA
GGGAAGAAAACAAGTATATCAAGTTATGAGGGCTGCCACTGGTCATACTGTTAAATTAACAAAA
AGGACAAGCTAAGAACTCACCCAATATCAAAACTTGCTCAGAAAGTTGACTGTAAGAAATAGTT
TTAAAATTCTGTACTACCTGAGGATTTTCACATAAGTTTCACTAGCTCATAAATGTACACTGTG
AAAGGTTCAATGCAAAGTAATTTATGTAGAATGCTCCAAAAATTACATAACCCGAAGGAAAACA
TCCTAAAATTATATTACACTGATTAGTTTATTACTAAAATAGATATACAAACTATTTCTAAGTA
TAACTCCTGTAAATAAATGGTGGCATGACATAATTCTGTGAAGTTTGCTTAAGCAATGGAGCAA
GAGAGTTTTTTTTTTTAACCCTGTTCATTACCATTCTGAAGATTTTGGTTGTCTGAATGGTGGA
ATGGCCTTTTGAGATGTAGTTATGGCAAATAACAACACATGAGTTGGCACTAGGTCACAGTTCC
AGGACAAGGTCCTCCAGAATGATGGGTGTGCTCTAAATTGGCATCTCACACAATACTGTCTCTC
TCATGGGCCTAGGAATCAAGTGGGGGTGGGGATCACCCCTATAACTCACTAGCAAACACTGTTT
TCGTGTTCTGTAGATATGAAGGTTCTACCACGAGGAACACCCATTCCTTTGAACTGGAAACTAA
GGCACCCACACATATCCAACCCCATACCAATTTACTCTGCGTTCCTTGTGCCCTTGAGTTAACT
AAAAATTGTTACTGTCAACTGGAATTACAGATCCACATGACCAGTGGGGAATGAAAACACCATT
TAGCAATGGAGATGTTCTGATTATTTTTTGTCTACTTTACACAATCTAGAGTTATCTGGAAAGA
GAAATCACCATTAGATTGACCTGTAGACAATGATGTATGGGACAGGGCTACTGTGGGTAGTGCC
ACTCCTGGGCAGGTGGCCCTGTGTTGTATAAGAAAGCAGGCTAAGTGGCCATGAGGAGCAAGCC
AAGACTCAAGACTTCCTCCATGGTCTCTGCTTCAGATCCTACTTCCAAGTTCCAAGTTCCTGCC
TTAAGATTCTACCCTGGTTTCTCTTGGGGCTGGAATATAAACGATAATGAAAACATCCTTTTTT
CCTCAAATCAATTTGGTCAGTGTTTTAGCAACAGCAACAATAACTCAAACTAGGACACAAGGAA
AGGAAGACTATTCCTGGATTTCCTTGTCATTGCTGTGTCTGGTGATTAAAACCCATGGGGAGCT
ACAACTCGGTCCAAACAGGGTAAGAAAGAATGGAAGTGTGAACTACTTGTAAAGAGCTAGTTGA
TTTGGGGATATGATGTTTTTATTTACTTACTTCCAAGTAAGGTTTTTTATACTAAAAATTGATA
TTAAATTAAAATTTTAAAAATCAAGATGCTTAGTGTTTGCTAAAGAGGAAGAAATACAAAATGA
TATGAGAAGGTACTTATAAATATGGTATGCCTACAGTTGTAGAAGTGAGGATTCTAATTATATT
GGGTCTTATTTTGTTAAGAGTATGTATGTTGGACTGGGTGTGGTGGCATATTCCTTTAATCCCA
GCACTCAGGAGACAAAGGCAAATGACTTAATTCAAGACCAACTTGGTTGACATAGTGAATTCCA
GAACAGCCAGGGATATAGAGGGAGACCTTGACTCAAAAACAACGGAAGAAAAGAATATGGGTTT
ACTTTTATACTTGATAGTGTTGATTGCCAATGTGACAAATCTAAAATCACCTGTGAGACGGGCC
CCTGAGAGTGCCTGTGGTCAGTTATCTTGATTGCATAAATGAGGTGGGCTCTCCTCCTGTTGGA
AGTTCCATTTCCTGACTGGAATCCACGAGTGTATACAAGTGCAGAGCTAACTATCTGAGCGCAA
GCATACATGCATTGATTTACTGCTCTCTGCTTTTGACTGTGGATGTAATGTGAGAGCTGCTCAA
GTTACTGCCATATTGACTTCCCCACAGTGATGGAATTATGAGCCAAATAAACCCCCTTCCCTTT
ATGTTGCTTTTACCTGGATATTTTGTCACTATGACAGGAAGTGAGGCTAAGACATATACACACA
CATAGTAAGCAGATATTCATGTTTTCTTTTGTCTCATCCTTTACCATGTAATCTGTTTATTGAT
TTAATAAGACGGTATTGCTATGTATTTTCGTATTTAGTTATGGTATAATAAGTGAATAAGCTTT
CCTCAGGGGACTTTGACACCCATTCTGAGGAAGCACCACGTTTTCATTTGTACATGAAAGTCAC
ATTAGGTGAGATAACTTTGTTATTGTCTTTATTTAAAATTGTGTATAACATAGGTTATTGGATG
TCAAAGGAGGGACTAGCGGTGGTTGTTCTTGGTTGTTCTCTTGACTGGTGAAACGCACCTGGAT
ATTGGTGAGGAAATCTCCACAGAAGAAGTGATATGTAGGACAGTGACTTGGAGGGGAAAACTCA
TATTCAATGTGGGCAGCGATTCCTAACAACATCCTGGATGAAGTCTCAGGAAAAAACAGCAGGC
ACATACCTGCCTTCCCTTTGGTTTGAGTGCATCTGTTGATGCTACTGTGATCTCCTGTCTTCTT
CCTCTTGACTGGGACTTAGTTCTAGTGACGTTCGAGGAGCCTCCAGTATTTCGGCCTCAGATCA
GGGCCCCTGAGGCATTTAGCTTTTAGAGTGGGCAGCTAGCAAATTCTCTGCTCTCTGCTACAAG
CAGCCCCTATCATGTATGACAATCTAGTAAATACCTTCTTTAATAAT

hide sequence

RefSeq Acc Id:

XM_039078971 ⟹ XP_038934899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	12,849,136 - 12,916,405 (+)	NCBI
mRatBN7.2	7	12,198,411 - 12,265,922 (+)	NCBI

RefSeq Acc Id:

XM_039078972 ⟹ XP_038934900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	12,849,136 - 12,916,405 (+)	NCBI
mRatBN7.2	7	12,198,411 - 12,265,922 (+)	NCBI

RefSeq Acc Id:

XM_063263400 ⟹ XP_063119470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	12,849,136 - 12,916,405 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128033	(Get FASTA)	NCBI Sequence Viewer
	XP_017450288	(Get FASTA)	NCBI Sequence Viewer
	XP_038934899	(Get FASTA)	NCBI Sequence Viewer
	XP_038934900	(Get FASTA)	NCBI Sequence Viewer
	XP_063119470	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89502	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000105383
	ENSRNOP00000105383.1
	ENSRNOP00000108913
	ENSRNOP00000108913.1

RefSeq Acc Id:

NP_001128033 ⟸ NM_001134561

- UniProtKB:

A0A8I6AGR4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDCLTFEDVAVNFTLEEWDLLDPSQKQLYTDVMQETFKNLIAIGQIEEGRRSKDDDEESRRSLR
SGLVELLCKPRESRQCEEIFSEFPDTVVNKKTPHGVKLCESHLCEDILIGLPPLNMHIPVQRGH
RPYEYETYEDSLYKFRECGKAFLYSECYLKHENAHIIEKPYKCQQCGKAFSSSSKVRRHERTHT
GEKPYMCNHCGKAFPSRGSLRRHDRIHSGEKPFVCKYCGKAFTGQSSLPRHERIHSGEKPYVCK
YCGKCFISSSTCRVHERTHTGEKLYVCNLCNKAVTTRTSLRNHERIHSGEKPYVCEQCGKGFIS
SGTFRIHERIHTGEKPYRCKECGKAFTIQSSLQRHERIHTREKPYDCKECGKAFSGYSSLRRHE
RIHSGERPYACKQCGKAFPALGDCQRHEQIHTGEKPYICKQCGKAFTRCGSLRIHEKTHARQNS

hide sequence

RefSeq Acc Id:	XP_017450288 ⟸ XM_017594799
- Peptide Label:	isoform X1
- UniProtKB:	A6K982 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQETFKNLIAIGQIEEGRRSKDDDEESRRSLRSGLVELLCKPRESRQCEEIFSEFPDTVVNKKT PHGVKLCESHLCEDILIGLPPLNMHIPVQRGHRPYEYETYEDSLYKFRECGKAFLYSECYLKHE NAHIIEKPYKCQQCGKAFSSSSKVRRHERTHTGEKPYMCNHCGKAFPSRGSLRRHDRIHSGEKP FVCKYCGKAFTGQSSLPRHERIHSGEKPYVCKYCGKCFISSSTCRVHERTHTGEKLYVCNLCNK AVTTRTSLRNHERIHSGEKPYVCEQCGKGFISSGTFRIHERIHTGEKPYRCKECGKAFTIQSSL QRHERIHTREKPYDCKECGKAFSGYSSLRRHERIHSGERPYACKQCGKAFPALGDCQRHEQIHT GEKPYICKQCGKAFTRCGSLRIHEKTHARQNS hide sequence

Ensembl Acc Id:

ENSRNOP00000061844 ⟸ ENSRNOT00000066520

RefSeq Acc Id:	XP_038934900 ⟸ XM_039078972
- Peptide Label:	isoform X1
- UniProtKB:	A6K982 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934899 ⟸ XM_039078971
- Peptide Label:	isoform X1
- UniProtKB:	A6K982 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092542 ⟸ ENSRNOT00000103954

RefSeq Acc Id:	XP_063119470 ⟸ XM_063263400
- Peptide Label:	isoform X1
- UniProtKB:	A6K982 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108913 ⟸ ENSRNOT00000150924

Ensembl Acc Id:

ENSRNOP00000105383 ⟸ ENSRNOT00000171772

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M4J4-F1-model_v2	AlphaFold	F1M4J4	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308729	AgrOrtholog
BioCyc Gene	G2FUF-34788	BioCyc
Ensembl Genes	ENSRNOG00000030273	Ensembl
	ENSRNOG00000062776	Ensembl
	ENSRNOG00000085163	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000150924	ENTREZGENE
	ENSRNOT00000150924.1	UniProtKB/TrEMBL
	ENSRNOT00000171772	ENTREZGENE
	ENSRNOT00000171772.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	GLI_C2H2-zinc-finger	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	314584	ENTREZGENE
PANTHER	PAIR-RULE PROTEIN ODD-PAIRED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZIC AND GLI	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp563	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000030273	RatGTEx
	ENSRNOG00000062776	RatGTEx
	ENSRNOG00000085163	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6AGR4	ENTREZGENE
	A0ABK0LSD1_RAT	UniProtKB/TrEMBL
	A0ABK0LTF2_RAT	UniProtKB/TrEMBL
	A6K982	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-01-23	Zfp563	zinc finger protein 563	RGD1308729	similar to ZFP-like protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1308729	similar to ZFP-like protein	RGD1308729_predicted	similar to ZFP-like protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308729_predicted	similar to ZFP-like protein (predicted)	LOC314584_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314584_predicted	similar to ZFP-like protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message