Trim36 (tripartite motif-containing 36) - Rat Genome Database

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Gene: Trim36 (tripartite motif-containing 36) Rattus norvegicus
Analyze
Symbol: Trim36
Name: tripartite motif-containing 36
RGD ID: 1308714
Description: Predicted to enable alpha-tubulin binding activity and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including acrosome reaction; regulation of microtubule cytoskeleton organization; and spindle organization. Predicted to be located in cytoplasm. Predicted to be active in acrosomal vesicle. Human ortholog(s) of this gene implicated in anencephaly. Orthologous to human TRIM36 (tripartite motif containing 36); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase TRIM36; LOC291597; tripartite motif protein 36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,047,657 - 41,099,497 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1841,047,657 - 41,104,704 (-)EnsemblGRCr8
mRatBN7.21838,859,604 - 38,912,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1838,861,018 - 38,912,859 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1840,894,270 - 40,946,110 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01841,596,491 - 41,648,337 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,389,608 - 39,441,448 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,081,028 - 40,134,673 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,082,442 - 40,134,504 (-)Ensemblrn6Rnor6.0
Rnor_5.01839,735,799 - 39,789,150 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41840,329,191 - 40,356,113 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1837,123,216 - 37,174,989 (-)NCBICelera
RGSC_v3.11840,365,825 - 40,393,763 (-)NCBI
Cytogenetic Map18q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
acrosomal vesicle  (IBA,IEA,ISO)
cytoplasm  (IEA,ISO)
cytoplasmic vesicle  (IEA)
cytoskeleton  (IEA)
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12917430   PMID:19028597   PMID:19232519   PMID:23376485   PMID:28087737  


Genomics

Comparative Map Data
Trim36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,047,657 - 41,099,497 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1841,047,657 - 41,104,704 (-)EnsemblGRCr8
mRatBN7.21838,859,604 - 38,912,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1838,861,018 - 38,912,859 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1840,894,270 - 40,946,110 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01841,596,491 - 41,648,337 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,389,608 - 39,441,448 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,081,028 - 40,134,673 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,082,442 - 40,134,504 (-)Ensemblrn6Rnor6.0
Rnor_5.01839,735,799 - 39,789,150 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41840,329,191 - 40,356,113 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1837,123,216 - 37,174,989 (-)NCBICelera
RGSC_v3.11840,365,825 - 40,393,763 (-)NCBI
Cytogenetic Map18q11NCBI
TRIM36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385115,124,772 - 115,180,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5115,124,762 - 115,180,546 (-)Ensemblhg38GRCh38
GRCh375114,460,469 - 114,515,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365114,488,358 - 114,544,142 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345114,488,359 - 114,543,755NCBI
Celera5110,407,870 - 110,463,650 (-)NCBICelera
Cytogenetic Map5q22.3NCBI
HuRef5109,642,630 - 109,698,437 (-)NCBIHuRef
CHM1_15113,893,098 - 113,948,926 (-)NCBICHM1_1
T2T-CHM13v2.05115,637,975 - 115,693,508 (-)NCBIT2T-CHM13v2.0
Trim36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391846,298,367 - 46,345,674 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1846,298,367 - 46,345,674 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381846,165,300 - 46,212,607 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1846,165,300 - 46,212,607 (-)Ensemblmm10GRCm38
MGSCv371846,324,954 - 46,372,261 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361846,291,176 - 46,337,856 (-)NCBIMGSCv36mm8
Celera1847,525,190 - 47,572,586 (-)NCBICelera
Cytogenetic Map18CNCBI
cM Map1824.41NCBI
Trim36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540834,909,194 - 34,939,636 (-)Ensembl
ChiLan1.0NW_00495540834,909,194 - 34,939,635 (-)NCBIChiLan1.0ChiLan1.0
TRIM36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24110,372,912 - 110,455,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15108,526,573 - 108,582,480 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05110,481,462 - 110,540,949 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15116,279,568 - 116,335,848 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5116,279,587 - 116,335,848 (-)EnsemblpanPan2panpan1.1
TRIM36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,881,067 - 4,927,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,880,404 - 5,020,473 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha115,031,934 - 5,078,326 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0114,874,740 - 4,919,566 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,872,368 - 4,919,361 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,872,819 - 4,875,220 (-)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.1114,828,909 - 4,864,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,899,310 - 4,943,885 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0115,152,901 - 5,197,615 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trim36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213127,615,376 - 127,661,122 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936742316,160 - 361,885 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936742317,095 - 352,509 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2119,306,665 - 119,352,465 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12119,304,476 - 119,352,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22124,121,857 - 124,154,435 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103244356
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12318,371,147 - 18,427,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2318,369,648 - 18,415,235 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603459,984,129 - 60,039,909 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247336,826,652 - 6,864,768 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trim36
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11540,870,552 - 40,912,615 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trim36
327 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:50
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000022294
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 79 59 6 341 179 11 143 79 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_199356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_199357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022294   ⟹   ENSRNOP00000022294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,047,657 - 41,099,497 (-)Ensembl
mRatBN7.2 Ensembl1838,861,018 - 38,912,859 (-)Ensembl
Rnor_6.0 Ensembl1840,082,442 - 40,134,504 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080812   ⟹   ENSRNOP00000069698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,047,657 - 41,088,552 (-)Ensembl
mRatBN7.2 Ensembl1838,861,018 - 38,901,906 (-)Ensembl
Rnor_6.0 Ensembl1840,082,717 - 40,123,420 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102874   ⟹   ENSRNOP00000078293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,047,657 - 41,095,928 (-)Ensembl
mRatBN7.2 Ensembl1838,861,018 - 38,898,442 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155574   ⟹   ENSRNOP00000110746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,047,657 - 41,088,448 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157431   ⟹   ENSRNOP00000108347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,047,657 - 41,104,704 (-)Ensembl
RefSeq Acc Id: NM_001106147   ⟹   NP_001099617
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,657 - 41,099,497 (-)NCBI
mRatBN7.21838,861,018 - 38,912,859 (-)NCBI
Rnor_6.01840,082,442 - 40,134,504 (-)NCBI
Rnor_5.01839,735,799 - 39,789,150 (-)NCBI
RGSC_v3.41840,329,191 - 40,356,113 (-)RGD
Celera1837,123,216 - 37,174,989 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254686   ⟹   XP_006254748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,953 - 41,088,566 (-)NCBI
mRatBN7.21838,859,604 - 38,901,915 (-)NCBI
Rnor_6.01840,081,028 - 40,123,556 (-)NCBI
Rnor_5.01839,735,799 - 39,789,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096700   ⟹   XP_038952628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,953 - 41,088,559 (-)NCBI
mRatBN7.21838,861,640 - 38,901,916 (-)NCBI
RefSeq Acc Id: XM_039096701   ⟹   XP_038952629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,049,969 - 41,088,561 (-)NCBI
mRatBN7.21838,863,330 - 38,901,916 (-)NCBI
RefSeq Acc Id: XM_039096702   ⟹   XP_038952630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,953 - 41,067,255 (-)NCBI
mRatBN7.21838,859,604 - 38,880,605 (-)NCBI
RefSeq Acc Id: XM_039096703   ⟹   XP_038952631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,953 - 41,067,385 (-)NCBI
mRatBN7.21838,859,604 - 38,886,113 (-)NCBI
RefSeq Acc Id: XM_063277213   ⟹   XP_063133283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,047,953 - 41,084,171 (-)NCBI
RefSeq Acc Id: NP_001099617   ⟸   NM_001106147
- UniProtKB: F1LY63 (UniProtKB/TrEMBL),   A6IWV0 (UniProtKB/TrEMBL),   A0A8I5ZKQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254748   ⟸   XM_006254686
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000069698   ⟸   ENSRNOT00000080812
Ensembl Acc Id: ENSRNOP00000022294   ⟸   ENSRNOT00000022294
RefSeq Acc Id: XP_038952631   ⟸   XM_039096703
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952630   ⟸   XM_039096702
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952628   ⟸   XM_039096700
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952629   ⟸   XM_039096701
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000078293   ⟸   ENSRNOT00000102874
RefSeq Acc Id: XP_063133283   ⟸   XM_063277213
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000108347   ⟸   ENSRNOT00000157431
Ensembl Acc Id: ENSRNOP00000110746   ⟸   ENSRNOT00000155574
Protein Domains
B box-type   B30.2/SPRY   COS   Fibronectin type-III   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LY63-F1-model_v2 AlphaFold F1LY63 1-729 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308714 AgrOrtholog
BioCyc Gene G2FUF-7639 BioCyc
Ensembl Genes ENSRNOG00000016612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022294 ENTREZGENE
  ENSRNOT00000022294.9 UniProtKB/TrEMBL
  ENSRNOT00000080812.3 UniProtKB/TrEMBL
  ENSRNOT00000102874.2 UniProtKB/TrEMBL
  ENSRNOT00000155574 ENTREZGENE
  ENSRNOT00000155574.1 UniProtKB/TrEMBL
  ENSRNOT00000157431.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  4.10.830.40 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  COS_domain UniProtKB/TrEMBL
  E3_ligase_FN3/SPRY UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  FN_III UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Midline-1_COS UniProtKB/TrEMBL
  SPRY/PRY_TRIM36 UniProtKB/TrEMBL
  Trim36 UniProtKB/TrEMBL
  TRIM36_Bbox1_Zfn UniProtKB/TrEMBL
  TRIM36_Bbox2_Zfn UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:291597 UniProtKB/TrEMBL
NCBI Gene 291597 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED UniProtKB/TrEMBL
  PTHR24099:SF18 UniProtKB/TrEMBL
Pfam COS UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PhenoGen Trim36 PhenoGen
PROSITE B302_SPRY UniProtKB/TrEMBL
  COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016612 RatGTEx
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  ConA_like_lec_gl UniProtKB/TrEMBL
  FN_III-like UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A0G2JW11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LQQ2_RAT UniProtKB/TrEMBL
  A0ABK0LYL2_RAT UniProtKB/TrEMBL
  A6IWV0 ENTREZGENE, UniProtKB/TrEMBL
  F1LY63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Trim36  tripartite motif-containing 36  Trim36_predicted  tripartite motif protein 36 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Trim36_predicted  tripartite motif protein 36 (predicted)    tripartite motif-containing 36 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Trim36_predicted  tripartite motif-containing 36 (predicted)      Symbol and Name status set to approved 70820 APPROVED