Advanced Search (OLGA)

Gene: Crim1 (cysteine rich transmembrane BMP regulator 1) Rattus norvegicus

Analyze

Symbol:

Crim1

Name:

cysteine rich transmembrane BMP regulator 1

RGD ID:

1308710

Description:

Predicted to enable PDZ domain binding activity. Predicted to act upstream of or within negative regulation of BMP signaling pathway. Predicted to be located in extracellular region and membrane. Orthologous to human CRIM1 (cysteine rich transmembrane BMP regulator 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cysteine rich transmembrane BMP regulator 1 (chordin like); cysteine-rich motor neuron 1; LOC298744

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	22,447,983 - 22,622,459 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	22,449,948 - 22,622,416 (-)	Ensembl				GRCr8
mRatBN7.2	6	16,695,864 - 16,870,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	16,697,829 - 16,870,259 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	17,006,372 - 17,178,832 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	17,328,581 - 17,501,056 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	16,812,112 - 16,987,170 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	788,490 - 962,663 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	788,548 - 960,703 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	780,568 - 954,493 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	962,024 - 1,141,314 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	16,341,369 - 16,513,685 (-)	NCBI		Celera
RGSC_v3.1	6	1,051,003 - 1,141,914 (+)	NCBI
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

beauvericin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

carbamazepine (ISO)

chloroprene (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDT (EXP)

diarsenic trioxide (ISO)

diazinon (ISO)

dibutyl phthalate (EXP,ISO)

dichloroacetic acid (ISO)

diethylstilbestrol (ISO)

disulfiram (ISO)

diuron (EXP,ISO)

dorsomorphin (ISO)

endosulfan (EXP)

enniatin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gamma-hexachlorocyclohexane (ISO)

gentamycin (EXP)

graphene oxide (ISO)

inulin (ISO)

irinotecan (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel sulfate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

prednisolone (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

succimer (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of BMP signaling pathway (ISO)

negative regulation of osteoblast differentiation (ISO)

Cellular Component

extracellular region (IEA)

membrane (IEA)

Molecular Function

enzyme inhibitor activity (IEA)

PDZ domain binding (IEA,ISO)

serine-type endopeptidase inhibitor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23209302	PMID:23376485

Genomics

Comparative Map Data

Crim1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	22,447,983 - 22,622,459 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	22,449,948 - 22,622,416 (-)	Ensembl				GRCr8
mRatBN7.2	6	16,695,864 - 16,870,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	16,697,829 - 16,870,259 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	17,006,372 - 17,178,832 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	17,328,581 - 17,501,056 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	16,812,112 - 16,987,170 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	788,490 - 962,663 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	788,548 - 960,703 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	780,568 - 954,493 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	962,024 - 1,141,314 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	16,341,369 - 16,513,685 (-)	NCBI		Celera
RGSC_v3.1	6	1,051,003 - 1,141,914 (+)	NCBI
Cytogenetic Map	6	q12	NCBI

CRIM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	36,355,778 - 36,551,135 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	36,355,731 - 36,551,135 (+)	Ensembl			hg38	GRCh38
GRCh37	2	36,582,921 - 36,778,278 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	36,436,901 - 36,631,782 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	36,495,047 - 36,689,928	NCBI
Celera	2	36,424,733 - 36,619,370 (+)	NCBI		Celera
Cytogenetic Map	2	p22.2	NCBI
HuRef	2	36,324,018 - 36,518,565 (+)	NCBI		HuRef
CHM1_1	2	36,512,729 - 36,707,637 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	36,362,433 - 36,557,798 (+)	NCBI		T2T-CHM13v2.0

Crim1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	78,507,602 - 78,684,021 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	78,507,677 - 78,684,021 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	78,200,233 - 78,376,592 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	78,200,248 - 78,376,592 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	78,599,588 - 78,775,932 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	78,102,126 - 78,279,372 (+)	NCBI		MGSCv36	mm8
Celera	17	82,502,178 - 82,678,529 (+)	NCBI		Celera
Cytogenetic Map	17	E2- E3	NCBI
cM Map	17	48.09	NCBI

Crim1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	4,274,611 - 4,420,537 (+)	Ensembl
ChiLan1.0	NW_004955441	4,275,411 - 4,420,537 (+)	NCBI	ChiLan1.0	ChiLan1.0

CRIM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	89,927,033 - 90,122,274 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	89,931,009 - 90,126,247 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	36,384,964 - 36,580,214 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	37,148,551 - 37,342,933 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	37,147,108 - 37,340,537 (+)	Ensembl			panPan2	panpan1.1

CRIM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	28,857,702 - 29,042,399 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	28,857,696 - 29,040,002 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	28,671,528 - 28,856,142 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	29,507,397 - 29,692,213 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	29,506,861 - 29,692,195 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	28,729,097 - 28,913,813 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	28,797,081 - 28,981,634 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	29,016,015 - 29,200,891 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Crim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	42,958,263 - 43,137,956 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936663	1,623,355 - 1,803,448 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936663	1,623,655 - 1,803,442 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRIM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	103,612,659 - 103,815,556 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	103,612,231 - 103,815,493 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	110,257,604 - 110,477,270 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRIM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	70,868,523 - 71,067,086 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	70,870,839 - 71,067,215 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	40,894,800 - 41,091,278 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crim1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	18,035,725 - 18,216,464 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624738	18,036,199 - 18,216,086 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Crim1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	14,843,524 - 15,021,163 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Crim1
891 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	245
Count of miRNA genes:	178
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000005983
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	22288257	27729050	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	1	25740059	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	22288257	32981219	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	22288257	67288257	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat

Markers in Region

RH134028

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	22,448,047 - 22,448,266 (+)	Marker Load Pipeline
mRatBN7.2	6	16,695,928 - 16,696,147 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	962,385 - 962,603	NCBI	Rnor6.0
Rnor_5.0	6	954,210 - 954,428	UniSTS	Rnor5.0
RGSC_v3.4	6	1,142,996 - 1,143,214	UniSTS	RGSC3.4
Celera	6	16,339,469 - 16,339,687	UniSTS
RH 3.4 Map	6	25.7	UniSTS
Cytogenetic Map	6	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001169103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ217152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005983 ⟹ ENSRNOP00000005983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	22,449,948 - 22,622,416 (-)	Ensembl
mRatBN7.2 Ensembl	6	16,697,829 - 16,870,259 (-)	Ensembl
Rnor_6.0 Ensembl	6	788,548 - 960,703 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094931 ⟹ ENSRNOP00000088000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	22,449,948 - 22,622,416 (-)	Ensembl
mRatBN7.2 Ensembl	6	16,697,829 - 16,870,259 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124837 ⟹ ENSRNOP00000108338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	22,449,948 - 22,622,416 (-)	Ensembl

RefSeq Acc Id:

NM_001169103 ⟹ NP_001162574

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,449,948 - 22,622,416 (-)	NCBI
mRatBN7.2	6	16,697,829 - 16,870,259 (-)	NCBI
Rnor_6.0	6	788,548 - 960,703 (+)	NCBI
Rnor_5.0	6	780,568 - 954,493 (+)	NCBI
RGSC_v3.4	6	962,024 - 1,141,314 (+)	RGD
Celera	6	16,341,369 - 16,513,685 (-)	RGD

Sequence:

show sequence

GGGAGAGAGCCGAGCCGGGCGCAAGGAACGGACGCCACGGACCTTCTGCTGAGCCACCGCGCCC
ACTCGGCGGCTCGGGAGGCGGGGACCGGCCCGGAGGCTGCGCTGCCGTCGTCTTTCCCCGGCGA
TCAGGAGCAGCGCGGAGGACCAGAAGGAGCCACCAGCCCTGCTTCGGAGCGGTGCGCAGCCACC
GCCGCCGCCAGAAGTTTGGGTTGAACCGGAGCTGCCGCGAGGAAACTTTTTTTCCTCTTTTTCC
CCTCCCGCCCGGGAGGAAAAGGAGGAGGAGGGGAAGCCACCCGCCACTGCTGCCGCTGGCGCCA
ACGCTCGTGGGCTCCGGGTCGGCGCGGCCCGCAGGGGCGGCGGGGGCCTCGCCCCGAGAGGGGA
GGAGCGCCCCGGGGGCCCCTAGTGGGGCACGAGGACCGCGGGCTGCGGGTGCGGCGGCGGCGCG
TGTGCCCCGCGCAGGGGAGGGCGCCCGCCCCGCTCCCGGCCCGGCTGCGAGGAGGAGGCGGCGG
CACAGGAGGATGTACTTGGTGGCGGGGGGCAGGGGGCTGGCCGGCTGCGGGCACCTCTCGGTCT
CGCTGCTGGGGCTGCTGCTGCTGCTGGCGCGCTCAGGCACCCGGGCGCTGGTCTGCCTGCCCTG
TGACGAGTCCAAGTGCGAGGAGCCTCGGAGCTGCCCGGGAAGCATCGTGCAGGGCGTCTGCGGC
TGCTGCTACATGTGCGCCCGCCAGAGGAACGAGAGCTGCGGTGGAGCCTATGGGCTCCATGGAG
CCTGCGACCGGGGGCTGCGCTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCATCACCGAGTA
TGAAGTGGGCGTCTGCGAAGACGAGGACTGGGACGACGACCAGCTGCTCGGTTTTGAGCCCTGC
AATGAGAACCTCATCTCGGGCTGCAATATCATCAACGGGAGATGCGAATGCAGTACCATCCGAA
CCTGCAACAACCCCTTTGAGTTCCCAAGGAAGGACATGTGCCTTTCGGCCTTAAAGAGGATCGA
AGAAGAGAAGCCAGATTGCACCAAGGCCCGCTGTGAAGTGCAGTTCTCTCCACGTTGCCCTGAA
GATTCCATTCTGATTGAGGGCTATGCTCCCCCCGGGGAGTGTTGTCCTTTACCCAGCCGCTGCG
TGTGTGACCCTGCGGGCTGTCTGCGCAAAGTCTGCCAGCCGGGATACCTGAACATTCTAGTGTC
CAAAGCCTCAGGGAAGCCGGGAGAGTGCTGTGACCTCTATGAGTGTAAACCAGTTTTCAGCGTG
GACTGCAGCACCGTGGAGTGCCCCCCTGTCCAGCAGGCCGTGTGCCCCCTGGACAGCTACGAAA
CGCAAGTGCGGCTCACAGCGGATGGCTGCTGTACCCTGCCAGCAAGATGCGAGTGTCTCTCTGG
CTTATGTGCTTTTCCCGTTTGTGAGGTGGGATCTACTCCCCGAATAGTCTCTCGTGGAGATGGG
ACACCTGGAAAGTGCTGTGATGTCTTTGAATGTGTTAATGAAACAAAGCCAGCCTGCGTGTTCA
ACAGTGTGGAGTATTACGATGGAGACATGTTTCGAATGGACAACTGTCGGTTCTGTCGGTGCCA
AGGGGGCGTCTCCATCTGCTTCACCGCCCAGTGTGGGGAACTGAACTGCGAAAGATACTATGTG
CCTGAGGGGGAGTGTTGCCCCGTGTGTGAAGATCCCATCTATCCTTTCAACAACCCCGCCGGCT
GCTACGCCAACGGCCAGATCCGCGCCCACGGGGACCGGTGGCGGGAAGACGACTGCACCTTCTG
CCAGTGTATCAATGGAGAACCCCACTGCGTGGCCACCGCCTGCGGGCAGAGCTGCATGCACCCC
GTGAAAGTGCCTGGGGAGTGTTGCCCCGTGTGTGAAGAACCAACCTACATCACAATTGATCCAC
CTGCGTGCGGGGAGTTGTCAAACTGTACTCTGAAAGAGAAGGACTGCGTTTACGGCTTCAAACT
GGATCACAATGGCTGTCGAACCTGTCAGTGCAAAAACAGGGAGGAACGATGCTTAGCCCTTAAA
AGGGCCTGCACTTTGGACTGTCCCTTCGGCTTCCTCACCGATGTCCACAACTGTGAGCTCTGTC
AGTGCCGCCCACGGCCCAAGAAATGCAGACCAACAATATGCGACAAGTTTTGTCCTCTTGGATT
CCTGAGGAACAAGCACGGCTGTGACATCTGTCGCTGTAAGAAGTGTCCAGAGCTTCCATGCAGC
AAGGTCTGCCCCTTGGGCTTCCAGGAGGACAGTCACGGCTGTCTCATCTGCAAGTGCAGAGAGG
TCCCTACTTCAGCCGGGCCACCTGTCCTGTCAGGCACATGTCTGTCCATGGATGGTCATCACCA
TAAAAACGAGGAGAGCTGGCATGATGGCTGCCGGGAATGCTACTGTCACAATGGGAAGGAAATG
TGTGCCCTCATCACCTGCCCAGTGCCTGCCTGCGGCAACCCCACCATCCGGCCCGGACAGTGCT
GCCCATCCTGCGCAGATGACTTCGTGGTGCAGAAGCCCGAGCTCAGCACGCCTTCCATTTGCCA
CGCCCCTGGAGGAGAGTACTTTGTGGAAGGGGAAACGTGGAACATTGACTCCTGTACGCAGTGC
ACCTGTCACAGTGGCCGAGTGCTGTGTGAGACGGAGGTGTGCCCACCACTGCTCTGCCAGAACC
CCTCACGCACCCAGGACTCCTGCTGCCCACAGTGTACAGAGGACCCTCTTCAGCCTTCCACATC
CCATAATGAGAGCGTGCCTAGCTACTGCAGGAATGATGAAGGGGACATCTTCCTGGCGGCCGAG
TCCTGGAAGCCTGACGTCTGCACCAGCTGCGTGTGCATGGATAGCTCCATTAGCTGCTACTCCG
AGTCTTGCCCTTCGGTGGCCTGCGAACGGCCCGTTTTGAGGAAAGGCCAGTGTTGCCCCTACTG
TCTAGAAGACACGATTCCAAAGAAAGTGGTGTGTCACTTCAGTGGGAAGACCTACGCTGACGAG
GAGCGGTGGGACATCGACAGCTGCACACATTGCTACTGCCTGCAAGGCCAGACCCTCTGCTCGA
CTGTCAGCTGCCCACCATTACCCTGTGCCGAGCCCATCAAGGTGGAAGGGAGTTGCTGCCCGAT
GTGCCCAGAAATGTATGTGCCAGAGCCAACCAATGTGCCCATTGAGAAGAAGAATCATCGCGGC
GAGATTGACCTGGAGGTTCCCATGTGGCCCACCCCAAGTGAAAATGACATCATCCACCTCCCTA
GAGATATGGGTCACCTCCAGGTAGATTACAGAGACAATAACAGGCTGCATCCAAGTGAAGACTC
ATCATTGGACTCCATTGTCCCCGTTGTGGTTCCCATAATCATATGCCTGTCCATCATAATAGCA
TTCCTGCTCATCAACCAGAAGAAACAGTGGATACCGCTGCTGTGCTGGTACCGGACACCAACCA
AGCCTTCTTCCTTGAATAATCAGCTGGTATCGGTGGACTGCAAGAAAGGCACTCGGGTCCAGGT
GGACGGTTCCCAGAGAATGCTAAGAATCGCTGAACCAGATGCACGATTCAGTGGCTTCTACAGC
ATGCAGAAACAGAACCATCTACAGGCAGACAATTTCTACCAAACGGTGTGAACGCAGGCAGCAG
TGCGGATGAGGTTTCGAAAGACGGAGAACAACGACAAAAAAACAAACAAACAAACAAACAAACA
AAAAAACAAAAAAATATCTGCTCTTTAAAGTAAACTAGGATTTGCGCACTTGCTTAGTGTATTG
TATTGGATTGTGACTTGGGGTCCAGCACTAAGGGCTGGACTGGGATGGGCTCTGTCTACAGCAC
TGTGCAGAACAAGCATTCCCACTTGGCCTCAAGATAACTGACCACATGTTTTCATAGAACCAAA
GTTTTAAAACTTGCTAAAGTATATTTGCTTGTAAGATAGCTGTAAAGACATTCGGGGGTGGGGA
CAGAGAGTTTGGTGGGGGAAATGGGTCGGGAGGGTAGTGTTGGGAAGAAAAACAATCGGTCAGC
TTGGCTTGGGGAGAAAGCCAGTAAAAATAAAGGCAATTCGTGGC

hide sequence

RefSeq Acc Id:

XM_006239623 ⟹ XP_006239685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,447,983 - 22,622,459 (-)	NCBI
mRatBN7.2	6	16,695,864 - 16,870,264 (-)	NCBI
Rnor_6.0	6	788,490 - 962,663 (+)	NCBI
Rnor_5.0	6	780,568 - 954,493 (+)	NCBI

Sequence:

show sequence

GGGCGCAGCCGGAGCAGCGGAGGCTCCAGCCATAAACAAGCGCCCGGAGGAGCGGCGCGGGAGA
GAGCCGAGCCGGGCGCAAGGAACGGACGCCACGGACCTTCTGCTGAGCCACCGCGCCCACTCGG
CGGCTCGGGAGGCGGGGACCGGCCCGGAGGCTGCGCTGCCGTCGTCTTTCCCCGGCGATCAGGA
GCAGCGCGGAGGACCAGAAGGAGCCACCAGCCCTGCTTCGGAGCGGTGCGCAGCCACCGCCGCC
GCCAGAAGTTTGGGTTGAACCGGAGCTGCCGCGAGGAAACTTTTTTTCCTCTTTTTCCCCTCCC
GCCCGGGAGGAAAAGGAGGAGGAGGGGAAGCCACCCGCCACTGCTGCCGCTGGCGCCAACGCTC
GTGGGCTCCGGGTCGGCGCGGCCCGCAGGGGCGGCGGGGGCCTCGCCCCGAGAGGGGAGGAGCG
CCCCGGGGGCCCCTAGTGGGGCACGAGGACCGCGGGCTGCGGGTGCGGCGGCGGCGCGTGTGCC
CCGCGCAGGGGAGGGCGCCCGCCCCGCTCCCGGCCCGGCTGCGAGGAGGAGGCGGCGGCACAGG
AGGATGTACTTGGTGGCGGGGGGCAGGGGGCTGGCCGGCTGCGGGCACCTCTCGGTCTCGCTGC
TGGGGCTGCTGCTGCTGCTGGCGCGCTCAGGCACCCGGGCGCTGGTCTGCCTGCCCTGTGACGA
GTCCAAGTGCGAGGAGCCTCGGAGCTGCCCGGGAAGCATCGTGCAGGGCGTCTGCGGCTGCTGC
TACATGTGCGCCCGCCAGAGGAACGAGAGCTGCGGTGGAGCCTATGGGCTCCATGGAGCCTGCG
ACCGGGGGCTGCGCTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCATCACCGAGTATGAAGT
GGGCGTCTGCGAAGACGAGGACTGGGACGACGACCAGCTGCTCGGTTTTGAGCCCTGCAATGAG
AACCTCATCTCGGGCTGCAATATCATCAACGGGAGATGCGAATGCAGTACCATCCGAACCTGCA
ACAACCCCTTTGAGTTCCCAAGGAAGGACATGTGCCTTTCGGCCTTAAAGAGGATCGAAGAAGA
GAAGCCAGATTGCACCAAGGCCCGCTGTGAAGTGCAGTTCTCTCCACGTTGCCCTGAAGATTCC
ATTCTGATTGAGGGCTATGCTCCCCCCGGGGAGTGTTGTCCTTTACCCAGCCGCTGCGTGTGTG
ACCCTGCGGGCTGTCTGCGCAAAGTCTGCCAGCCGGGATACCTGAACATTCTAGTGTCCAAAGC
CTCAGGGAAGCCGGGAGAGTGCTGTGACCTCTATGAGTGTAAACCAGTTTTCAGCGTGGACTGC
AGCACCGTGGAGTGCCCCCCTGTCCAGCAGGCCGTGTGCCCCCTGGACAGCTACGAAACGCAAG
TGCGGCTCACAGCGGATGGCTGCTGTACCCTGCCAGCAAGATGCGAGTGTCTCTCTGGCTTATG
TGCTTTTCCCGTTTGTGAGGTGGGATCTACTCCCCGAATAGTCTCTCGTGGAGATGGGACACCT
GGAAAGTGCTGTGATGTCTTTGAATGTGTTAATGAAACAAAGCCAGCCTGCGTGTTCAACAGTG
TGGAGTATTACGATGGAGACATGTTTCGAATGGACAACTGTCGGTTCTGTCGGTGCCAAGGGGG
CGTCTCCATCTGCTTCACCGCCCAGTGTGGGGAACTGAACTGCGAAAGATACTATGTGCCTGAG
GGGGAGTGTTGCCCCGTGTGTGAAGATCCCATCTATCCTTTCAACAACCCCGCCGGCTGCTACG
CCAACGGCCAGATCCGCGCCCACGGGGACCGGTGGCGGGAAGACGACTGCACCTTCTGCCAGTG
TATCAATGGAGAACCCCACTGCGTGGCCACCGCCTGCGGGCAGAGCTGCATGCACCCCGTGAAA
GTGCCTGGGGAGTGTTGCCCCGTGTGTGAAGAACCAACCTACATCACAATTGATCCACCTGCGT
GCGGGGAGTTGTCAAACTGTACTCTGAAAGAGAAGGACTGCGTTTACGGCTTCAAACTGGATCA
CAATGGCTGTCGAACCTGTCAGTGCAAAAACAGGGAGGAACGATGCTTAGCCCTTAAAAGGGCC
TGCACTTTGGACTGTCCCTTCGGCTTCCTCACCGATGTCCACAACTGTGAGCTCTGTCAGTGCC
GCCCACGGCCCAAGAAATGCAGACCAACAATATGCGACAAGTTTTGTCCTCTTGGATTCCTGAG
GAACAAGCACGGCTGTGACATCTGTCGCTGTAAGAAGTGTCCAGAGCTTCCATGCAGCAAGGTC
TGCCCCTTGGGCTTCCAGGAGGACAGTCACGGCTGTCTCATCTGCAAGTGCAGAGAGGTCCCTA
CTTCAGCCGGGCCACCTGTCCTGTCAGGCACATGTCTGTCCATGGATGGTCATCACCATAAAAA
CGAGGAGAGCTGGCATGATGGCTGCCGGGAATGCTACTGTCACAATGGGAAGGAAATGTGTGCC
CTCATCACCTGCCCAGTGCCTGCCTGCGGCAACCCCACCATCCGGCCCGGACAGTGCTGCCCAT
CCTGCGCAGATGACTTCGTGGTGCAGAAGCCCGAGCTCAGCACGCCTTCCATTTGCCACGCCCC
TGGAGGAGAGTACTTTGTGGAAGGGGAAACGTGGAACATTGACTCCTGTACGCAGTGCACCTGT
CACAGTGGCCGAGTGCTGTGTGAGACGGAGGTGTGCCCACCACTGCTCTGCCAGAACCCCTCAC
GCACCCAGGACTCCTGCTGCCCACAGTGTACAGAGGACCCTCTTCAGCCTTCCACATCCCATAA
TGAGAGCGTGCCTAGCTACTGCAGGAATGATGAAGGGGACATCTTCCTGGCGGCCGAGTCCTGG
AAGCCTGACGTCTGCACCAGCTGCGTGTGCATGGATAGCTCCATTAGCTGCTACTCCGAGTCTT
GCCCTTCGGTGGCCTGCGAACGGCCCGTTTTGAGGAAAGGCCAGTGTTGCCCCTACTGTCTAGA
CACGATTCCAAAGAAAGTGGTGTGTCACTTCAGTGGGAAGACCTACGCTGACGAGGAGCGGTGG
GACATCGACAGCTGCACACATTGCTACTGCCTGCAAGGCCAGACCCTCTGCTCGACTGTCAGCT
GCCCACCATTACCCTGTGCCGAGCCCATCAAGGTGGAAGGGAGTTGCTGCCCGATGTGCCCAGA
AATGTATGTGCCAGAGCCAACCAATGTGCCCATTGAGAAGAAGAATCATCGCGGCGAGATTGAC
CTGGAGGTTCCCATGTGGCCCACCCCAAGTGAAAATGACATCATCCACCTCCCTAGAGATATGG
GTCACCTCCAGGTAGATTACAGAGACAATAACAGGCTGCATCCAAGTGAAGACTCATCATTGGA
CTCCATTGTCCCCGTTGTGGTTCCCATAATCATATGCCTGTCCATCATAATAGCATTCCTGCTC
ATCAACCAGAAGAAACAGTGGATACCGCTGCTGTGCTGGTACCGGACACCAACCAAGCCTTCTT
CCTTGAATAATCAGCTGGTATCGGTGGACTGCAAGAAAGGCACTCGGGTCCAGGTGGACGGTTC
CCAGAGAATGCTAAGAATCGCTGAACCAGATGCACGATTCAGTGGCTTCTACAGCATGCAGAAA
CAGAACCATCTACAGGCAGACAATTTCTACCAAACGGTGTGAACGCAGGCAGCAGTGCGGATGA
GGTTTCGAAAGACGGAGAACAACGACAAAAAAACAAACAAACAAACAAACAAACAAAAAAACAA
AAAAATATCTGCTCTTTAAAGTAAACTAGGATTTGCGCACTTGCTTAGTGTATTGTATTGGATT
GTGACTTGGGGTCCAGCACTAAGGGCTGGACTGGGATGGGCTCTGTCTACAGCACTGTGCAGAA
CAAGCATTCCCACTTGGCCTCAAGATAACTGACCACATGTTTTCATAGAACCAAAGTTTTAAAA
CTTGCTAAAGTATATTTGCTTGTAAGATAGCTGTAAAGACATTCGGGGGTGGGGACAGAGAGTT
TGGTGGGGGAAATGGGTCGGGAGGGTAGTGTTGGGAAGAAAAACAATCGGTCAGCTTGGCTTGG
GGAGAAAGCCAGTAAAAATAAAGGCAATTCGTGGCCCAGAGGAATTTTTTTTTCCTGTTACTCT
CAAAGACTGTTGGTTGCTGCAGTGGTCAGGGCTGAATAAGCAGGAACACAGAAGGCCTTGGAAC
CCAGCTGCTATACCACCAGACAAGCGCATCCGAACTCTTGCTAGCCATCCCAGGTCTAAAGCCA
CAAGTTTCTCTTCTATACAGTCACAGCTGCAGTAGGCGGTGAGGAAGGGCAGGGAAGTGGCTAG
CGGACGTGTCTCGAAAGCGGGTTATCGAGGTTGTATACGGTTTCTTTTTGCTGCTTCTGTTTTC
TTCCGTGCCAACCAGCCAGTTCCTAGTAGAGACAGCAGATGAGTAAGAACAAGGTCAGTTCTTG
GACCCGAGCACTGGCGCTTTGCTTGCCACATGGCAGGGAGGAGGGCACCGGCGAAGGACAGCAG
GCATTTCCAGGGGCTACACTTCATTGTTTATTGTTGTTTTCTTCTGTTATATCATTGGTGGTTG
TTCATAGTTTTGTTGAAGCTCTAGCTCAAGAAGAAACTTTTGAAGAAAAAAAAAAACACAACTC
TTTGGGATTGTTTTTCCTTATTATATACCGATTCTACAAAATAGAAACGACTTCATTCTAATTG
TCTATTATTCAAGCACCTTTGTTGAAGCTCGGGAAAAAAAAAAGATGCCTCTTTAAACTTTAGT
GATTATAGGAATATTTATGTGACTATCTTACGCTTCAGAAACAAGAGTATTTGTGTGCATGTGT
ATATAATATATATGCATATATATTTATACACATACAATTTATGTTTTCCTGTTGAATGTATTTT
TATGAGATTTTAACCAGAGCAAAGGCAGATAAACAGGCATTCCATAGAGATGCTTTCTGACCAC
TTAGGGGTTTTTTTTAATACCATAATCTCATTTAACTGCAGTTTAATTGCAAAGAAAAGGGGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACTTGGAGCAACCAGCATT
TCCCATGCTATGGAAAGGATATTTCTCTATTAAAATGTTTCTCCTTCACTTGGATTTCCTTTCA
CCTGGTTTCCAGTTTGCTCTCTGGCCAGAGACATGGATGCCAGTTTTGTATCTGAATCACTAAT
CAGCTCCTGGGTTTTGGTTTTGTTGTTTTGTTTTTTTTTTTCTTTCAAACAACTGTTTGAAACA
ACTACTGGAATATTGTCCGCAATAAGCTGGAAGTTTGTTGTAGTTTGCCTCGAATCTAACTGAC
TGTATGCTATAGTGTTAACTTTTCAAACAGCTCTTAGCACTTTTATACTAATGACCCACTTGTG
CATTGATTTTCCTTTAAAAATGCTTGTTGTGAAAGACACGGATACCCAGTATGCTTAATGTGAA
AAGAAAATATGTTCTGTTTTGTAAAGGAACTTTCAAGTATTGTTGTAAATACTTGGACAGAGGT
TGCTGAACTTAAAAAAAATTAATTTATTATTATAATGACCTAATTTATTAATCTGAAGATTAAC
CATTTTTTTTGTCTTAGAATATCAAAAAGAAAAAAGGTGTTCTAGCTGTTTGCATCAAAGGAAA
GATTTATTATCGAGGGGCAATATTTTTTATCTATTTCCAAAATAAATTTGTTAATGATATGTTA
CTGAAATAGATTTACATCAGCCTGATTAGTATAAAATTTTGTTGACAATTTATCCATTCCTGGC
ATAAGAAAGAAAAAGAACTTTATCGAAAAAAAAATTGTAAATGCTTGCTTTTTTGTTGTTGTTT
TTTTTTTTTTCAATCATGCCCATATGAAAATACTAACAGGATATAGGACAAGGTGTAAATTTTT
TTTTATTATTTTAAAGATATGATTTATCCTGAGTGCTGTATCTGTTACTCTTCTACTTTGGTTC
CTGTTGTGCTCTTGTAAAAGAAAAACAAATATAATTTCCTGAAGAATAAACCAGGCATATAGCA
CTTGGAGTGCA

hide sequence

RefSeq Acc Id:

XM_006239625 ⟹ XP_006239687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,447,983 - 22,622,459 (-)	NCBI
mRatBN7.2	6	16,695,864 - 16,870,262 (-)	NCBI
Rnor_6.0	6	788,490 - 962,663 (+)	NCBI
Rnor_5.0	6	780,568 - 954,493 (+)	NCBI

Sequence:

show sequence

GGGCGCAGCCGGAGCAGCGGAGGCTCCAGCCATAAACAAGCGCCCGGAGGAGCGGCGCGGGAGA
GAGCCGAGCCGGGCGCAAGGAACGGACGCCACGGACCTTCTGCTGAGCCACCGCGCCCACTCGG
CGGCTCGGGAGGCGGGGACCGGCCCGGAGGCTGCGCTGCCGTCGTCTTTCCCCGGCGATCAGGA
GCAGCGCGGAGGACCAGAAGGAGCCACCAGCCCTGCTTCGGAGCGGTGCGCAGCCACCGCCGCC
GCCAGAAGTTTGGGTTGAACCGGAGCTGCCGCGAGGAAACTTTTTTTCCTCTTTTTCCCCTCCC
GCCCGGGAGGAAAAGGAGGAGGAGGGGAAGCCACCCGCCACTGCTGCCGCTGGCGCCAACGCTC
GTGGGCTCCGGGTCGGCGCGGCCCGCAGGGGCGGCGGGGGCCTCGCCCCGAGAGGGGAGGAGCG
CCCCGGGGGCCCCTAGTGGGGCACGAGGACCGCGGGCTGCGGGTGCGGCGGCGGCGCGTGTGCC
CCGCGCAGGGGAGGGCGCCCGCCCCGCTCCCGGCCCGGCTGCGAGGAGGAGGCGGCGGCACAGG
AGGATGTACTTGGTGGCGGGGGGCAGGGGGCTGGCCGGCTGCGGGCACCTCTCGGTCTCGCTGC
TGGGGCTGCTGCTGCTGCTGGCGCGCTCAGGCACCCGGGCGCTGGTCTGCCTGCCCTGTGACGA
GTCCAAGTGCGAGGAGCCTCGGAGCTGCCCGGGAAGCATCGTGCAGGGCGTCTGCGGCTGCTGC
TACATGTGCGCCCGCCAGAGGAACGAGAGCTGCGGTGGAGCCTATGGGCTCCATGGAGCCTGCG
ACCGGGGGCTGCGCTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCATCACCGAGTATGAAGT
GGGCGTCTGCGAAGACGAGGACTGGGACGACGACCAGCTGCTCGGTTTTGAGCCCTGCAATGAG
AACCTCATCTCGGGCTGCAATATCATCAACGGGAGATGCGAATGCAGTACCATCCGAACCTGCA
ACAACCCCTTTGAGTTCCCAAGGAAGGACATGTGCCTTTCGGCCTTAAAGAGGATCGAAGTTTT
CAGCGTGGACTGCAGCACCGTGGAGTGCCCCCCTGTCCAGCAGGCCGTGTGCCCCCTGGACAGC
TACGAAACGCAAGTGCGGCTCACAGCGGATGGCTGCTGTACCCTGCCAGCAAGATGCGAGTGTC
TCTCTGGCTTATGTGCTTTTCCCGTTTGTGAGGTGGGATCTACTCCCCGAATAGTCTCTCGTGG
AGATGGGACACCTGGAAAGTGCTGTGATGTCTTTGAATGTGTTAATGAAACAAAGCCAGCCTGC
GTGTTCAACAGTGTGGAGTATTACGATGGAGACATGTTTCGAATGGACAACTGTCGGTTCTGTC
GGTGCCAAGGGGGCGTCTCCATCTGCTTCACCGCCCAGTGTGGGGAACTGAACTGCGAAAGATA
CTATGTGCCTGAGGGGGAGTGTTGCCCCGTGTGTGAAGATCCCATCTATCCTTTCAACAACCCC
GCCGGCTGCTACGCCAACGGCCAGATCCGCGCCCACGGGGACCGGTGGCGGGAAGACGACTGCA
CCTTCTGCCAGTGTATCAATGGAGAACCCCACTGCGTGGCCACCGCCTGCGGGCAGAGCTGCAT
GCACCCCGTGAAAGTGCCTGGGGAGTGTTGCCCCGTGTGTGAAGAACCAACCTACATCACAATT
GATCCACCTGCGTGCGGGGAGTTGTCAAACTGTACTCTGAAAGAGAAGGACTGCGTTTACGGCT
TCAAACTGGATCACAATGGCTGTCGAACCTGTCAGTGCAAAAACAGGGAGGAACGATGCTTAGC
CCTTAAAAGGGCCTGCACTTTGGACTGTCCCTTCGGCTTCCTCACCGATGTCCACAACTGTGAG
CTCTGTCAGTGCCGCCCACGGCCCAAGAAATGCAGACCAACAATATGCGACAAGTTTTGTCCTC
TTGGATTCCTGAGGAACAAGCACGGCTGTGACATCTGTCGCTGTAAGAAGTGTCCAGAGCTTCC
ATGCAGCAAGGTCTGCCCCTTGGGCTTCCAGGAGGACAGTCACGGCTGTCTCATCTGCAAGTGC
AGAGAGGTCCCTACTTCAGCCGGGCCACCTGTCCTGTCAGGCACATGTCTGTCCATGGATGGTC
ATCACCATAAAAACGAGGAGAGCTGGCATGATGGCTGCCGGGAATGCTACTGTCACAATGGGAA
GGAAATGTGTGCCCTCATCACCTGCCCAGTGCCTGCCTGCGGCAACCCCACCATCCGGCCCGGA
CAGTGCTGCCCATCCTGCGCAGATGACTTCGTGGTGCAGAAGCCCGAGCTCAGCACGCCTTCCA
TTTGCCACGCCCCTGGAGGAGAGTACTTTGTGGAAGGGGAAACGTGGAACATTGACTCCTGTAC
GCAGTGCACCTGTCACAGTGGCCGAGTGCTGTGTGAGACGGAGGTGTGCCCACCACTGCTCTGC
CAGAACCCCTCACGCACCCAGGACTCCTGCTGCCCACAGTGTACAGAGGACCCTCTTCAGCCTT
CCACATCCCATAATGAGAGCGTGCCTAGCTACTGCAGGAATGATGAAGGGGACATCTTCCTGGC
GGCCGAGTCCTGGAAGCCTGACGTCTGCACCAGCTGCGTGTGCATGGATAGCTCCATTAGCTGC
TACTCCGAGTCTTGCCCTTCGGTGGCCTGCGAACGGCCCGTTTTGAGGAAAGGCCAGTGTTGCC
CCTACTGTCTAGAAGACACGATTCCAAAGAAAGTGGTGTGTCACTTCAGTGGGAAGACCTACGC
TGACGAGGAGCGGTGGGACATCGACAGCTGCACACATTGCTACTGCCTGCAAGGCCAGACCCTC
TGCTCGACTGTCAGCTGCCCACCATTACCCTGTGCCGAGCCCATCAAGGTGGAAGGGAGTTGCT
GCCCGATGTGCCCAGAAATGTATGTGCCAGAGCCAACCAATGTGCCCATTGAGAAGAAGAATCA
TCGCGGCGAGATTGACCTGGAGGTTCCCATGTGGCCCACCCCAAGTGAAAATGACATCATCCAC
CTCCCTAGAGATATGGGTCACCTCCAGGTAGATTACAGAGACAATAACAGGCTGCATCCAAGTG
AAGACTCATCATTGGACTCCATTGTCCCCGTTGTGGTTCCCATAATCATATGCCTGTCCATCAT
AATAGCATTCCTGCTCATCAACCAGAAGAAACAGTGGATACCGCTGCTGTGCTGGTACCGGACA
CCAACCAAGCCTTCTTCCTTGAATAATCAGCTGGTATCGGTGGACTGCAAGAAAGGCACTCGGG
TCCAGGTGGACGGTTCCCAGAGAATGCTAAGAATCGCTGAACCAGATGCACGATTCAGTGGCTT
CTACAGCATGCAGAAACAGAACCATCTACAGGCAGACAATTTCTACCAAACGGTGTGAACGCAG
GCAGCAGTGCGGATGAGGTTTCGAAAGACGGAGAACAACGACAAAAAAACAAACAAACAAACAA
ACAAACAAAAAAACAAAAAAATATCTGCTCTTTAAAGTAAACTAGGATTTGCGCACTTGCTTAG
TGTATTGTATTGGATTGTGACTTGGGGTCCAGCACTAAGGGCTGGACTGGGATGGGCTCTGTCT
ACAGCACTGTGCAGAACAAGCATTCCCACTTGGCCTCAAGATAACTGACCACATGTTTTCATAG
AACCAAAGTTTTAAAACTTGCTAAAGTATATTTGCTTGTAAGATAGCTGTAAAGACATTCGGGG
GTGGGGACAGAGAGTTTGGTGGGGGAAATGGGTCGGGAGGGTAGTGTTGGGAAGAAAAACAATC
GGTCAGCTTGGCTTGGGGAGAAAGCCAGTAAAAATAAAGGCAATTCGTGGCCCAGAGGAATTTT
TTTTTCCTGTTACTCTCAAAGACTGTTGGTTGCTGCAGTGGTCAGGGCTGAATAAGCAGGAACA
CAGAAGGCCTTGGAACCCAGCTGCTATACCACCAGACAAGCGCATCCGAACTCTTGCTAGCCAT
CCCAGGTCTAAAGCCACAAGTTTCTCTTCTATACAGTCACAGCTGCAGTAGGCGGTGAGGAAGG
GCAGGGAAGTGGCTAGCGGACGTGTCTCGAAAGCGGGTTATCGAGGTTGTATACGGTTTCTTTT
TGCTGCTTCTGTTTTCTTCCGTGCCAACCAGCCAGTTCCTAGTAGAGACAGCAGATGAGTAAGA
ACAAGGTCAGTTCTTGGACCCGAGCACTGGCGCTTTGCTTGCCACATGGCAGGGAGGAGGGCAC
CGGCGAAGGACAGCAGGCATTTCCAGGGGCTACACTTCATTGTTTATTGTTGTTTTCTTCTGTT
ATATCATTGGTGGTTGTTCATAGTTTTGTTGAAGCTCTAGCTCAAGAAGAAACTTTTGAAGAAA
AAAAAAAACACAACTCTTTGGGATTGTTTTTCCTTATTATATACCGATTCTACAAAATAGAAAC
GACTTCATTCTAATTGTCTATTATTCAAGCACCTTTGTTGAAGCTCGGGAAAAAAAAAAGATGC
CTCTTTAAACTTTAGTGATTATAGGAATATTTATGTGACTATCTTACGCTTCAGAAACAAGAGT
ATTTGTGTGCATGTGTATATAATATATATGCATATATATTTATACACATACAATTTATGTTTTC
CTGTTGAATGTATTTTTATGAGATTTTAACCAGAGCAAAGGCAGATAAACAGGCATTCCATAGA
GATGCTTTCTGACCACTTAGGGGTTTTTTTTAATACCATAATCTCATTTAACTGCAGTTTAATT
GCAAAGAAAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACT
TGGAGCAACCAGCATTTCCCATGCTATGGAAAGGATATTTCTCTATTAAAATGTTTCTCCTTCA
CTTGGATTTCCTTTCACCTGGTTTCCAGTTTGCTCTCTGGCCAGAGACATGGATGCCAGTTTTG
TATCTGAATCACTAATCAGCTCCTGGGTTTTGGTTTTGTTGTTTTGTTTTTTTTTTTCTTTCAA
ACAACTGTTTGAAACAACTACTGGAATATTGTCCGCAATAAGCTGGAAGTTTGTTGTAGTTTGC
CTCGAATCTAACTGACTGTATGCTATAGTGTTAACTTTTCAAACAGCTCTTAGCACTTTTATAC
TAATGACCCACTTGTGCATTGATTTTCCTTTAAAAATGCTTGTTGTGAAAGACACGGATACCCA
GTATGCTTAATGTGAAAAGAAAATATGTTCTGTTTTGTAAAGGAACTTTCAAGTATTGTTGTAA
ATACTTGGACAGAGGTTGCTGAACTTAAAAAAAATTAATTTATTATTATAATGACCTAATTTAT
TAATCTGAAGATTAACCATTTTTTTTGTCTTAGAATATCAAAAAGAAAAAAGGTGTTCTAGCTG
TTTGCATCAAAGGAAAGATTTATTATCGAGGGGCAATATTTTTTATCTATTTCCAAAATAAATT
TGTTAATGATATGTTACTGAAATAGATTTACATCAGCCTGATTAGTATAAAATTTTGTTGACAA
TTTATCCATTCCTGGCATAAGAAAGAAAAAGAACTTTATCGAAAAAAAAATTGTAAATGCTTGC
TTTTTTGTTGTTGTTTTTTTTTTTTTCAATCATGCCCATATGAAAATACTAACAGGATATAGGA
CAAGGTGTAAATTTTTTTTTATTATTTTAAAGATATGATTTATCCTGAGTGCTGTATCTGTTAC
TCTTCTACTTTGGTTCCTGTTGTGCTCTTGTAAAAGAAAAACAAATATAATTTCCTGAAGAATA
AACCAGGCATATAGCACTTGGAGTGCA

hide sequence

RefSeq Acc Id:

XM_039111891 ⟹ XP_038967819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,447,983 - 22,622,459 (-)	NCBI
mRatBN7.2	6	16,695,864 - 16,870,262 (-)	NCBI

RefSeq Acc Id:

XM_039111892 ⟹ XP_038967820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,447,983 - 22,539,492 (-)	NCBI
mRatBN7.2	6	16,695,864 - 16,787,316 (-)	NCBI

RefSeq Acc Id:

XM_039111893 ⟹ XP_038967821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	22,447,983 - 22,582,359 (-)	NCBI
mRatBN7.2	6	16,695,864 - 16,830,187 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001162574	(Get FASTA)	NCBI Sequence Viewer
	XP_006239685	(Get FASTA)	NCBI Sequence Viewer
	XP_006239687	(Get FASTA)	NCBI Sequence Viewer
	XP_038967819	(Get FASTA)	NCBI Sequence Viewer
	XP_038967820	(Get FASTA)	NCBI Sequence Viewer
	XP_038967821	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005983
	ENSRNOP00000005983.4
	ENSRNOP00000088000
	ENSRNOP00000088000.1
	ENSRNOP00000108338.1

RefSeq Acc Id:	NP_001162574 ⟸ NM_001169103
- Peptide Label:	precursor
- UniProtKB:	D4AEK3 (UniProtKB/TrEMBL), A6H9W6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYLVAGGRGLAGCGHLSVSLLGLLLLLARSGTRALVCLPCDESKCEEPRSCPGSIVQGVCGCCY MCARQRNESCGGAYGLHGACDRGLRCVIRPPLNGDSITEYEVGVCEDEDWDDDQLLGFEPCNEN LISGCNIINGRCECSTIRTCNNPFEFPRKDMCLSALKRIEEEKPDCTKARCEVQFSPRCPEDSI LIEGYAPPGECCPLPSRCVCDPAGCLRKVCQPGYLNILVSKASGKPGECCDLYECKPVFSVDCS TVECPPVQQAVCPLDSYETQVRLTADGCCTLPARCECLSGLCAFPVCEVGSTPRIVSRGDGTPG KCCDVFECVNETKPACVFNSVEYYDGDMFRMDNCRFCRCQGGVSICFTAQCGELNCERYYVPEG ECCPVCEDPIYPFNNPAGCYANGQIRAHGDRWREDDCTFCQCINGEPHCVATACGQSCMHPVKV PGECCPVCEEPTYITIDPPACGELSNCTLKEKDCVYGFKLDHNGCRTCQCKNREERCLALKRAC TLDCPFGFLTDVHNCELCQCRPRPKKCRPTICDKFCPLGFLRNKHGCDICRCKKCPELPCSKVC PLGFQEDSHGCLICKCREVPTSAGPPVLSGTCLSMDGHHHKNEESWHDGCRECYCHNGKEMCAL ITCPVPACGNPTIRPGQCCPSCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCH SGRVLCETEVCPPLLCQNPSRTQDSCCPQCTEDPLQPSTSHNESVPSYCRNDEGDIFLAAESWK PDVCTSCVCMDSSISCYSESCPSVACERPVLRKGQCCPYCLEDTIPKKVVCHFSGKTYADEERW DIDSCTHCYCLQGQTLCSTVSCPPLPCAEPIKVEGSCCPMCPEMYVPEPTNVPIEKKNHRGEID LEVPMWPTPSENDIIHLPRDMGHLQVDYRDNNRLHPSEDSSLDSIVPVVVPIIICLSIIIAFLL INQKKQWIPLLCWYRTPTKPSSLNNQLVSVDCKKGTRVQVDGSQRMLRIAEPDARFSGFYSMQK QNHLQADNFYQTV hide sequence

RefSeq Acc Id:	XP_006239685 ⟸ XM_006239623
- Peptide Label:	isoform X1
- UniProtKB:	A6H9W6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYLVAGGRGLAGCGHLSVSLLGLLLLLARSGTRALVCLPCDESKCEEPRSCPGSIVQGVCGCCY MCARQRNESCGGAYGLHGACDRGLRCVIRPPLNGDSITEYEVGVCEDEDWDDDQLLGFEPCNEN LISGCNIINGRCECSTIRTCNNPFEFPRKDMCLSALKRIEEEKPDCTKARCEVQFSPRCPEDSI LIEGYAPPGECCPLPSRCVCDPAGCLRKVCQPGYLNILVSKASGKPGECCDLYECKPVFSVDCS TVECPPVQQAVCPLDSYETQVRLTADGCCTLPARCECLSGLCAFPVCEVGSTPRIVSRGDGTPG KCCDVFECVNETKPACVFNSVEYYDGDMFRMDNCRFCRCQGGVSICFTAQCGELNCERYYVPEG ECCPVCEDPIYPFNNPAGCYANGQIRAHGDRWREDDCTFCQCINGEPHCVATACGQSCMHPVKV PGECCPVCEEPTYITIDPPACGELSNCTLKEKDCVYGFKLDHNGCRTCQCKNREERCLALKRAC TLDCPFGFLTDVHNCELCQCRPRPKKCRPTICDKFCPLGFLRNKHGCDICRCKKCPELPCSKVC PLGFQEDSHGCLICKCREVPTSAGPPVLSGTCLSMDGHHHKNEESWHDGCRECYCHNGKEMCAL ITCPVPACGNPTIRPGQCCPSCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCH SGRVLCETEVCPPLLCQNPSRTQDSCCPQCTEDPLQPSTSHNESVPSYCRNDEGDIFLAAESWK PDVCTSCVCMDSSISCYSESCPSVACERPVLRKGQCCPYCLDTIPKKVVCHFSGKTYADEERWD IDSCTHCYCLQGQTLCSTVSCPPLPCAEPIKVEGSCCPMCPEMYVPEPTNVPIEKKNHRGEIDL EVPMWPTPSENDIIHLPRDMGHLQVDYRDNNRLHPSEDSSLDSIVPVVVPIIICLSIIIAFLLI NQKKQWIPLLCWYRTPTKPSSLNNQLVSVDCKKGTRVQVDGSQRMLRIAEPDARFSGFYSMQKQ NHLQADNFYQTV hide sequence

RefSeq Acc Id:	XP_006239687 ⟸ XM_006239625
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A5L9 (UniProtKB/TrEMBL), A6H9W6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYLVAGGRGLAGCGHLSVSLLGLLLLLARSGTRALVCLPCDESKCEEPRSCPGSIVQGVCGCCY MCARQRNESCGGAYGLHGACDRGLRCVIRPPLNGDSITEYEVGVCEDEDWDDDQLLGFEPCNEN LISGCNIINGRCECSTIRTCNNPFEFPRKDMCLSALKRIEVFSVDCSTVECPPVQQAVCPLDSY ETQVRLTADGCCTLPARCECLSGLCAFPVCEVGSTPRIVSRGDGTPGKCCDVFECVNETKPACV FNSVEYYDGDMFRMDNCRFCRCQGGVSICFTAQCGELNCERYYVPEGECCPVCEDPIYPFNNPA GCYANGQIRAHGDRWREDDCTFCQCINGEPHCVATACGQSCMHPVKVPGECCPVCEEPTYITID PPACGELSNCTLKEKDCVYGFKLDHNGCRTCQCKNREERCLALKRACTLDCPFGFLTDVHNCEL CQCRPRPKKCRPTICDKFCPLGFLRNKHGCDICRCKKCPELPCSKVCPLGFQEDSHGCLICKCR EVPTSAGPPVLSGTCLSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPTIRPGQ CCPSCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQ NPSRTQDSCCPQCTEDPLQPSTSHNESVPSYCRNDEGDIFLAAESWKPDVCTSCVCMDSSISCY SESCPSVACERPVLRKGQCCPYCLEDTIPKKVVCHFSGKTYADEERWDIDSCTHCYCLQGQTLC STVSCPPLPCAEPIKVEGSCCPMCPEMYVPEPTNVPIEKKNHRGEIDLEVPMWPTPSENDIIHL PRDMGHLQVDYRDNNRLHPSEDSSLDSIVPVVVPIIICLSIIIAFLLINQKKQWIPLLCWYRTP TKPSSLNNQLVSVDCKKGTRVQVDGSQRMLRIAEPDARFSGFYSMQKQNHLQADNFYQTV hide sequence

Ensembl Acc Id:

ENSRNOP00000005983 ⟸ ENSRNOT00000005983

RefSeq Acc Id:	XP_038967819 ⟸ XM_039111891
- Peptide Label:	isoform X3
- UniProtKB:	A6H9W6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967821 ⟸ XM_039111893
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038967820 ⟸ XM_039111892
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000088000 ⟸ ENSRNOT00000094931

Ensembl Acc Id:

ENSRNOP00000108338 ⟸ ENSRNOT00000124837

Protein Domains

Antistasin-like IGFBP N-terminal VWFC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEK3-F1-model_v2	AlphaFold	D4AEK3	1-1037	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694350

Promoter ID:

EPDNEW_R4874

Type:

initiation region

Name:

Crim1_1

Description:

cysteine rich transmembrane BMP regulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	788,551 - 788,611	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308710	AgrOrtholog
BioCyc Gene	G2FUF-38481	BioCyc
Ensembl Genes	ENSRNOG00000004208	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005983	ENTREZGENE
	ENSRNOT00000005983.7	UniProtKB/TrEMBL
	ENSRNOT00000094931	ENTREZGENE
	ENSRNOT00000094931.2	UniProtKB/TrEMBL
	ENSRNOT00000124837.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.40.20	UniProtKB/TrEMBL
	6.20.200.20	UniProtKB/TrEMBL
	Antistasin, domain 1	UniProtKB/TrEMBL
InterPro	CRIM1	UniProtKB/TrEMBL
	CRIM1_C	UniProtKB/TrEMBL
	Growth_fac_rcpt_N_dom	UniProtKB/TrEMBL
	IGFBP-like	UniProtKB/TrEMBL
	Prot_inh_I14/15_hirudin/antisn	UniProtKB/TrEMBL
	Prot_inh_I15_antistasin-like	UniProtKB/TrEMBL
	VWF_C	UniProtKB/TrEMBL
KEGG Report	rno:298744	UniProtKB/TrEMBL
NCBI Gene	298744	ENTREZGENE
PANTHER	CYSTEINE-RICH MOTOR NEURON 1 PROTEIN	UniProtKB/TrEMBL
	CYSTEINE-RICH MOTOR NEURON 1 PROTEIN	UniProtKB/TrEMBL
Pfam	Antistasin	UniProtKB/TrEMBL
	CRIM1_C	UniProtKB/TrEMBL
	IGFBP	UniProtKB/TrEMBL
	VWC	UniProtKB/TrEMBL
PhenoGen	Crim1	PhenoGen
PROSITE	ANTISTASIN	UniProtKB/TrEMBL
	IGFBP_N_2	UniProtKB/TrEMBL
	VWFC_1	UniProtKB/TrEMBL
	VWFC_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004208	RatGTEx
SMART	SM00121	UniProtKB/TrEMBL
	VWC	UniProtKB/TrEMBL
	VWC_out	UniProtKB/TrEMBL
Superfamily-SCOP	Antihaemostatic	UniProtKB/TrEMBL
	FnI-like domain	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
UniProt	A0A8I6A5L9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LSQ0_RAT	UniProtKB/TrEMBL
	A6H9W6	ENTREZGENE, UniProtKB/TrEMBL
	D4AEK3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-22	Crim1	cysteine rich transmembrane BMP regulator 1	Crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	Crim1_predicted	cysteine-rich motor neuron 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Crim1_predicted	cysteine-rich motor neuron 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message