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Gene: Tjap1 (tight junction associated protein 1) Rattus norvegicus

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Symbol:

Tjap1

Name:

tight junction associated protein 1

RGD ID:

1308708

Description:

Predicted to be involved in Golgi organization. Predicted to be located in endosome and plasma membrane. Predicted to be active in trans-Golgi network. Orthologous to human TJAP1 (tight junction associated protein 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC316233; tight junction protein 4 (peripheral); tight junction-associated protein 1; Tjp4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,198,984 - 22,223,201 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	22,199,676 - 22,223,201 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,701,418 - 14,725,623 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,701,468 - 14,725,751 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	23,285,675 - 23,309,866 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,348,063 - 28,372,023 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,649,062 - 26,673,254 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,086,452 - 17,110,770 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,086,475 - 17,110,770 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	15,983,140 - 16,007,447 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,264,023 - 10,288,320 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	12,448,777 - 12,473,073 (+)	NCBI		Celera
RGSC_v3.1	9	10,259,315 - 10,285,514 (+)	NCBI
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (EXP,ISO)

dexamethasone (EXP,ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

imidacloprid (EXP)

ivermectin (ISO)

lead(0) (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

ozone (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

thiabendazole (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (IBA,ISO)

Cellular Component

cytoplasm (ISO)

endosome (ISO)

Golgi apparatus (ISO)

membrane (IEA)

plasma membrane (ISO)

trans-Golgi network (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22841714

Genomics

Comparative Map Data

Tjap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,198,984 - 22,223,201 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	22,199,676 - 22,223,201 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,701,418 - 14,725,623 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,701,468 - 14,725,751 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	23,285,675 - 23,309,866 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,348,063 - 28,372,023 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,649,062 - 26,673,254 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,086,452 - 17,110,770 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,086,475 - 17,110,770 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	15,983,140 - 16,007,447 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,264,023 - 10,288,320 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	12,448,777 - 12,473,073 (+)	NCBI		Celera
RGSC_v3.1	9	10,259,315 - 10,285,514 (+)	NCBI
Cytogenetic Map	9	q12	NCBI

TJAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,477,570 - 43,506,554 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,477,523 - 43,506,562 (+)	Ensembl			hg38	GRCh38
GRCh37	6	43,445,308 - 43,474,292 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,553,289 - 43,582,269 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	43,553,288 - 43,582,269	NCBI
Celera	6	44,996,876 - 45,025,915 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,163,302 - 43,192,330 (+)	NCBI		HuRef
CHM1_1	6	43,448,397 - 43,477,426 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,306,318 - 43,335,293 (+)	NCBI		T2T-CHM13v2.0

Tjap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,568,777 - 46,593,991 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,568,777 - 46,593,952 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	46,257,851 - 46,283,063 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,257,851 - 46,283,026 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	46,394,825 - 46,419,962 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,721,457 - 45,746,594 (-)	NCBI		MGSCv36	mm8
Celera	17	49,690,975 - 49,716,096 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Tjap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,314,416 - 9,336,420 (+)	Ensembl
ChiLan1.0	NW_004955437	9,314,472 - 9,337,021 (+)	NCBI	ChiLan1.0	ChiLan1.0

TJAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,977,262 - 58,006,754 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,847,052 - 53,876,551 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,069,119 - 43,098,623 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,360,781 - 44,389,734 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,360,781 - 44,392,919 (+)	Ensembl			panPan2	panpan1.1

TJAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,944,445 - 11,968,660 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,944,244 - 11,968,998 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	11,970,696 - 11,994,874 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,428,118 - 12,452,301 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,428,182 - 12,452,288 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	11,953,560 - 11,977,738 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,040,441 - 12,064,616 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,133,924 - 12,158,108 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tjap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,437,079 - 47,462,385 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,498,459 - 16,504,474 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,497,814 - 16,523,086 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TJAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,475,243 - 38,501,527 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	38,475,181 - 38,501,532 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,078,695 - 44,082,575 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TJAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,652,841 - 28,681,806 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,651,418 - 28,660,013 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	43,533,185 - 43,562,390 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tjap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,135,274 - 16,144,798 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	16,138,558 - 16,160,798 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tjap1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	83,587,694 - 83,611,834 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tjap1
293 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	270
Count of miRNA genes:	150
Interacting mature miRNAs:	180
Transcripts:	ENSRNOT00000025660
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Markers in Region

AI415281

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,725,318 - 14,725,405 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,110,338 - 17,110,424	NCBI	Rnor6.0
Rnor_5.0	9	16,007,015 - 16,007,101	UniSTS	Rnor5.0
RGSC_v3.4	9	10,287,888 - 10,287,974	UniSTS	RGSC3.4
Celera	9	12,472,641 - 12,472,727	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH138565

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,707,949 - 14,708,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,092,973 - 17,093,166	NCBI	Rnor6.0
Rnor_5.0	9	15,989,650 - 15,989,843	UniSTS	Rnor5.0
RGSC_v3.4	9	10,270,522 - 10,270,715	UniSTS	RGSC3.4
Celera	9	12,455,275 - 12,455,468	UniSTS
RH 3.4 Map	9	61.6	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025660 ⟹ ENSRNOP00000025660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,209,683 - 22,223,199 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,701,468 - 14,725,751 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,086,475 - 17,110,770 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091113 ⟹ ENSRNOP00000071607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,199,676 - 22,223,199 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,701,487 - 14,725,589 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,105,151 - 17,110,616 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103212 ⟹ ENSRNOP00000076730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,217,906 - 22,223,201 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,720,328 - 14,725,751 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115530 ⟹ ENSRNOP00000086121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	22,209,683 - 22,223,172 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,701,468 - 14,725,751 (+)	Ensembl

RefSeq Acc Id:

NM_001108203 ⟹ NP_001101673

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,198,996 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,432 - 14,725,623 (+)	NCBI
Rnor_6.0	9	17,086,475 - 17,110,770 (+)	NCBI
Rnor_5.0	9	15,983,140 - 16,007,447 (+)	NCBI
RGSC_v3.4	9	10,264,023 - 10,288,320 (+)	RGD
Celera	9	12,448,777 - 12,473,073 (+)	RGD

Sequence:

show sequence

ACCCGGCCTGCCCCGCGGCAAGATGGCTACCTGAAGGAGAGGCCCCCGGCGGAAACTTGAAGAC
CCAGGGACCCCAGGGACCCCAGGGACCGGAAGAAATCACATTGCCTGCTTGGAAAGACGAGGTA
GCAGCTTGCCCCAGCCCAAACCCAGAGCGGCTCCGGAGTTGAGCTGCTCACACCCCAAGCTGTC
TGTTTATATGGAGTGCCTGGAGGGCGTCTGCCATGAGTCTGTTGCTAACACCACTAACCAGGAG
AACTGGCTGGCTGGGGAGAAGACACTAACCCTGAGCTCTTGGCTAGAGGAAGTAGAGGGGCCGT
GGGATGAGGAGAGCGGAAGGCTAACTCCAGGAGAGCAGAACAGAGAGAGGTGCCAGCGCGCAGA
CGCCCTCATCTCCAGCACTCCCCTGATCCATCCAGCCTGATCCACCAAAGTTCAGCCCTCTAAT
GGCGCAGCAGTAGGTCAGGTCCATCTGCCTGTCACCGAGCCAACACCTTCCAGGATGACCAGTG
CTGCCCCTGCTAAGAAACCTTACCGGAAGGCACCTCCCGAGCATCGAGAGCTGCGCCTGGAAAC
CCCTGTGTCCCGGCTTGAGCAACAGGAGCCCTTGACGGATGCAGAGAGGATGCAACTTTTGCAG
CAGGAGAATGAAGAACTTCGCAGACGCCTGGCCTCAGCCACCAGACGCACTGAGGCCTTGGAGC
GGGAACTGGAAATCGGGCAAGACTGCCTGGAACTGGAGTTAGGACAGAGCCGGGAAGAGCTGGA
CAAGTTCAAGGACAAATTCCGCAGGCTGCAGAACAGCTACACAGCATCCCAGCGGACCAACCAG
GAGCTCGAGGACAAGCTGCACGCACTGATCAAGAAGGCTGAGATGGACAGAAAGACGCTGGACT
GGGAGATTGTGGAGCTGACCAACAAGCTGCTGGACGCCAGGAACACCATCAACAAGCTGGAGGA
ACTCAATGAGCGGTACCGGTTGGATTGCAACCTGGCTGTGCAGCTTCTCAAGTGCAATAAGTCC
CACTTCCGGAACCACAAGTTTGCTGATCTACCCTGTGAGCTACAGGACATGGTTCGGAAACATC
TGCGCAGTGGTCAGGAGGTTGCCAGTCCCAGCCGCAGCCCTTCTTCCAGCCTGGCCCCAGGAGC
TGTGGTGCCTACCTCAGTCATTGCCCGGGTGTTGGAGAAACCCGAGTCCCTTCTGCTCAATTCA
GACCAGTCGGGCAGTGCTGGGCGCCCCTTGGCTGAGGATGTATTCGTGCATGTGGACATGAGCG
GGGGTGACCCAGCCAGCCCCCCTGCCCCGGGCAGTCCCTCTCCACAACTCAATGGGGAGTGCTG
CTCTGTGAGTATTGCAGGGGACTCCCCAGAGGAGGAGCTGCCCTTGCCAGCCTTTGACAAGTTG
AGTCCCTACCCTACCCCATCCCCACCACACCCATTGTACCCTGGTAGGAAGGTGATAGAGTTCT
CTGAGGACAAGATCCGAATCCCTCGGAACAGCCCCCTCCCCAACTGTACCTATGCCACCCGGCA
GGCCATCTCCTTGAGCCTGGTGGAGGACGGCGGTGAGCGGGCGCACTGCAGCCCGGTGCCTAGC
AGTCCTGCCTCAGCCGGAGGGTCACCCTATCACCAGCCTAGTCCAGCTCGCTCAGCACCGAGTG
CCCCAGCCAGCTCAGCCAGCTCTGAGGAGGACCTGCTGGCCAGCTGGCAGCGTGCATTTGTGGA
CCGCACCCCGCCTCCTGCGGCTGTGGTCCAGCGCACAGCCTTTGGACGAGATGCGCTGCCTGAA
CTACAGCTGCACTTCCCCCCGGGCCACTCTACAGCCCCACTACCTTCCCCACGCCATGAGCGTG
GGCTTGTGCTGCCTTCAGAACCTGACTCTGCCTTTCCTCGAGAAGAGGAAGAGGAAATGCTGAA
CCTGCCTGTCAGCCCTGAGGAAGAGCGCCAGAGCCTGCTGCCTGATAAAGAGGACACTGGGGAG
GGACCTAGCCCTTCCCACGTTGATGGCAGGGCCTGGCCTCTCTCCAGTTCCAGCCGCCCCCAGC
GCAGCCCCAAGAGAATGGGAGTACACCACCTGCACCGCAAGGACAGCCTAACGCAAGCCCAGGA
GCAGGGCACCCTGCTCAGCTAGGCCTGCCCGCCTTCCTACCACCACCTCAGGGCTACATTTGAC
CCTAAACTCTTCCTTCAGACCTGGCAGTTCTGTGAGTGGAGCCCACATCAAATCACTGACTGGT
GCCGGCTTGCCTCATGGATTTTTCTTTTCCTTTGAATACCTATTCTCCAGGGGTAACAAACAAG
TCACTTGAGCCCCAAGCTCCTTCCACCATTCATTCAGCCCAGCTGTTGCCATGGAAGTGACGGG
CAGACTTGTCAGTTTTCATCTTCTCTCCTTTCATATCTAAGAGCTCTGGTTGTTGGGGGAGGGT
GTCTTGGTGCTGCTGACCTCTATTACTCTTCCCCAGCATGAGCTGCTCTTAGGCCTGCCCCGCT
GGCCCCAGAGACAAGGGCGGACTCACTCAGGGCGCCCCTCAGCTATTCCCACCCTGTCTTCCAG
AGGGAGGGCATGACTTCAGGGGCCTCAAGCTAGACTCTAGGTGAGGCCCAGCCCCCTCTTAACC
TTGGCTCTAGACTGTTACTCCCAGATTTGGGAAGTTTTCACATAATAATGACTATTTTAAAATC
AAATAAAACTTATTTTACAGGGAAGGATTGCTTTTCTCCTTCCCACTTTAACCCCCTTGTTGCT
TTTATTGCTGAGACGGCAGCTCATGTAGAACTGACTGGCCTTGAACTCCCGGATCCACCCGTCT
CTGCCTCCAGAGTGCTGGGGTCAAAGGTGTGCGCCGCCATGCCTAGCTAAC

hide sequence

RefSeq Acc Id:

XM_006244529 ⟹ XP_006244591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,198,984 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,418 - 14,725,623 (+)	NCBI
Rnor_6.0	9	17,086,452 - 17,110,642 (+)	NCBI
Rnor_5.0	9	15,983,140 - 16,007,447 (+)	NCBI

Sequence:

show sequence

GGATTCCCGCGGCCCAGGCCCCTACCCGGCCTGCCCCGCGGCAAGATGGCTACCTGAAGGAGAG
GCCCCCGGCGGAAAGTTTGTTGTGGGATTTTTGAGTAGTCGCGCTGGAAGCTTGAAGACCCAGG
GACCCCAGGGACCCCAGGGACCGGAAGAAATCACATTGCCTGCTTGGAAAGACGAGGTAGCAGC
TTGCCCCAGCCCAAACCCAGAGCGGCAGGTCACCGAGCCAACACCTTCCAGGATGACCAGTGCT
GCCCCTGCTAAGAAACCTTACCGGAAGGCACCTCCCGAGCATCGAGAGCTGCGCCTGGAAACCC
CTGTGTCCCGGCTTGAGCAACAGGAGCCCTTGACGGATGCAGAGAGGATGCAACTTTTGCAGCA
GGAGAATGAAGAACTTCGCAGACGCCTGGCCTCAGCCACCAGACGCACTGAGGCCTTGGAGCGG
GAACTGGAAATCGGGCAAGACTGCCTGGAACTGGAGTTAGGACAGAGCCGGGAAGAGCTGGACA
AGTTCAAGGACAAATTCCGCAGGCTGCAGAACAGCTACACAGCATCCCAGCGGACCAACCAGGA
GCTCGAGGACAAGCTGCACGCACTGGCCTCTCTTAGCCACAGCTGGATTTTTGCAATCAAGAAG
GCTGAGATGGACAGAAAGACGCTGGACTGGGAGATTGTGGAGCTGACCAACAAGCTGCTGGACG
CCAGGAACACCATCAACAAGCTGGAGGAACTCAATGAGCGGTACCGGTTGGATTGCAACCTGGC
TGTGCAGCTTCTCAAGTGCAATAAGTCCCACTTCCGGAACCACAAGTTTGCTGATCTACCCTGT
GAGCTACAGGACATGGTTCGGAAACATCTGCGCAGTGGTCAGGAGGTTGCCAGTCCCAGCCGCA
GCCCTTCTTCCAGCCTGGCCCCAGGAGCTGTGGTGCCTACCTCAGTCATTGCCCGGGTGTTGGA
GAAACCCGAGTCCCTTCTGCTCAATTCAGACCAGTCGGGCAGTGCTGGGCGCCCCTTGGCTGAG
GATGTATTCGTGCATGTGGACATGAGCGGGGGTGACCCAGCCAGCCCCCCTGCCCCGGGCAGTC
CCTCTCCACAACTCAATGGGGAGTGCTGCTCTGTGAGTATTGCAGGGGACTCCCCAGAGGAGGA
GCTGCCCTTGCCAGCCTTTGACAAGTTGAGTCCCTACCCTACCCCATCCCCACCACACCCATTG
TACCCTGGTAGGAAGGTGATAGAGTTCTCTGAGGACAAGATCCGAATCCCTCGGAACAGCCCCC
TCCCCAACTGTACCTATGCCACCCGGCAGGCCATCTCCTTGAGCCTGGTGGAGGACGGCGGTGA
GCGGGCGCACTGCAGCCCGGTGCCTAGCAGTCCTGCCTCAGCCGGAGGGTCACCCTATCACCAG
CCTAGTCCAGCTCGCTCAGCACCGAGTGCCCCAGCCAGCTCAGCCAGCTCTGAGGAGGACCTGC
TGGCCAGCTGGCAGCGTGCATTTGTGGACCGCACCCCGCCTCCTGCGGCTGTGGTCCAGCGCAC
AGCCTTTGGACGAGATGCGCTGCCTGAACTACAGCTGCACTTCCCCCCGGGCCACTCTACAGCC
CCACTACCTTCCCCACGCCATGAGCGTGGGCTTGTGCTGCCTTCAGAACCTGACTCTGCCTTTC
CTCGAGAAGAGGAAGAGGAAATGCTGAACCTGCCTGTCAGCCCTGAGGAAGAGCGCCAGAGCCT
GCTGCCTGATAAAGAGGACACTGGGGAGGGACCTAGCCCTTCCCACGTTGATGGCAGGGCCTGG
CCTCTCTCCAGTTCCAGCCGCCCCCAGCGCAGCCCCAAGAGAATGGGAGTACACCACCTGCACC
GCAAGGACAGCCTAACGCAAGCCCAGGAGCAGGGCACCCTGCTCAGCTAGGCCTGCCCGCCTTC
CTACCACCACCTCAGGGCTACATTTGACCCTAAACTCTTCCTTCAGACCTGGCAGTTCTGTGAG
TGGAGCCCACATCAAATCACTGACTGGTGCCGGCTTGCCTCATGGATTTTTCTTTTCCTTTGAA
TACCTATTCTCCAGGGGTAACAAACAAGTCACTTGAGCCCCAAGCTCCTTCCACCATTCATTCA
GCCCAGCTGTTGCCATGGAAGTGACGGGCAGACTTGTCAGTTTTCATCTTCTCTCCTTTCATAT
CTAAGAGCTCTGGTTGTTGGGGGAGGGTGTCTTGGTGCTGCTGACCTCTATTACTCTTCCCCAG
CATGAGCTGCTCTTAGGCCTGCCCCGCTGGCCCCAGAGACAAGGGCGGACTCACTCAGGGCGCC
CCTCAGCTATTCCCACCCTGTCTTCCAGAGGGAGGGCATGACTTCAGGGGCCTCAAGCTAGACT
CTAGGTGAGGCCCAGCCCCCTCTTAACCTTGGCTCTAGACTGTTACTCCCAGATTTGGGAAGTT
TTCACATAATAATGACTATTTTAAAATCAAATAAAACTTATTTTACAGGGAAGGATTGCTTTTC
TCCTTCCCACTTTAA

hide sequence

RefSeq Acc Id:

XM_017596424 ⟹ XP_017451913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,065 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,473 - 14,725,623 (+)	NCBI
Rnor_6.0	9	17,087,048 - 17,110,642 (+)	NCBI

Sequence:

show sequence

CTTGAAGACCCAGGGACCCCAGGGACCCCAGGGACCGGAAGAAATCACATTGCCTGCTTGGAAA
GACGAGGTAGCAGCTTGCCCCAGCCCAAACCCAGAGCGGCTCCGGAGTTGAGCTGCTCACACCC
CAAGCTGTCTGTTTATATGGAGTGCCTGGAGGGCGTCTGCCATGAGTCTGTTGCTAACACCACT
AACCAGGAGAACTGGCTGGCTGGGGAGAAGACACTAACCCTGAGCTCTTGGCTAGAGGAAGTAG
AGGGGCCGTGGGATGAGGAGAGCGGAAGGCTAACTCCAGGAGAGCAGAACAGAGAGAGGTGCCA
GCGCGCAGACGGTCACCGAGCCAACACCTTCCAGGATGACCAGTGCTGCCCCTGCTAAGAAACC
TTACCGGAAGGCACCTCCCGAGCATCGAGAGCTGCGCCTGGAAACCCCTGTGTCCCGGCTTGAG
CAACAGGAGCCCTTGACGGATGCAGAGAGGATGCAACTTTTGCAGCAGGAGAATGAAGAACTTC
GCAGACGCCTGGCCTCAGCCACCAGACGCACTGAGGCCTTGGAGCGGGAACTGGAAATCGGGCA
AGACTGCCTGGAACTGGAGTTAGGACAGAGCCGGGAAGAGCTGGACAAGTTCAAGGACAAATTC
CGCAGGCTGCAGAACAGCTACACAGCATCCCAGCGGACCAACCAGGAGCTCGAGGACAAGCTGC
ACGCACTGGCCTCTCTTAGCCACAGCTGGATTTTTGCAATCAAGAAGGCTGAGATGGACAGAAA
GACGCTGGACTGGGAGATTGTGGAGCTGACCAACAAGCTGCTGGACGCCAGGAACACCATCAAC
AAGCTGGAGGAACTCAATGAGCGGTACCGGTTGGATTGCAACCTGGCTGTGCAGCTTCTCAAGT
GCAATAAGTCCCACTTCCGGAACCACAAGTTTGCTGATCTACCCTGTGAGCTACAGGACATGGT
TCGGAAACATCTGCGCAGTGGTCAGGAGGTTGCCAGTCCCAGCCGCAGCCCTTCTTCCAGCCTG
GCCCCAGGAGCTGTGGTGCCTACCTCAGTCATTGCCCGGGTGTTGGAGAAACCCGAGTCCCTTC
TGCTCAATTCAGACCAGTCGGGCAGTGCTGGGCGCCCCTTGGCTGAGGATGTATTCGTGCATGT
GGACATGAGCGGGGGTGACCCAGCCAGCCCCCCTGCCCCGGGCAGTCCCTCTCCACAACTCAAT
GGGGAGTGCTGCTCTGTGAGTATTGCAGGGGACTCCCCAGAGGAGGAGCTGCCCTTGCCAGCCT
TTGACAAGTTGAGTCCCTACCCTACCCCATCCCCACCACACCCATTGTACCCTGGTAGGAAGGT
GATAGAGTTCTCTGAGGACAAGATCCGAATCCCTCGGAACAGCCCCCTCCCCAACTGTACCTAT
GCCACCCGGCAGGCCATCTCCTTGAGCCTGGTGGAGGACGGCGGTGAGCGGGCGCACTGCAGCC
CGGTGCCTAGCAGTCCTGCCTCAGCCGGAGGGTCACCCTATCACCAGCCTAGTCCAGCTCGCTC
AGCACCGAGTGCCCCAGCCAGCTCAGCCAGCTCTGAGGAGGACCTGCTGGCCAGCTGGCAGCGT
GCATTTGTGGACCGCACCCCGCCTCCTGCGGCTGTGGTCCAGCGCACAGCCTTTGGACGAGATG
CGCTGCCTGAACTACAGCTGCACTTCCCCCCGGGCCACTCTACAGCCCCACTACCTTCCCCACG
CCATGAGCGTGGGCTTGTGCTGCCTTCAGAACCTGACTCTGCCTTTCCTCGAGAAGAGGAAGAG
GAAATGCTGAACCTGCCTGTCAGCCCTGAGGAAGAGCGCCAGAGCCTGCTGCCTGATAAAGAGG
ACACTGGGGAGGGACCTAGCCCTTCCCACGTTGATGGCAGGGCCTGGCCTCTCTCCAGTTCCAG
CCGCCCCCAGCGCAGCCCCAAGAGAATGGGAGTACACCACCTGCACCGCAAGGACAGCCTAACG
CAAGCCCAGGAGCAGGGCACCCTGCTCAGCTAGGCCTGCCCGCCTTCCTACCACCACCTCAGGG
CTACATTTGACCCTAAACTCTTCCTTCAGACCTGGCAGTTCTGTGAGTGGAGCCCACATCAAAT
CACTGACTGGTGCCGGCTTGCCTCATGGATTTTTCTTTTCCTTTGAATACCTATTCTCCAGGGG
TAACAAACAAGTCACTTGAGCCCCAAGCTCCTTCCACCATTCATTCAGCCCAGCTGTTGCCATG
GAAGTGACGGGCAGACTTGTCAGTTTTCATCTTCTCTCCTTTCATATCTAAGAGCTCTGGTTGT
TGGGGGAGGGTGTCTTGGTGCTGCTGACCTCTATTACTCTTCCCCAGCATGAGCTGCTCTTAGG
CCTGCCCCGCTGGCCCCAGAGACAAGGGCGGACTCACTCAGGGCGCCCCTCAGCTATTCCCACC
CTGTCTTCCAGAGGGAGGGCATGACTTCAGGGGCCTCAAGCTAGACTCTAGGTGAGGCCCAGCC
CCCTCTTAACCTTGGCTCTAGACTGTTACTCCCAGATTTGGGAAGTTTTCACATAATAATGACT
ATTTTAAAATCAAATAAAACTTATTTTACAGGGAAGGATTGCTTTTCTCCTTCCCACTTTAA

hide sequence

RefSeq Acc Id:

XM_017596425 ⟹ XP_017451914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,037 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,460 - 14,725,623 (+)	NCBI
Rnor_6.0	9	17,087,048 - 17,110,642 (+)	NCBI

Sequence:

show sequence

CTTGAAGACCCAGGGACCCCAGGGACCCCAGGGACCGGAAGAAATCACATTGCCTGCTTGGAAA
GACGAGGTAGCAGCTTGCCCCAGCCCAAACCCAGAGCGGGAGCTCTTGGCTAGAGGAAGTAGAG
GGGCCGTGGGATGAGGAGAGCGGAAGGCTAACTCCAGGAGAGCAGAACAGAGAGAGGTGCCAGC
GCGCAGACGCAGGTCACCGAGCCAACACCTTCCAGGATGACCAGTGCTGCCCCTGCTAAGAAAC
CTTACCGGAAGGCACCTCCCGAGCATCGAGAGCTGCGCCTGGAAACCCCTGTGTCCCGGCTTGA
GCAACAGGAGCCCTTGACGGATGCAGAGAGGATGCAACTTTTGCAGCAGGAGAATGAAGAACTT
CGCAGACGCCTGGCCTCAGCCACCAGACGCACTGAGGCCTTGGAGCGGGAACTGGAAATCGGGC
AAGACTGCCTGGAACTGGAGTTAGGACAGAGCCGGGAAGAGCTGGACAAGTTCAAGGACAAATT
CCGCAGGCTGCAGAACAGCTACACAGCATCCCAGCGGACCAACCAGGAGCTCGAGGACAAGCTG
CACGCACTGGCCTCTCTTAGCCACAGCTGGATTTTTGCAATCAAGAAGGCTGAGATGGACAGAA
AGACGCTGGACTGGGAGATTGTGGAGCTGACCAACAAGCTGCTGGACGCCAGGAACACCATCAA
CAAGCTGGAGGAACTCAATGAGCGGTACCGGTTGGATTGCAACCTGGCTGTGCAGCTTCTCAAG
TGCAATAAGTCCCACTTCCGGAACCACAAGTTTGCTGATCTACCCTGTGAGCTACAGGACATGG
TTCGGAAACATCTGCGCAGTGGTCAGGAGGTTGCCAGTCCCAGCCGCAGCCCTTCTTCCAGCCT
GGCCCCAGGAGCTGTGGTGCCTACCTCAGTCATTGCCCGGGTGTTGGAGAAACCCGAGTCCCTT
CTGCTCAATTCAGACCAGTCGGGCAGTGCTGGGCGCCCCTTGGCTGAGGATGTATTCGTGCATG
TGGACATGAGCGGGGGTGACCCAGCCAGCCCCCCTGCCCCGGGCAGTCCCTCTCCACAACTCAA
TGGGGAGTGCTGCTCTGTGAGTATTGCAGGGGACTCCCCAGAGGAGGAGCTGCCCTTGCCAGCC
TTTGACAAGTTGAGTCCCTACCCTACCCCATCCCCACCACACCCATTGTACCCTGGTAGGAAGG
TGATAGAGTTCTCTGAGGACAAGATCCGAATCCCTCGGAACAGCCCCCTCCCCAACTGTACCTA
TGCCACCCGGCAGGCCATCTCCTTGAGCCTGGTGGAGGACGGCGGTGAGCGGGCGCACTGCAGC
CCGGTGCCTAGCAGTCCTGCCTCAGCCGGAGGGTCACCCTATCACCAGCCTAGTCCAGCTCGCT
CAGCACCGAGTGCCCCAGCCAGCTCAGCCAGCTCTGAGGAGGACCTGCTGGCCAGCTGGCAGCG
TGCATTTGTGGACCGCACCCCGCCTCCTGCGGCTGTGGTCCAGCGCACAGCCTTTGGACGAGAT
GCGCTGCCTGAACTACAGCTGCACTTCCCCCCGGGCCACTCTACAGCCCCACTACCTTCCCCAC
GCCATGAGCGTGGGCTTGTGCTGCCTTCAGAACCTGACTCTGCCTTTCCTCGAGAAGAGGAAGA
GGAAATGCTGAACCTGCCTGTCAGCCCTGAGGAAGAGCGCCAGAGCCTGCTGCCTGATAAAGAG
GACACTGGGGAGGGACCTAGCCCTTCCCACGTTGATGGCAGGGCCTGGCCTCTCTCCAGTTCCA
GCCGCCCCCAGCGCAGCCCCAAGAGAATGGGAGTACACCACCTGCACCGCAAGGACAGCCTAAC
GCAAGCCCAGGAGCAGGGCACCCTGCTCAGCTAGGCCTGCCCGCCTTCCTACCACCACCTCAGG
GCTACATTTGACCCTAAACTCTTCCTTCAGACCTGGCAGTTCTGTGAGTGGAGCCCACATCAAA
TCACTGACTGGTGCCGGCTTGCCTCATGGATTTTTCTTTTCCTTTGAATACCTATTCTCCAGGG
GTAACAAACAAGTCACTTGAGCCCCAAGCTCCTTCCACCATTCATTCAGCCCAGCTGTTGCCAT
GGAAGTGACGGGCAGACTTGTCAGTTTTCATCTTCTCTCCTTTCATATCTAAGAGCTCTGGTTG
TTGGGGGAGGGTGTCTTGGTGCTGCTGACCTCTATTACTCTTCCCCAGCATGAGCTGCTCTTAG
GCCTGCCCCGCTGGCCCCAGAGACAAGGGCGGACTCACTCAGGGCGCCCCTCAGCTATTCCCAC
CCTGTCTTCCAGAGGGAGGGCATGACTTCAGGGGCCTCAAGCTAGACTCTAGGTGAGGCCCAGC
CCCCTCTTAACCTTGGCTCTAGACTGTTACTCCCAGATTTGGGAAGTTTTCACATAATAATGAC
TATTTTAAAATCAAATAAAACTTATTTTACAGGGAAGGATTGCTTTTCTCCTTCCCACTTTAA

hide sequence

RefSeq Acc Id:

XM_017596429 ⟹ XP_017451918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,024 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,461 - 14,725,623 (+)	NCBI
Rnor_6.0	9	17,087,048 - 17,110,642 (+)	NCBI

Sequence:

show sequence

CTTGAAGACCCAGGGACCCCAGGGACCCCAGGGACCGGAAGAAATCACATTGCCTGCTTGGAAA
GACGAGGTAGCAGCTTGCCCCAGCCCAAACCCAGAGCGGCTCCGGAGTTGAGCTGCTCACACCC
CAAGCTGTCTGTTTATATGGAGTGCCTGGAGGGCGTCTGCCATGAGTCTGTTGCTAACACCACT
AACCAGGAGAACTGGCTGGCTGGGGAGAAGACACTAACCCTGAGCTCTTGGCTAGAGGAAGTAG
AGGGGCCGTGGGATGAGGAGAGCGGAAGGCTAACTCCAGGAGAGCAGAACAGAGAGAGGTGCCA
GCGCGCAGACGCAGGTCACCGAGCCAACACCTTCCAGGATGACCAGTGCTGCCCCTGCTAAGAA
ACCTTACCGGAAGGCACCTCCCGAGCATCGAGAGCTGCGCCTGGAAACCCCTGTGTCCCGGCTT
GAGCAACAGGAGCCCTTGACGGATGCAGAGAGGATGCAACTTTTGCAGCAGGAGAATGAAGAAC
TTCGCAGACGCCTGGCCTCAGCCACCAGACGCACTGAGGCCTTGGAGCGGGAACTGGAAATCGG
GCAAGACTGCCTGGAACTGGAGTTAGGACAGAGCCGGGAAGAGCTGGACAAGTTCAAGGACAAA
TTCCGCAGGCTGCAGAACAGCTACACAGCATCCCAGCGGACCAACCAGGAGCTCGAGGACAAGC
TGCACGCACTGATCAAGAAGGCTGAGATGGACAGAAAGACGCTGGACTGGGAGATTGTGGAGCT
GACCAACAAGCTGCTGGACGCCAGGAACACCATCAACAAGCTGGAGGAACTCAATGAGCGGTAC
CGGTTGGATTGCAACCTGGCTGTGCAGCTTCTCAAGTGCAATAAGTCCCACTTCCGGAACCACA
AGTTTGCTGATCTACCCTGTGAGCTACAGGACATGGTTCGGAAACATCTGCGCAGTGGTCAGGA
GGTTGCCAGTCCCAGCCGCAGCCCTTCTTCCAGCCTGGCCCCAGGAGCTGTGGTGCCTACCTCA
GTCATTGCCCGGGTGTTGGAGAAACCCGAGTCCCTTCTGCTCAATTCAGACCAGTCGGGCAGTG
CTGGGCGCCCCTTGGCTGAGGATGTATTCGTGCATGTGGACATGAGCGGGGGTGACCCAGCCAG
CCCCCCTGCCCCGGGCAGTCCCTCTCCACAACTCAATGGGGAGTGCTGCTCTGTGAGTATTGCA
GGGGACTCCCCAGAGGAGGAGCTGCCCTTGCCAGCCTTTGACAAGTTGAGTCCCTACCCTACCC
CATCCCCACCACACCCATTGTACCCTGGTAGGAAGGTGATAGAGTTCTCTGAGGACAAGATCCG
AATCCCTCGGAACAGCCCCCTCCCCAACTGTACCTATGCCACCCGGCAGGCCATCTCCTTGAGC
CTGGTGGAGGACGGCGGTGAGCGGGCGCACTGCAGCCCGGTGCCTAGCAGTCCTGCCTCAGCCG
GAGGGTCACCCTATCACCAGCCTAGTCCAGCTCGCTCAGCACCGAGTGCCCCAGCCAGCTCAGC
CAGCTCTGAGGAGGACCTGCTGGCCAGCTGGCAGCGTGCATTTGTGGACCGCACCCCGCCTCCT
GCGGCTGTGGTCCAGCGCACAGCCTTTGGACGAGATGCGCTGCCTGAACTACAGCTGCACTTCC
CCCCGGGCCACTCTACAGCCCCACTACCTTCCCCACGCCATGAGCGTGGGCTTGTGCTGCCTTC
AGAACCTGACTCTGCCTTTCCTCGAGAAGAGGAAGAGGAAATGCTGAACCTGCCTGTCAGCCCT
GAGGAAGAGCGCCAGAGCCTGCTGCCTGATAAAGAGGACACTGGGGAGGGACCTAGCCCTTCCC
ACGTTGATGGCAGGGCCTGGCCTCTCTCCAGTTCCAGCCGCCCCCAGCGCAGCCCCAAGAGAAT
GGGAGTACACCACCTGCACCGCAAGGACAGCCTAACGCAAGCCCAGGAGCAGGGCACCCTGCTC
AGCTAGGCCTGCCCGCCTTCCTACCACCACCTCAGGGCTACATTTGACCCTAAACTCTTCCTTC
AGACCTGGCAGTTCTGTGAGTGGAGCCCACATCAAATCACTGACTGGTGCCGGCTTGCCTCATG
GATTTTTCTTTTCCTTTGAATACCTATTCTCCAGGGGTAACAAACAAGTCACTTGAGCCCCAAG
CTCCTTCCACCATTCATTCAGCCCAGCTGTTGCCATGGAAGTGACGGGCAGACTTGTCAGTTTT
CATCTTCTCTCCTTTCATATCTAAGAGCTCTGGTTGTTGGGGGAGGGTGTCTTGGTGCTGCTGA
CCTCTATTACTCTTCCCCAGCATGAGCTGCTCTTAGGCCTGCCCCGCTGGCCCCAGAGACAAGG
GCGGACTCACTCAGGGCGCCCCTCAGCTATTCCCACCCTGTCTTCCAGAGGGAGGGCATGACTT
CAGGGGCCTCAAGCTAGACTCTAGGTGAGGCCCAGCCCCCTCTTAACCTTGGCTCTAGACTGTT
ACTCCCAGATTTGGGAAGTTTTCACATAATAATGACTATTTTAAAATCAAATAAAACTTATTTT
ACAGGGAAGGATTGCTTTTCTCCTTCCCACTTTAA

hide sequence

RefSeq Acc Id:

XM_039083522 ⟹ XP_038939450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,035 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,460 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_039083523 ⟹ XP_038939451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,063 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,478 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_039083524 ⟹ XP_038939452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,033 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,460 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_039083525 ⟹ XP_038939453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,068 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,483 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_039083529 ⟹ XP_038939457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,044 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,701,418 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_039083530 ⟹ XP_038939458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,218,439 - 22,223,201 (+)	NCBI
mRatBN7.2	9	14,720,330 - 14,725,623 (+)	NCBI

RefSeq Acc Id:

XM_063267096 ⟹ XP_063123166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,003 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267097 ⟹ XP_063123167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,024 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267098 ⟹ XP_063123168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,054 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267099 ⟹ XP_063123169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,035 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267100 ⟹ XP_063123170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,034 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267102 ⟹ XP_063123172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,024 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267103 ⟹ XP_063123173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,024 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267104 ⟹ XP_063123174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,024 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267105 ⟹ XP_063123175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,041 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267106 ⟹ XP_063123176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,037 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267107 ⟹ XP_063123177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,037 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267108 ⟹ XP_063123178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,037 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267109 ⟹ XP_063123179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,041 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267110 ⟹ XP_063123180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,017 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267111 ⟹ XP_063123181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,053 - 22,223,201 (+)	NCBI

RefSeq Acc Id:

XM_063267112 ⟹ XP_063123182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,199,041 - 22,223,201 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101673	(Get FASTA)	NCBI Sequence Viewer
	XP_006244591	(Get FASTA)	NCBI Sequence Viewer
	XP_017451913	(Get FASTA)	NCBI Sequence Viewer
	XP_017451914	(Get FASTA)	NCBI Sequence Viewer
	XP_017451918	(Get FASTA)	NCBI Sequence Viewer
	XP_038939450	(Get FASTA)	NCBI Sequence Viewer
	XP_038939451	(Get FASTA)	NCBI Sequence Viewer
	XP_038939452	(Get FASTA)	NCBI Sequence Viewer
	XP_038939453	(Get FASTA)	NCBI Sequence Viewer
	XP_038939457	(Get FASTA)	NCBI Sequence Viewer
	XP_038939458	(Get FASTA)	NCBI Sequence Viewer
	XP_063123166	(Get FASTA)	NCBI Sequence Viewer
	XP_063123167	(Get FASTA)	NCBI Sequence Viewer
	XP_063123168	(Get FASTA)	NCBI Sequence Viewer
	XP_063123169	(Get FASTA)	NCBI Sequence Viewer
	XP_063123170	(Get FASTA)	NCBI Sequence Viewer
	XP_063123172	(Get FASTA)	NCBI Sequence Viewer
	XP_063123173	(Get FASTA)	NCBI Sequence Viewer
	XP_063123174	(Get FASTA)	NCBI Sequence Viewer
	XP_063123175	(Get FASTA)	NCBI Sequence Viewer
	XP_063123176	(Get FASTA)	NCBI Sequence Viewer
	XP_063123177	(Get FASTA)	NCBI Sequence Viewer
	XP_063123178	(Get FASTA)	NCBI Sequence Viewer
	XP_063123179	(Get FASTA)	NCBI Sequence Viewer
	XP_063123180	(Get FASTA)	NCBI Sequence Viewer
	XP_063123181	(Get FASTA)	NCBI Sequence Viewer
	XP_063123182	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18809	(Get FASTA)	NCBI Sequence Viewer
	EDM18810	(Get FASTA)	NCBI Sequence Viewer
	EDM18811	(Get FASTA)	NCBI Sequence Viewer
	EDM18812	(Get FASTA)	NCBI Sequence Viewer
	EDM18813	(Get FASTA)	NCBI Sequence Viewer
	EDM18814	(Get FASTA)	NCBI Sequence Viewer
	EDM18815	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025660
	ENSRNOP00000025660.3
	ENSRNOP00000071607.3
	ENSRNOP00000076730.1
	ENSRNOP00000086121
	ENSRNOP00000086121.1

RefSeq Acc Id:

NP_001101673 ⟸ NM_001108203

- UniProtKB:

D3ZU31 (UniProtKB/TrEMBL), A6JIR8 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTE
ALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALIKKAEMDRK
TLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMV
RKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGRPLAEDVFVHV
DMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKV
IEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGSPYHQPSPARS
APSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPGHSTAPLPSPR
HERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVDGRAWPLSSSS
RPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS

hide sequence

RefSeq Acc Id:	XP_006244591 ⟸ XM_006244529
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0W5 (UniProtKB/TrEMBL), A0A8I6GDP5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTE ALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALASLSHSWIF AIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFA DLPCELQDMVRKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGR PLAEDVFVHVDMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSP PHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGS PYHQPSPARSAPSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPG HSTAPLPSPRHERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVD GRAWPLSSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS hide sequence

RefSeq Acc Id:	XP_017451918 ⟸ XM_017596429
- Peptide Label:	isoform X2
- UniProtKB:	D3ZU31 (UniProtKB/TrEMBL), A6JIR8 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTE ALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALIKKAEMDRK TLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMV RKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGRPLAEDVFVHV DMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKV IEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGSPYHQPSPARS APSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPGHSTAPLPSPR HERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVDGRAWPLSSSS RPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS hide sequence

RefSeq Acc Id:	XP_017451913 ⟸ XM_017596424
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0W5 (UniProtKB/TrEMBL), A0A8I6GDP5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTE ALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALASLSHSWIF AIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFA DLPCELQDMVRKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGR PLAEDVFVHVDMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSP PHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGS PYHQPSPARSAPSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPG HSTAPLPSPRHERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVD GRAWPLSSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS hide sequence

RefSeq Acc Id:	XP_017451914 ⟸ XM_017596425
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0W5 (UniProtKB/TrEMBL), A0A8I6GDP5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTE ALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALASLSHSWIF AIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFA DLPCELQDMVRKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGR PLAEDVFVHVDMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSP PHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGS PYHQPSPARSAPSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPG HSTAPLPSPRHERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVD GRAWPLSSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS hide sequence

Ensembl Acc Id:

ENSRNOP00000071607 ⟸ ENSRNOT00000091113

Ensembl Acc Id:

ENSRNOP00000025660 ⟸ ENSRNOT00000025660

RefSeq Acc Id:	XP_038939457 ⟸ XM_039083529
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939450 ⟸ XM_039083522
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939452 ⟸ XM_039083524
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939451 ⟸ XM_039083523
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939453 ⟸ XM_039083525
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939458 ⟸ XM_039083530
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000086121 ⟸ ENSRNOT00000115530

Ensembl Acc Id:

ENSRNOP00000076730 ⟸ ENSRNOT00000103212

RefSeq Acc Id:	XP_063123166 ⟸ XM_063267096
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123180 ⟸ XM_063267110
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123167 ⟸ XM_063267097
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123172 ⟸ XM_063267102
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123173 ⟸ XM_063267103
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123174 ⟸ XM_063267104
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123170 ⟸ XM_063267100
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123169 ⟸ XM_063267099
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123177 ⟸ XM_063267107
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123178 ⟸ XM_063267108
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123176 ⟸ XM_063267106
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123175 ⟸ XM_063267105
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123179 ⟸ XM_063267109
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123182 ⟸ XM_063267112
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123181 ⟸ XM_063267111
- Peptide Label:	isoform X2
- UniProtKB:	A6JIR8 (UniProtKB/TrEMBL), D3ZU31 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123168 ⟸ XM_063267098
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GDP5 (UniProtKB/TrEMBL), A0A0G2K0W5 (UniProtKB/TrEMBL)

Protein Domains

Tight junction-associated protein

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0W5-F1-model_v2	AlphaFold	A0A0G2K0W5	1-553	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696526

Promoter ID:

EPDNEW_R7050

Type:

multiple initiation site

Name:

Tjap1_1

Description:

tight junction associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,086,475 - 17,086,535	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308708	AgrOrtholog
BioCyc Gene	G2FUF-28213	BioCyc
Ensembl Genes	ENSRNOG00000018980	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025660	ENTREZGENE
	ENSRNOT00000025660.7	UniProtKB/TrEMBL
	ENSRNOT00000091113.3	UniProtKB/TrEMBL
	ENSRNOT00000103212.2	UniProtKB/TrEMBL
	ENSRNOT00000115530	ENTREZGENE
	ENSRNOT00000115530.2	UniProtKB/TrEMBL
InterPro	Tjap1/BEGAIN	UniProtKB/TrEMBL
	Tjap1_dom	UniProtKB/TrEMBL
KEGG Report	rno:316233	UniProtKB/TrEMBL
NCBI Gene	316233	ENTREZGENE
PANTHER	PTHR28664	UniProtKB/TrEMBL
	PTHR28664:SF3	UniProtKB/TrEMBL
Pfam	Pilt	UniProtKB/TrEMBL
PhenoGen	Tjap1	PhenoGen
RatGTEx	ENSRNOG00000018980	RatGTEx
UniProt	A0A0G2K0W5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y0B5_RAT	UniProtKB/TrEMBL
	A0A8I6GDP5	ENTREZGENE, UniProtKB/TrEMBL
	A6JIR8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZU31	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tjap1	tight junction associated protein 1	Tjap1_predicted	tight junction associated protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tjap1_predicted	tight junction associated protein 1 (predicted)	Tjp4_predicted	tight junction protein 4 (peripheral) (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Tjp4_predicted	tight junction protein 4 (peripheral) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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