Prkag3 (protein kinase AMP-activated non-catalytic subunit gamma 3) - Rat Genome Database

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Gene: Prkag3 (protein kinase AMP-activated non-catalytic subunit gamma 3) Rattus norvegicus
Analyze
Symbol: Prkag3
Name: protein kinase AMP-activated non-catalytic subunit gamma 3
RGD ID: 1308698
Description: Contributes to AMP-activated protein kinase activity. Predicted to be involved in cellular response to glucose starvation; regulation of carbohydrate metabolic process; and regulation of carbon utilization. Predicted to act upstream of or within negative regulation of glycogen biosynthetic process and response to muscle activity involved in regulation of muscle adaptation. Part of nucleotide-activated protein kinase complex. Orthologous to human PRKAG3 (protein kinase AMP-activated non-catalytic subunit gamma 3); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; hypertrophic cardiomyopathy pathway; insulin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5'-AMP-activated protein kinase subunit gamma-3; AMP-activated protein kinase gamma 3 subunit; Ampkg3; protein kinase, AMP-activated, gamma 3 non-catalytic subunit; protein kinase, AMP-activated, gamma 3 non-catatlytic subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,744,385 - 83,753,629 (-)NCBIGRCr8
mRatBN7.2976,295,715 - 76,304,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,295,715 - 76,304,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,740,945 - 84,750,169 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,869,884 - 89,879,109 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,256,055 - 88,265,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,999,368 - 82,008,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,999,376 - 82,008,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,761,758 - 81,771,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,069,811 - 74,079,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,218,387 - 74,226,036 (-)NCBI
Celera973,868,165 - 73,877,380 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Characterization of AMP-activated protein kinase gamma-subunit isoforms and their role in AMP binding. Cheung PC, etal., Biochem J. 2000 Mar 15;346 Pt 3:659-69.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. The AMP-activated protein kinase pathway--new players upstream and downstream. Hardie DG J Cell Sci. 2004 Nov 1;117(Pt 23):5479-87.
5. Management of cellular energy by the AMP-activated protein kinase system. Hardie DG, etal., FEBS Lett. 2003 Jul 3;546(1):113-20.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14559719   PMID:15857891   PMID:22664934   PMID:26399639  


Genomics

Comparative Map Data
Prkag3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,744,385 - 83,753,629 (-)NCBIGRCr8
mRatBN7.2976,295,715 - 76,304,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,295,715 - 76,304,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,740,945 - 84,750,169 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,869,884 - 89,879,109 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,256,055 - 88,265,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,999,368 - 82,008,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,999,376 - 82,008,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,761,758 - 81,771,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,069,811 - 74,079,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,218,387 - 74,226,036 (-)NCBI
Celera973,868,165 - 73,877,380 (-)NCBICelera
Cytogenetic Map9q33NCBI
PRKAG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,822,308 - 218,831,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,822,308 - 218,832,086 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,687,031 - 219,696,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,395,350 - 219,404,756 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,512,610 - 219,522,017NCBI
Celera2213,454,874 - 213,464,282 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,540,231 - 211,549,639 (-)NCBIHuRef
CHM1_12219,694,004 - 219,703,412 (-)NCBICHM1_1
T2T-CHM13v2.02219,308,866 - 219,318,363 (-)NCBIT2T-CHM13v2.0
Prkag3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,778,062 - 74,788,623 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,778,081 - 74,788,380 (-)EnsemblGRCm39 Ensembl
GRCm38174,738,922 - 74,749,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,738,922 - 74,749,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37174,785,496 - 74,795,529 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,673,847 - 74,682,069 (-)NCBIMGSCv36mm8
Celera175,293,936 - 75,303,959 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Prkag3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,584,412 - 14,595,369 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,584,405 - 14,594,112 (+)NCBIChiLan1.0ChiLan1.0
PRKAG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,456,805 - 121,466,253 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,471,685 - 121,481,194 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,085,299 - 106,139,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,679,831 - 224,687,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,679,831 - 224,687,705 (-)Ensemblpanpan1.1panPan2
PRKAG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,405,794 - 25,414,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,406,190 - 25,414,961 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,224,582 - 26,234,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,420,002 - 25,430,360 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,420,003 - 25,429,619 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,324,688 - 25,335,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,259,422 - 25,269,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,280,219 - 25,290,581 (-)NCBIUU_Cfam_GSD_1.0
Prkag3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,912,850 - 174,925,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,259,105 - 1,266,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,258,678 - 1,266,925 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRKAG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,855,201 - 120,866,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,859,486 - 120,866,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,800,767 - 133,806,881 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap15qNCBI
PRKAG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,717,144 - 104,732,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,718,680 - 104,730,005 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,669,341 - 94,678,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prkag3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,184,801 - 6,192,654 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,184,970 - 6,196,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:316
Count of miRNA genes:189
Interacting mature miRNAs:215
Transcripts:ENSRNOT00000023365
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)98216882386720295Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
stSG625835  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,298,342 - 76,299,603 (+)MAPPERmRatBN7.2
Rnor_6.0982,002,004 - 82,003,264NCBIRnor6.0
Rnor_5.0981,764,386 - 81,765,642UniSTSRnor5.0
RGSC_v3.4974,072,439 - 74,073,699UniSTSRGSC3.4
Celera973,870,793 - 73,872,053UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 41 79 78 52 19 52 6 187 91 21 27 50 26

Sequence


Ensembl Acc Id: ENSRNOT00000023365   ⟹   ENSRNOP00000023365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,295,715 - 76,304,959 (-)Ensembl
Rnor_6.0 Ensembl981,999,376 - 82,008,620 (-)Ensembl
RefSeq Acc Id: NM_001106921   ⟹   NP_001100391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,744,385 - 83,753,629 (-)NCBI
mRatBN7.2976,295,715 - 76,304,959 (-)NCBI
Rnor_6.0981,999,376 - 82,008,620 (-)NCBI
Rnor_5.0981,761,758 - 81,771,204 (-)NCBI
RGSC_v3.4974,069,811 - 74,079,055 (-)RGD
Celera973,868,165 - 73,877,380 (-)RGD
Sequence:
RefSeq Acc Id: XM_039083362   ⟹   XP_038939290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,744,472 - 83,753,624 (-)NCBI
mRatBN7.2976,295,802 - 76,304,954 (-)NCBI
RefSeq Acc Id: XM_039083363   ⟹   XP_038939291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,744,472 - 83,753,515 (-)NCBI
mRatBN7.2976,295,802 - 76,304,838 (-)NCBI
RefSeq Acc Id: XM_039083364   ⟹   XP_038939292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,744,472 - 83,751,138 (-)NCBI
mRatBN7.2976,295,802 - 76,302,395 (-)NCBI
RefSeq Acc Id: XM_063266978   ⟹   XP_063123048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,744,472 - 83,753,624 (-)NCBI
RefSeq Acc Id: NP_001100391   ⟸   NM_001106921
- Sequence:
Ensembl Acc Id: ENSRNOP00000023365   ⟸   ENSRNOT00000023365
RefSeq Acc Id: XP_038939290   ⟸   XM_039083362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939291   ⟸   XM_039083363
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939292   ⟸   XM_039083364
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123048   ⟸   XM_063266978
- Peptide Label: isoform X2
Protein Domains
CBS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7E4-F1-model_v2 AlphaFold D4A7E4 1-493 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696760
Promoter ID:EPDNEW_R7284
Type:single initiation site
Name:Prkag3_1
Description:protein kinase AMP-activated non-catalytic subunit gamma 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0982,008,544 - 82,008,604EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308698 AgrOrtholog
BioCyc Gene G2FUF-27118 BioCyc
Ensembl Genes ENSRNOG00000017248 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023365.6 UniProtKB/TrEMBL
Gene3D-CATH 3.10.580.10 UniProtKB/TrEMBL
InterPro AMPK_gamma/SDS23_families UniProtKB/TrEMBL
  CBS_dom_sf UniProtKB/TrEMBL
  Cysta_beta_synth_core UniProtKB/TrEMBL
KEGG Report rno:301518 UniProtKB/TrEMBL
NCBI Gene 301518 ENTREZGENE
PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT UniProtKB/TrEMBL
  PTHR13780:SF31 UniProtKB/TrEMBL
Pfam CBS UniProtKB/TrEMBL
PhenoGen Prkag3 PhenoGen
PROSITE CBS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017248 RatGTEx
SMART CBS UniProtKB/TrEMBL
Superfamily-SCOP SSF54631 UniProtKB/TrEMBL
UniProt A6JVW1 ENTREZGENE, UniProtKB/TrEMBL
  D4A7E4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Prkag3  protein kinase AMP-activated non-catalytic subunit gamma 3  Prkag3  protein kinase, AMP-activated, gamma 3 non-catalytic subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-24 Prkag3  protein kinase, AMP-activated, gamma 3 non-catalytic subunit  Prkag3  protein kinase, AMP-activated, gamma 3 non-catatlytic subunit   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Prkag3  protein kinase, AMP-activated, gamma 3 non-catatlytic subunit   Prkag3_predicted  protein kinase, AMP-activated, gamma 3 non-catatlytic subunit (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Prkag3_predicted  protein kinase, AMP-activated, gamma 3 non-catatlytic subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED