Abtb3 (ankyrin repeat and BTB domain containing 3) - Rat Genome Database

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Gene: Abtb3 (ankyrin repeat and BTB domain containing 3) Rattus norvegicus
Analyze
Symbol: Abtb3
Name: ankyrin repeat and BTB domain containing 3
RGD ID: 1308647
Description: Predicted to enable PDZ domain binding activity. Predicted to act upstream of or within exploration behavior; glutamatergic synaptic transmission; and protein stabilization. Predicted to be located in glutamatergic synapse. Orthologous to human ABTB3 (ankyrin repeat and BTB domain containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and BTB/POZ domain-containing protein 3; ankyrin repeat and BTB/POZ domain-containing protein BTBD11; BTB (POZ) domain containing 11; BTB domain containing 11; Btbd11; LOC314675
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,922,883 - 20,199,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl719,923,814 - 20,198,110 (-)EnsemblGRCr8
mRatBN7.2718,035,151 - 18,310,718 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl718,036,083 - 18,310,834 (-)EnsemblmRatBN7.2
Rnor_6.0724,041,194 - 24,314,418 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,043,126 - 24,313,885 (-)Ensemblrn6Rnor6.0
Rnor_5.0724,192,154 - 24,465,909 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4720,173,338 - 20,289,415 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera715,267,181 - 15,541,239 (-)NCBICelera
RGSC_v3.1720,196,147 - 20,322,938 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
chenodeoxycholic acid  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
flutamide  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glyphosate  (EXP)
GSK-J4  (ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
morphine  (ISO)
nicotine  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
pirinixic acid  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
Sunset Yellow FCF  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
glutamatergic synapse  (IEA,ISO)
membrane  (IEA)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23390484  


Genomics

Comparative Map Data
Abtb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,922,883 - 20,199,740 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl719,923,814 - 20,198,110 (-)EnsemblGRCr8
mRatBN7.2718,035,151 - 18,310,718 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl718,036,083 - 18,310,834 (-)EnsemblmRatBN7.2
Rnor_6.0724,041,194 - 24,314,418 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,043,126 - 24,313,885 (-)Ensemblrn6Rnor6.0
Rnor_5.0724,192,154 - 24,465,909 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4720,173,338 - 20,289,415 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera715,267,181 - 15,541,239 (-)NCBICelera
RGSC_v3.1720,196,147 - 20,322,938 (-)NCBI
Cytogenetic Map7q13NCBI
ABTB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812107,318,434 - 107,659,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12107,318,421 - 107,659,642 (+)Ensemblhg38GRCh38
GRCh3712107,712,211 - 108,053,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612106,236,327 - 106,577,549 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3412106,531,075 - 106,555,862NCBI
Celera12107,377,745 - 107,718,969 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12104,772,631 - 105,113,867 (+)NCBIHuRef
CHM1_112107,677,696 - 108,019,374 (+)NCBICHM1_1
T2T-CHM13v2.012107,282,040 - 107,623,123 (+)NCBIT2T-CHM13v2.0
Abtb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391085,220,835 - 85,496,156 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1085,222,678 - 85,496,156 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381085,384,971 - 85,660,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1085,386,814 - 85,660,292 (+)Ensemblmm10GRCm38
MGSCv371084,849,559 - 85,123,037 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361084,817,618 - 85,090,091 (+)NCBIMGSCv36mm8
Celera1087,363,926 - 87,643,750 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.65NCBI
Abtb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,123,577 - 41,301,029 (+)Ensembl
ChiLan1.0NW_00495540541,123,136 - 41,299,803 (+)NCBIChiLan1.0ChiLan1.0
ABTB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210115,376,617 - 115,718,120 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112115,373,024 - 115,714,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012104,888,102 - 105,229,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112108,281,754 - 108,626,189 (+)NCBIPanPan1.1PanPan1.1panPan2
ABTB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11031,168,809 - 31,479,343 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1031,169,868 - 31,478,420 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1031,153,632 - 31,463,025 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01032,013,376 - 32,323,765 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1032,013,376 - 32,323,765 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11031,752,707 - 32,062,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01032,042,055 - 32,353,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01032,228,207 - 32,538,316 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Abtb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494514,469,952 - 14,726,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364927,482,250 - 7,736,269 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364927,480,372 - 7,514,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABTB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl512,754,539 - 13,069,527 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1512,754,535 - 13,071,050 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2512,647,039 - 12,922,621 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABTB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111102,535,469 - 102,882,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11102,800,591 - 102,882,388 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037142,188,082 - 142,529,581 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abtb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247502,136,197 - 2,304,085 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247502,136,668 - 2,304,073 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Abtb3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11162,774,546 - 162,891,050 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Abtb3
3444 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:557
Count of miRNA genes:122
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000008152, ENSRNOT00000008596, ENSRNOT00000044331, ENSRNOT00000072370
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
D7Rat35  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8720,057,232 - 20,057,375 (+)Marker Load Pipeline
mRatBN7.2718,169,505 - 18,169,648 (+)MAPPERmRatBN7.2
Rnor_6.0724,175,337 - 24,175,479NCBIRnor6.0
Rnor_5.0724,326,613 - 24,326,755UniSTSRnor5.0
RGSC_v3.4720,307,479 - 20,307,622RGDRGSC3.4
RGSC_v3.4720,307,480 - 20,307,622UniSTSRGSC3.4
Celera715,401,260 - 15,401,400UniSTS
RGSC_v3.1720,322,993 - 20,323,136RGD
RH 2.0 Map774.9RGD
SHRSP x BN Map76.83RGD
FHH x ACI Map72.9199RGD
Cytogenetic Map7q13UniSTS
D7Rat155  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8720,155,232 - 20,155,440 (+)Marker Load Pipeline
Celera715,496,921 - 15,497,120UniSTS
SHRSP x BN Map78.1599RGD
SHRSP x BN Map78.1599UniSTS
Cytogenetic Map7q13UniSTS
AU049755  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8720,173,287 - 20,173,586 (+)Marker Load Pipeline
mRatBN7.2718,285,574 - 18,285,873 (+)MAPPERmRatBN7.2
Rnor_6.0724,289,303 - 24,289,601NCBIRnor6.0
Rnor_5.0724,441,051 - 24,441,349UniSTSRnor5.0
Celera715,516,106 - 15,516,404UniSTS
Cytogenetic Map7q13UniSTS
RH140753  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2718,035,195 - 18,035,317 (+)MAPPERmRatBN7.2
Rnor_6.0724,041,239 - 24,041,360NCBIRnor6.0
Rnor_5.0724,192,199 - 24,192,320UniSTSRnor5.0
RGSC_v3.4720,173,382 - 20,173,503UniSTSRGSC3.4
Celera715,267,226 - 15,267,347UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 85 59 6 349 185 11 141 81 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000008596   ⟹   ENSRNOP00000008596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl719,923,814 - 20,198,110 (-)Ensembl
mRatBN7.2 Ensembl718,036,083 - 18,310,834 (-)Ensembl
Rnor_6.0 Ensembl724,043,126 - 24,102,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000044331   ⟹   ENSRNOP00000045550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl719,923,814 - 20,198,110 (-)Ensembl
mRatBN7.2 Ensembl718,036,083 - 18,310,834 (-)Ensembl
Rnor_6.0 Ensembl724,043,126 - 24,313,885 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103143   ⟹   ENSRNOP00000093255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl719,923,814 - 20,198,110 (-)Ensembl
mRatBN7.2 Ensembl718,036,083 - 18,310,834 (-)Ensembl
RefSeq Acc Id: XM_039080069   ⟹   XP_038935997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,199,740 (-)NCBI
mRatBN7.2718,035,151 - 18,310,716 (-)NCBI
RefSeq Acc Id: XM_039080070   ⟹   XP_038935998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,199,740 (-)NCBI
mRatBN7.2718,035,151 - 18,310,718 (-)NCBI
RefSeq Acc Id: XM_039080071   ⟹   XP_038935999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 19,984,704 (-)NCBI
mRatBN7.2718,035,151 - 18,097,288 (-)NCBI
RefSeq Acc Id: XM_063264583   ⟹   XP_063120653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,199,740 (-)NCBI
RefSeq Acc Id: XM_063264584   ⟹   XP_063120654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,199,740 (-)NCBI
RefSeq Acc Id: XM_063264585   ⟹   XP_063120655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,116,823 (-)NCBI
RefSeq Acc Id: XM_063264587   ⟹   XP_063120657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 20,116,827 (-)NCBI
RefSeq Acc Id: XM_063264588   ⟹   XP_063120658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,922,883 - 19,984,705 (-)NCBI
Ensembl Acc Id: ENSRNOP00000008596   ⟸   ENSRNOT00000008596
Ensembl Acc Id: ENSRNOP00000045550   ⟸   ENSRNOT00000044331
RefSeq Acc Id: XP_038935998   ⟸   XM_039080070
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935997   ⟸   XM_039080069
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935999   ⟸   XM_039080071
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000093255   ⟸   ENSRNOT00000103143
RefSeq Acc Id: XP_063120654   ⟸   XM_063264584
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063120653   ⟸   XM_063264583
- Peptide Label: isoform X2
- UniProtKB: D3Z9Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120657   ⟸   XM_063264587
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063120655   ⟸   XM_063264585
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063120658   ⟸   XM_063264588
- Peptide Label: isoform X8
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC89-F1-model_v2 AlphaFold D4AC89 1-1109 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308647 AgrOrtholog
BioCyc Gene G2FUF-34633 BioCyc
Ensembl Genes ENSRNOG00000005758 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008596 ENTREZGENE
  ENSRNOT00000008596.9 UniProtKB/TrEMBL
  ENSRNOT00000044331 ENTREZGENE
  ENSRNOT00000044331.8 UniProtKB/TrEMBL
  ENSRNOT00000103143.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro Ankyrin-BTB/POZ_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  BTBD11_BACK UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene 314675 ENTREZGENE
PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING UniProtKB/TrEMBL
  ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN BTBD11 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PhenoGen Abtb3 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005758 RatGTEx
SMART ANK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8I6AJE8 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9Y5 ENTREZGENE, UniProtKB/TrEMBL
  D4AC89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-27 Abtb3  ankyrin repeat and BTB domain containing 3  Btbd11  BTB domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-17 Btbd11  BTB domain containing 11  Btbd11  BTB (POZ) domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Btbd11  BTB (POZ) domain containing 11   Btbd11_predicted  BTB (POZ) domain containing 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Btbd11_predicted  BTB (POZ) domain containing 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED