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Gene: Zfp287 (zinc finger protein 287) Rattus norvegicus

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Symbol:

Zfp287

Name:

zinc finger protein 287

RGD ID:

1308617

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cytokine production. Predicted to be active in nucleus. Orthologous to human ZNF287 (zinc finger protein 287); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303212; Znf287

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF287 (zinc finger protein 287)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf287 (zinc finger protein 287)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TFG (trafficking from ER to golgi regulator)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF287 (zinc finger protein 287)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp287 (zinc finger protein 287)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	crol	Alliance	DIOPT (OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100489533	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC101731242	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC101731242	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	47,896,517 - 47,914,860 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	47,896,517 - 47,914,950 (-)	Ensembl				GRCr8
mRatBN7.2	10	47,395,650 - 47,415,610 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	47,397,285 - 47,439,755 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	52,100,517 - 52,117,441 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,591,065 - 51,607,989 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	47,094,485 - 47,111,406 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	49,131,764 - 49,150,930 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	49,135,277 - 49,149,479 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	48,913,568 - 48,956,344 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	48,896,296 - 48,913,856 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	46,642,693 - 46,659,522 (-)	NCBI		Celera
RGSC_v3.1	10	48,912,968 - 48,927,504 (-)	NCBI
Cytogenetic Map	10	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

curcumin (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

entinostat (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

iron dichloride (ISO)

maneb (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chloride (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

sodium arsenite (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IBA)

positive regulation of metabolic process (IEA)

regulation of DNA-templated transcription (IEA)

regulation of multicellular organismal process (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11093124

Genomics

Comparative Map Data

Zfp287
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	47,896,517 - 47,914,860 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	47,896,517 - 47,914,950 (-)	Ensembl				GRCr8
mRatBN7.2	10	47,395,650 - 47,415,610 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	47,397,285 - 47,439,755 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	52,100,517 - 52,117,441 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,591,065 - 51,607,989 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	47,094,485 - 47,111,406 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	49,131,764 - 49,150,930 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	49,135,277 - 49,149,479 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	48,913,568 - 48,956,344 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	48,896,296 - 48,913,856 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	46,642,693 - 46,659,522 (-)	NCBI		Celera
RGSC_v3.1	10	48,912,968 - 48,927,504 (-)	NCBI
Cytogenetic Map	10	q23	NCBI

ZNF287
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	16,546,954 - 16,569,212 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	16,546,954 - 16,569,218 (-)	Ensembl			hg38	GRCh38
GRCh37	17	16,450,268 - 16,472,526 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	16,395,426 - 16,413,189 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	16,395,434 - 16,413,189	NCBI
Celera	17	16,356,542 - 16,375,435 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	16,320,449 - 16,339,388 (-)	NCBI		HuRef
CHM1_1	17	16,463,221 - 16,482,114 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	16,449,237 - 16,471,499 (-)	NCBI		T2T-CHM13v2.0

Zfp287
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,583,270 - 62,622,749 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	62,591,182 - 62,622,731 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	62,692,444 - 62,731,912 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	62,700,356 - 62,731,905 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	62,524,988 - 62,542,595 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	62,529,482 - 62,545,288 (-)	NCBI		MGSCv36	mm8
Celera	11	69,631,800 - 69,649,417 (-)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	38.62	NCBI

Znf287
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	1,880,859 - 1,896,251 (-)	Ensembl
ChiLan1.0	NW_004955467	1,878,543 - 1,897,735 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF287
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	56,055,015 - 56,074,926 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	60,866,640 - 60,887,340 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	35,464,681 - 35,485,619 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	110,753,063 - 110,776,732 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	110,756,432 - 110,776,732 (-)	Ensembl			panPan2	panpan1.1

ZNF287
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	39,384,803 - 39,405,850 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	39,385,442 - 39,402,014 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	39,529,431 - 39,550,480 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	39,493,132 - 39,514,188 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	39,493,142 - 39,514,178 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	39,464,907 - 39,485,934 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	39,410,431 - 39,431,472 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	39,602,257 - 39,623,303 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf287
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	59,700,608 - 59,719,200 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936821	94,524 - 109,341 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936821	93,014 - 111,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF287
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	59,038,774 - 59,053,204 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	59,038,737 - 59,056,979 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,165,579 - 62,177,611 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF287
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	15,087,895 - 15,107,194 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	5,868,357 - 5,886,771 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf287
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624877	3,878,910 - 3,899,394 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla_female_1.0 Ensembl	NW_004624877	3,830,023 - 3,841,257 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624877	3,817,976 - 3,902,045 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp287
159 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	389
Count of miRNA genes:	213
Interacting mature miRNAs:	273
Transcripts:	ENSRNOT00000004291
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	47489017	69161158	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH141502

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	47,398,176 - 47,398,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	49,133,119 - 49,133,314	NCBI	Rnor6.0
Rnor_5.0	10	48,914,460 - 48,914,655	UniSTS	Rnor5.0
RGSC_v3.4	10	48,897,188 - 48,897,383	UniSTS	RGSC3.4
Celera	10	46,643,585 - 46,643,780	UniSTS
RH 3.4 Map	10	549.7	UniSTS
Cytogenetic Map	10	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004291 ⟹ ENSRNOP00000004291

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	47,896,517 - 47,914,950 (-)	Ensembl
mRatBN7.2 Ensembl	10	47,397,285 - 47,439,755 (-)	Ensembl
Rnor_6.0 Ensembl	10	49,135,277 - 49,149,479 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000171706 ⟹ ENSRNOP00000106817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	47,898,581 - 47,914,823 (-)	Ensembl

RefSeq Acc Id:

NM_001107008 ⟹ NP_001100478

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	47,896,517 - 47,913,397 (-)	NCBI
mRatBN7.2	10	47,397,285 - 47,414,166 (-)	NCBI
Rnor_6.0	10	49,132,227 - 49,149,479 (-)	NCBI
Rnor_5.0	10	48,913,568 - 48,956,344 (-)	NCBI
RGSC_v3.4	10	48,896,296 - 48,913,856 (-)	RGD
Celera	10	46,642,693 - 46,659,522 (-)	RGD

Sequence:

show sequence

ATGTTAGCCTCAAGAAAGAAGGTGGCAAATTCTTCACGCTCACAAGTCCTTCTAATGTGGAAGC
CAGACAAGATTCAAAACGGACCCTGCAATGCTGAGAAGCAAATCCTCACCTCGAGACTCTTGCG
TGACGCTGAAACCTGTCGACAGAATTTTAGAAATTTTCCATACCCAGATGTGGCAGGTCCTCGG
AAAGCATTGAGCCAGCTCCGAGAGCTCTGCCTGAAGTGGCTGAGACCTGAAGTTCATTCCAAGG
AACAAATTCTGGAGTTGCTGGTGCTGGAGCAGTTTCTAAGCATCTTGCCTGGGGAGGTTAGGAC
TTGGGTAAATTCTCAGTACCCAGAGAACAGCGAGGAAGTGGTGGCTTTGGTGGAGGATCTGGCA
CAGATTCTAGAAGAGGAAGCTCCTCAGAATTCTGCCCTTCCCCAAGAAATCCCAGAGGAAGACC
CCAAACATGCTCTCGAGACAGGGTGGCTCAATGACTTGGTGACCAAAGAATCAGTGACATTCAA
TGACGTGGCTGTGGACATCACCCAAGAGGACTGGGAACTGATGCGCCCTGTTGAGAAGGAACTG
TATAAGACTGTGACGTTACAGAACTATTGGAACATGGTTTCTCTGGGACTGACCGTGTACAGGC
CAACTGTGATTCCCATCTTAGAAGAGCCATGGATGGTGATAAAAGAAATTGTAGAAGGCCCTAG
TCCAGAATGGGAAACTAAAGCTCAAGCATGTAGTCCATTAAAGGATTTTCCTAAACTCAAACAA
GATGGAACCCAAACCATAAAACTGGAAGAATCCTGTGACTGTGAAGACGGCTTAGAGAGGCAGC
CAGCGTATGCCTTCAGGAAGATTCACATAGATGAAGATGACTTCAGTTTGAAGTCAGAGCTTTC
ACAAGAAGACCCTACAGAAGAATGTCTTAGTAAATATGACCTATATAGAGATAATTTTGAAAAG
CACACCAACCTAATTATACAGTTTGATACGCAGTCAGATAGTAAAACTTTACTGTATAATGAGA
GCAAGCCAACATTCACTAATGTCTCATCTGGTGGTGTTGTCCATGGGAAAATACTTCCCGGGGA
TAAGCCTTATTCCTGTAATGTCTGTGGAAAGAAATTTAGAAAATACCCATCACTCCTGGCACAC
CGAAATAACCATGCCAAAGACAAATCTTATGAATGTGAAGAATGTGGTAAAGAATTTAAGCATC
TCTCATCCCTCATTGCACATCAGAGAATGCACACCGGAGAAAAACCATACGAATGCCACCAGTG
TGGGAAAGCCTTCAGTCAGCGTGCACACCTGACGATCCACCAGAGAATTCATACTGGAGAAAAG
CCCTACAAGTGTAACGACTGTGGGAAAGACTTCAGTCAGCGTGCACACCTCACTATCCATCAGA
GGACACACACTGGGGAGAAACCATATAAATGTTTGGAGTGCAGTAAAACCTTTAGCCATAGTTC
ATCCCTGATTAATCATCAGAGAGTTCATACTGGAGAAAAACCGTATATATGCAATGAGTGTGGG
AAGACTTTCAGTCAGAGTACGCACCTCCTCCAACATCAAAAAATTCACACTGGGAAAAAGCCGT
ATAAGTGCAATGAGTGTTGGAAAGTGTTCAGCCAGAGCACTTACCTTATTCGCCATCAGCGAAT
CCATTCTGGAGAGAAGTGTTACAAATGCACTGAATGTGGGAAGGCCTTCGCCCACTCCTCAACC
CTCATCCAACATCAGACCACTCACACTGGAGAGAAATCCTATATCTGCAACGTGTGTGGGAAAG
CCTTCAGCCAAAGCGCTAACCTTACCCAGCATCATAGAACACACACTGGAGAGAAGCCGTACAA
ATGTAGCGTGTGTGGGAAAGCCTTCAGCCAGAGTGTGCACCTCACTCAGCACCAGAGGATTCAC
AATGGAGAAAAGCCCTTCAAATGTAATACCTGCGGGAAAGCATACAGACAAGGTGCCAATCTGA
CCCAGCATCAACGAGTCCACACTGGAGAGAAGCCCTACAAGTGTCACCACTGTGGGAAAGCCTT
TATCTACTCCTCATCACTTAATCAACATCGAAGAACTCATACTGGAGAGAGACCCTATAAGTGC
ACTCACTGTAACAAAGATTTTAGCCAGAGAACATGCCTTATTCAACACCAGAGGATTCACACAG
GAGAAAGGCCCTATGGATGCCGTATATGTGGGAAAAGCTTCACCCAGAGTACAAATCTTATTCA
GCACCAACGGGTTCATATGGGCGCCAGACATCGCAATGGACAGATATGACTTAGTTTATGTTTA
AAACTTGATTGCTTAAATTTCATTGTGTGCTGAGTCAAAATACCCAAAAGAAATCTGAAGAAGT
GCAATATGCTTGATACTACAGGATCAGAAAGTACCAGAATTAGTAAAATTGCTCTCGTCCACTT
AGGTTTAGTGTGAGATTTAAAGCTCCAGAACTTGAATTCATTCCACAAAGAAATACTAGGAAAG
GACAATTTGTAACCTGTGATTCTTCAACTCTTAGTATTTTTCAAGTATGTTTTATTGAGGCCTT
AGGAGTATGACTTGGTCTTTCAAGTGATCTCACACTAGAGAGTAATCCTGACATAGGAAAGAGG
GTAGATGCTTCAAGGCCTTTGCTTCATCCTGGCTTTGAAGCCTCAAAATGAGTAAACTGTCCCA
ATTTTTGTTCCCTCTTTTCCCATTGCAACTTCCATGAGAAGCAGTAAAGCTTGAGGAAAAGAAA
GACCTGAAAAGCTCTTAAAAGATTTCCGTGTGACCACTGCAGTCTGATAAGATAGAGGATCAGT
ATATCCAAAACACTAGACGTGTACAAACTCACGCAGACACAGGTTAAACACCCCAGCCTCAAGT
CATCTTTAGTACAACTTCATTTTCACATCCAGTGTCACCTCGAAGGAAGAAGGACAGGCATGGT
GTTCCCTTTTGTCCCACCTGACTTAAGTTGACAAGTTTCCCATGGTTCTTACTGTACCAAGCTA
TTTCTTCCATTGAAACACACTTCTTGAGAGCCCACTGTGCTCAGAACACAGACTTCTTTTTTAT
TATCGTTTATAGTTTTTTAATGTAGGAGTCTGCATATCAGATCCCTTTATAGATATGGTCACGA
GCCACTATGTTGGTGCTGGGAATTGAACTCAGGACCTCTAGAAAAGCAGCCAGTACTCTTAACC
ACTGAGCCACCTCATCAGCCTGACACAGCCTCCTTGACTGAACCATTTCATTTAACAAAGATCT
TTAAAGAGAAGGTAAGGACACGCTTTAACTATTTTGCCATGGAACAGTGTAACCCACCTAAATG
GGTTGGCAAATGCTACGGTAAGGCCAGGTGTAGAGGGCAGTGAGCATGGGCTGCACAAACAATT
TGAGAATGAATGAGGGATGCAAAGGAGACCTGAGCCAGTGCAGAGGTGGCGAGGGAAAGCCAGG
GCCGGGAGGAGGGAGGAGGGGAGCACACAGATAGCTCATGTGACATGAAATATAATTGTACCCA
CTTTATCCAAGAAACAACTGTGGTGAAAAACAGAAAATTAGACTGTTTATAAGAAGCTAAAAAG
AAAAGTATTTTCAGGAATAATTAGAAACCTGGTACTCCATACATGGAAGTAAAATTTAAAAATT
ACACTTAACATGTTAGGAAAGTGTTTCATTGGAAAAAGCCTTGGTGAAAAAATGATCATTAATC
AGGAATGAAACAGTAACTAAGTTCGTGGGTCATAAACAGCATAAAAGGAAGACAGACAGGAACC
AATTTTTTTAATTGCTGGGGTTTTTTCGCAAACAGTAATTACAAAGTGTAATTACAGTTTAATT
ACTTTACTATTGTATTTACTACCCATAGTGCTGTGCTCTCAGAATATTTAGCTGAGCTTCATCT
TGCCTGTTCTTGTTCCTCCAGTGCCTTGCATAAGATCAATATATGTTGGTTGAATTGACAGCGA
ATTCTATACATTAGAGTCTCGTAGTTAAGGTAGCAACACAGGCATGGAGAGAACATGGGTGGGA
CTGAAGGTAACCTGTGTGTCCATGTATCACGTCTAACAAGCACTGTTTACTGTGAAACGACAGC
TCAAGAAGGAGACTGAGAGGCGGTGGACGCTGTTGCCCGAGGAAAGCTCCCTGAGCTACAGGAG
AGGAAACGAGTTCTGGTACCATAGATACCCAAACACCACAACGGGCTGAAGAAAAGGCCTCATC
TATCCTTGTGGGAGTGTTTTCTTAAGGAAATTGTCACTTTCTCCTTCCTGATATTAGTTATCTT
GACTTCGTAGTGTTCACAAATACTGGTTACAAACATACTCAGATTAGGCTCACTCCACAGTTTT
GTTAAGAATAACAAACGTGTTTGCTAGATGACTTGATATTGCTTCATGCCTTGATAACTAACAC
TTCTTTCCGCTGGGATGAATGTGGTTTGGTACAGGCCAGAGGGTGGTACTTTGTTTCCTACCTG
TGTGCATTTTATGTAAATAATGCATTTATAAAGTCTTCCACTGTACACAGAGTCAAGTACGGCT
CCTAAAAAAAAATAGAATAACAATGCAGAATCCTGTCTCCATGCCTTTCCCCATTTCAAAGTCG
TCTGGTCTACGAGCGAGTCACGGGTCTTTAGCAAATATTTCCTACAGCTTTTTCTAGGAGCATT
GCTAACTATGTGAGTGTTTAAAGTCATCAGATCAACGGTATGCGCCACCTGTATTCTAAAGTTA
ATGTTTGCAATATTGAAAAGTAACCTGAGACACCTCACTCTAAAACATCTCATAAAAATGCCAT
TCCCCTACCATAGTGCCTCAAAGAAAATGGGCAGTCCTTCCTAACATCTAATTACTAGTCCATT
TCCTGATCTCCCTGTTGAGCCAATCAGTGTCTGCGTGTCCTCTGTTTGGTGGGCTTCCTGTGCC
TAGAACAGACCCTCCCATTTTTCTGTTGTTTTCAGGGTGTGCTGGTCGTCACATTCAGGAGTGA
GCTGAGAGTTCATACATGGCTTGCATGTGCTGAAGTAAATGTCCTGAAGCTTCTAGGAAATCGA
AGTTGAGGCCAAAGGCTCAAGTTAAACATCCTTAACCATGGCATTTCACGGTTGCATTTCCTCC
TGCATCCCAGAACTCAGTCAGGCCAACAGGCTGCTGCTGACGTGACATTTGACTGTTGAAGTGG
TGACCACCAGATTGTCCCAGTGCAATTCCTCCTGTTGTGGTTGTCTGTCTGTGGACTGACACTT
GGGCAGTGTGGCTGACTTCTTTACCCACTGTTTTGTGTCTAGTCACATTGTTACCTGACAGCCT
CTTCATTAAAGCCTACAAAACAAGTGA

hide sequence

RefSeq Acc Id:

XM_006246692 ⟹ XP_006246754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	47,896,517 - 47,914,850 (-)	NCBI
mRatBN7.2	10	47,395,650 - 47,415,610 (-)	NCBI
Rnor_6.0	10	49,131,764 - 49,150,930 (-)	NCBI
Rnor_5.0	10	48,913,568 - 48,956,344 (-)	NCBI

Sequence:

show sequence

TCTCCACTAGCACATGCGCAGTGGCGCCGAGGCGAGGTCTCAGCGAAGCCCAGGAGCTGGGGGT
TCCGGCCGGGCCTCTGGGGACCGGGCTGGAAGAAGCGTGTCCTGGAGGCTCTGGGCTCCTCTCA
TGGAGGGAAGCGGTGAAGCTGAGCCCCTTGTGCAGCTCTGAGTCGAATCTGCCACGGAGGCGCC
CGACACGCCGCCGCCATTGTTGCCCGGGCTGCGCCGACGGGGCCCGAGGGACAGGGTCCCGCTC
ATCCTTGCAGGTTCCGGACTCAGAATTTGTTACGAGGTACTAACTTTGTCGTGATTCCATTCTC
GACCTGGCCACAGCAGCCCTTGGGGAAAAAATTGTCGTGACTGTCACATGAGACTTCAAGAAGT
TGGCTCAGTACTGTCAGATTGGTTCTCCTGTCTGCAGCAATGTTAGCCTCAAGAAAGAAGGTGG
CAAATTCTTCACGCTCACAAGTCCTTCTAATGTGGAAGCCAGACAAGATTCAAAACGGACCCTG
CAATGCTGAGAAGCAAATCCTCACCTCGAGACTCTTGCGTGACGCTGAAACCTGTCGACAGAAT
TTTAGAAATTTTCCATACCCAGATGTGGCAGGTCCTCGGAAAGCATTGAGCCAGCTCCGAGAGC
TCTGCCTGAAGTGGCTGAGACCTGAAGTTCATTCCAAGGAACAAATTCTGGAGTTGCTGGTGCT
GGAGCAGTTTCTAAGCATCTTGCCTGGGGAGGTTAGGACTTGGGTAAATTCTCAGTACCCAGAG
AACAGCGAGGAAGTGGTGGCTTTGGTGGAGGATCTGGCACAGATTCTAGAAGAGGAAGCTCCTC
AGAATTCTGCCCTTCCCCAAGAAATCCCAGAGGAAGACCCCAAACATGCTCTCGAGACAGGGTG
GCTCAATGACTTGGTGACCAAAGAATCAGTGACATTCAATGACGTGGCTGTGGACATCACCCAA
GAGGACTGGGAACTGATGCGCCCTGTTGAGAAGGAACTGTATAAGACTGTGACGTTACAGAACT
ATTGGAACATGGTTTCTCTGGGACTGACCGTGTACAGGCCAACTGTGATTCCCATCTTAGAAGA
GCCATGGATGGTGATAAAAGAAATTGTAGAAGGCCCTAGTCCAGAATGGGAAACTAAAGCTCAA
GCATGTAGTCCATTAAAGGATTTTCCTAAACTCAAACAAGATGGAACCCAAACCATAAAACTGG
AAGAATCCTGTGACTGTGAAGACGGCTTAGAGAGGCAGCCAGCGTATGCCTTCAGGAAGATTCA
CATAGATGAAGATGACTTCAGTTTGAAGTCAGAGCTTTCACAAGAAGACCCTACAGAAGAATGT
CTTAGTAAATATGACCTATATAGAGATAATTTTGAAAAGCACACCAACCTAATTATACAGTTTG
ATACGCAGTCAGATAGTAAAACTTTACTGTATAATGAGAGCAAGCCAACATTCACTAATGTCTC
ATCTGGTGGTGTTGTCCATGGGAAAATACTTCCCGGGGATAAGCCTTATTCCTGTAATGTCTGT
GGAAAGAAATTTAGAAAATACCCATCACTCCTGGCACACCGAAATAACCATGCCAAAGACAAAT
CTTATGAATGTGAAGAATGTGGTAAAGAATTTAAGCATCTCTCATCCCTCATTGCACATCAGAG
AATGCACACCGGAGAAAAACCATACGAATGCCACCAGTGTGGGAAAGCCTTCAGTCAGCGTGCA
CACCTGACGATCCACCAGAGAATTCATACTGGAGAAAAGCCCTACAAGTGTAACGACTGTGGGA
AAGACTTCAGTCAGCGTGCACACCTCACTATCCATCAGAGGACACACACTGGGGAGAAACCATA
TAAATGTTTGGAGTGCAGTAAAACCTTTAGCCATAGTTCATCCCTGATTAATCATCAGAGAGTT
CATACTGGAGAAAAACCGTATATATGCAATGAGTGTGGGAAGACTTTCAGTCAGAGTACGCACC
TCCTCCAACATCAAAAAATTCACACTGGGAAAAAGCCGTATAAGTGCAATGAGTGTTGGAAAGT
GTTCAGCCAGAGCACTTACCTTATTCGCCATCAGCGAATCCATTCTGGAGAGAAGTGTTACAAA
TGCACTGAATGTGGGAAGGCCTTCGCCCACTCCTCAACCCTCATCCAACATCAGACCACTCACA
CTGGAGAGAAATCCTATATCTGCAACGTGTGTGGGAAAGCCTTCAGCCAAAGCGCTAACCTTAC
CCAGCATCATAGAACACACACTGGAGAGAAGCCGTACAAATGTAGCGTGTGTGGGAAAGCCTTC
AGCCAGAGTGTGCACCTCACTCAGCACCAGAGGATTCACAATGGAGAAAAGCCCTTCAAATGTA
ATACCTGCGGGAAAGCATACAGACAAGGTGCCAATCTGACCCAGCATCAACGAGTCCACACTGG
AGAGAAGCCCTACAAGTGTCACCACTGTGGGAAAGCCTTTATCTACTCCTCATCACTTAATCAA
CATCGAAGAACTCATACTGGAGAGAGACCCTATAAGTGCACTCACTGTAACAAAGATTTTAGCC
AGAGAACATGCCTTATTCAACACCAGAGGATTCACACAGGAGAAAGGCCCTATGGATGCCGTAT
ATGTGGGAAAAGCTTCACCCAGAGTACAAATCTTATTCAGCACCAACGGGTTCATATGGGCGCC
AGACATCGCAATGGACAGATATGACTTAGTTTATGTTTAAAACTTGATTGCTTAAATTTCATTG
TGTGCTGAGTCAAAATACCCAAAAGAAATCTGAAGAAGTGCAATATGCTTGATACTACAGGATC
AGAAAGTACCAGAATTAGTAAAATTGCTCTCGTCCACTTAGGTTTAGTGTGAGATTTAAAGCTC
CAGAACTTGAATTCATTCCACAAAGAAATACTAGGAAAGGACAATTTGTAACCTGTGATTCTTC
AACTCTTAGTATTTTTCAAGTATGTTTTATTGAGGCCTTAGGAGTATGACTTGGTCTTTCAAGT
GATCTCACACTAGAGAGTAATCCTGACATAGGAAAGAGGGTAGATGCTTCAAGGCCTTTGCTTC
ATCCTGGCTTTGAAGCCTCAAAATGAGTAAACTGTCCCAATTTTTGTTCCCTCTTTTCCCATTG
CAACTTCCATGAGAAGCAGTAAAGCTTGAGGAAAAGAAAGACCTGAAAAGCTCTTAAAAGATTT
CCGTGTGACCACTGCAGTCTGATAAGATAGAGGATCAGTATATCCAAAACACTAGACGTGTACA
AACTCACGCAGACACAGGTTAAACACCCCAGCCTCAAGTCATCTTTAGTACAACTTCATTTTCA
CATCCAGTGTCACCTCGAAGGAAGAAGGACAGGCATGGTGTTCCCTTTTGTCCCACCTGACTTA
AGTTGACAAGTTTCCCATGGTTCTTACTGTACCAAGCTATTTCTTCCATTGAAACACACTTCTT
GAGAGCCCACTGTGCTCAGAACACAGACTTCTTTTTTATTATCGTTTATAGTTTTTTAATGTAG
GAGTCTGCATATCAGATCCCTTTATAGATATGGTCACGAGCCACTATGTTGGTGCTGGGAATTG
AACTCAGGACCTCTAGAAAAGCAGCCAGTACTCTTAACCACTGAGCCACCTCATCAGCCTGACA
CAGCCTCCTTGACTGAACCATTTCATTTAACAAAGATCTTTAAAGAGAAGGTAAGGACACGCTT
TAACTATTTTGCCATGGAACAGTGTAACCCACCTAAATGGGTTGGCAAATGCTACGGTAAGGCC
AGGTGTAGAGGGCAGTGAGCATGGGCTGCACAAACAATTTGAGAATGAATGAGGGATGCAAAGG
AGACCTGAGCCAGTGCAGAGGTGGCGAGGGAAAGCCAGGGCCGGGAGGAGGGAGGAGGGGAGCA
CACAGATAGCTCATGTGACATGAAATATAATTGTACCCACTTTATCCAAGAAACAACTGTGGTG
AAAAACAGAAAATTAGACTGTTTATAAGAAGCTAAAAAGAAAAGTATTTTCAGGAATAATTAGA
AACCTGGTACTCCATACATGGAAGTAAAATTTAAAAATTACACTTAACATGTTAGGAAAGTGTT
TCATTGGAAAAAGCCTTGGTGAAAAAATGATCATTAATCAGGAATGAAACAGTAACTAAGTTCG
TGGGTCATAAACAGCATAAAAGGAAGACAGACAGGAACCAATTTTTTTAATTGCTGGGGTTTTT
TCGCAAACAGTAATTACAAAGTGTAATTACAGTTTAATTACTTTACTATTGTATTTACTACCCA
TAGTGCTGTGCTCTCAGAATATTTAGCTGAGCTTCATCTTGCCTGTTCTTGTTCCTCCAGTGCC
TTGCATAAGATCAATATATGTTGGTTGAATTGACAGCGAATTCTATACATTAGAGTCTCGTAGT
TAAGGTAGCAACACAGGCATGGAGAGAACATGGGTGGGACTGAAGGTAACCTGTGTGTCCATGT
ATCACGTCTAACAAGCACTGTTTACTGTGAAACGACAGCTCAAGAAGGAGACTGAGAGGCGGTG
GACGCTGTTGCCCGAGGAAAGCTCCCTGAGCTACAGGAGAGGAAACGAGTTCTGGTACCATAGA
TACCCAAACACCACAACGGGCTGAAGAAAAGGCCTCATCTATCCTTGTGGGAGTGTTTTCTTAA
GGAAATTGTCACTTTCTCCTTCCTGATATTAGTTATCTTGACTTCGTAGTGTTCACAAATACTG
GTTACAAACATACTCAGATTAGGCTCACTCCACAGTTTTGTTAAGAATAACAAACGTGTTTGCT
AGATGACTTGATATTGCTTCATGCCTTGATAACTAACACTTCTTTCCGCTGGGATGAATGTGGT
TTGGTACAGGCCAGAGGGTGGTACTTTGTTTCCTACCTGTGTGCATTTTATGTAAATAATGCAT
TTATAAAGTCTTCCACTGTACACAGAGTCAAGTACGGCTCCTAAAAAAAAATAGAATAACAATG
CAGAATCCTGTCTCCATGCCTTTCCCCATTTCAAAGTCGTCTGGTCTACGAGCGAGTCACGGGT
CTTTAGCAAATATTTCCTACAGCTTTTTCTAGGAGCATTGCTAACTATGTGAGTGTTTAAAGTC
ATCAGATCAACGGTATGCGCCACCTGTATTCTAAAGTTAATGTTTGCAATATTGAAAAGTAACC
TGAGACACCTCACTCTAAAACATCTCATAAAAATGCCATTCCCCTACCATAGTGCCTCAAAGAA
AATGGGCAGTCCTTCCTAACATCTAATTACTAGTCCATTTCCTGATCTCCCTGTTGAGCCAATC
AGTGTCTGCGTGTCCTCTGTTTGGTGGGCTTCCTGTGCCTAGAACAGACCCTCCCATTTTTCTG
TTGTTTTCAGGGTGTGCTGGTCGTCACATTCAGGAGTGAGCTGAGAGTTCATACATGGCTTGCA
TGTGCTGAAGTAAATGTCCTGAAGCTTCTAGGAAATCGAAGTTGAGGCCAAAGGCTCAAGTTAA
ACATCCTTAACCATGGCATTTCACGGTTGCATTTCCTCCTGCATCCCAGAACTCAGTCAGGCCA
ACAGGCTGCTGCTGACGTGACATTTGACTGTTGAAGTGGTGACCACCAGATTGTCCCAGTGCAA
TTCCTCCTGTTGTGGTTGTCTGTCTGTGGACTGACACTTGGGCAGTGTGGCTGACTTCTTTACC
CACTGTTTTGTGTCTAGTCACATTGTTACCTGACAGCCTCTTCATTAAAGCCTACAAAACAAGT
GATTTTTCTACTCCTCAGACATTTGCTGAGCAGTATTCTGTAAGGGAGATGTCCCTTCATTAGC
TGGGAATGCATTAGAAGCAAGCTTGTGCTTAGCTCCTTTCCACTAACTAACCGGTTTAGACGTT
GTCTGTGTAATCTACTGTGAGTCTGTGCATTAGTCCCTTACAACCACCATCTCTGTGAACCCTC
CTGGCCTTGCATTCCCAGTCTCTGGGCGATTTCTCGCCTTCTCCCACATGGTACCTCAAGCTCA
TCCTACACTTGCATTGCCCTAAACTCAGATGGAAACAGCTCTTCTCAAACTCCCTCCCCCCTCT
TTTTTTCTTTTCTTTTTTTCGGAGCTGAGGACTGAACTCAGGGCTGGCCCCTTTTTATAAGCAG
CTATGTAGAAACAAGATCTGGGCACTAACACACACTCCATGCAACTGGAGTGGCATTAACAAGC
GTTTCCAACCAACTTTA

hide sequence

RefSeq Acc Id:

XM_017597279 ⟹ XP_017452768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	47,896,517 - 47,913,133 (-)	NCBI
mRatBN7.2	10	47,395,650 - 47,413,902 (-)	NCBI
Rnor_6.0	10	49,131,764 - 49,149,164 (-)	NCBI

Sequence:

show sequence

AGGACTTGGGTAAATTCTCAGTACCCAGAGAACAGCGAGGAAGTGGTGGCTTTGGTGGAGGATC
TGGCACAGATTCTAGAAGAGGAAGGAATCAGTGACATTCAATGACGTGGCTGTGGACATCACCC
AAGAGGACTGGGAACTGATGCGCCCTGTTGAGAAGGAACTGTATAAGACTGTGACGTTACAGAA
CTATTGGAACATGGTTTCTCTGGGACTGACCGTGTACAGGCCAACTGTGATTCCCATCTTAGAA
GAGCCATGGATGGTGATAAAAGAAATTGTAGAAGGCCCTAGTCCAGAATGGGAAACTAAAGCTC
AAGCATGTAGTCCATTAAAGGATTTTCCTAAACTCAAACAAGATGGAACCCAAACCATAAAACT
GGAAGAATCCTGTGACTGTGAAGACGGCTTAGAGAGGCAGCCAGCGTATGCCTTCAGGAAGATT
CACATAGATGAAGATGACTTCAGTTTGAAGTCAGAGCTTTCACAAGAAGACCCTACAGAAGAAT
GTCTTAGTAAATATGACCTATATAGAGATAATTTTGAAAAGCACACCAACCTAATTATACAGTT
TGATACGCAGTCAGATAGTAAAACTTTACTGTATAATGAGAGCAAGCCAACATTCACTAATGTC
TCATCTGGTGGTGTTGTCCATGGGAAAATACTTCCCGGGGATAAGCCTTATTCCTGTAATGTCT
GTGGAAAGAAATTTAGAAAATACCCATCACTCCTGGCACACCGAAATAACCATGCCAAAGACAA
ATCTTATGAATGTGAAGAATGTGGTAAAGAATTTAAGCATCTCTCATCCCTCATTGCACATCAG
AGAATGCACACCGGAGAAAAACCATACGAATGCCACCAGTGTGGGAAAGCCTTCAGTCAGCGTG
CACACCTGACGATCCACCAGAGAATTCATACTGGAGAAAAGCCCTACAAGTGTAACGACTGTGG
GAAAGACTTCAGTCAGCGTGCACACCTCACTATCCATCAGAGGACACACACTGGGGAGAAACCA
TATAAATGTTTGGAGTGCAGTAAAACCTTTAGCCATAGTTCATCCCTGATTAATCATCAGAGAG
TTCATACTGGAGAAAAACCGTATATATGCAATGAGTGTGGGAAGACTTTCAGTCAGAGTACGCA
CCTCCTCCAACATCAAAAAATTCACACTGGGAAAAAGCCGTATAAGTGCAATGAGTGTTGGAAA
GTGTTCAGCCAGAGCACTTACCTTATTCGCCATCAGCGAATCCATTCTGGAGAGAAGTGTTACA
AATGCACTGAATGTGGGAAGGCCTTCGCCCACTCCTCAACCCTCATCCAACATCAGACCACTCA
CACTGGAGAGAAATCCTATATCTGCAACGTGTGTGGGAAAGCCTTCAGCCAAAGCGCTAACCTT
ACCCAGCATCATAGAACACACACTGGAGAGAAGCCGTACAAATGTAGCGTGTGTGGGAAAGCCT
TCAGCCAGAGTGTGCACCTCACTCAGCACCAGAGGATTCACAATGGAGAAAAGCCCTTCAAATG
TAATACCTGCGGGAAAGCATACAGACAAGGTGCCAATCTGACCCAGCATCAACGAGTCCACACT
GGAGAGAAGCCCTACAAGTGTCACCACTGTGGGAAAGCCTTTATCTACTCCTCATCACTTAATC
AACATCGAAGAACTCATACTGGAGAGAGACCCTATAAGTGCACTCACTGTAACAAAGATTTTAG
CCAGAGAACATGCCTTATTCAACACCAGAGGATTCACACAGGAGAAAGGCCCTATGGATGCCGT
ATATGTGGGAAAAGCTTCACCCAGAGTACAAATCTTATTCAGCACCAACGGGTTCATATGGGCG
CCAGACATCGCAATGGACAGATATGACTTAGTTTATGTTTAAAACTTGATTGCTTAAATTTCAT
TGTGTGCTGAGTCAAAATACCCAAAAGAAATCTGAAGAAGTGCAATATGCTTGATACTACAGGA
TCAGAAAGTACCAGAATTAGTAAAATTGCTCTCGTCCACTTAGGTTTAGTGTGAGATTTAAAGC
TCCAGAACTTGAATTCATTCCACAAAGAAATACTAGGAAAGGACAATTTGTAACCTGTGATTCT
TCAACTCTTAGTATTTTTCAAGTATGTTTTATTGAGGCCTTAGGAGTATGACTTGGTCTTTCAA
GTGATCTCACACTAGAGAGTAATCCTGACATAGGAAAGAGGGTAGATGCTTCAAGGCCTTTGCT
TCATCCTGGCTTTGAAGCCTCAAAATGAGTAAACTGTCCCAATTTTTGTTCCCTCTTTTCCCAT
TGCAACTTCCATGAGAAGCAGTAAAGCTTGAGGAAAAGAAAGACCTGAAAAGCTCTTAAAAGAT
TTCCGTGTGACCACTGCAGTCTGATAAGATAGAGGATCAGTATATCCAAAACACTAGACGTGTA
CAAACTCACGCAGACACAGGTTAAACACCCCAGCCTCAAGTCATCTTTAGTACAACTTCATTTT
CACATCCAGTGTCACCTCGAAGGAAGAAGGACAGGCATGGTGTTCCCTTTTGTCCCACCTGACT
TAAGTTGACAAGTTTCCCATGGTTCTTACTGTACCAAGCTATTTCTTCCATTGAAACACACTTC
TTGAGAGCCCACTGTGCTCAGAACACAGACTTCTTTTTTATTATCGTTTATAGTTTTTTAATGT
AGGAGTCTGCATATCAGATCCCTTTATAGATATGGTCACGAGCCACTATGTTGGTGCTGGGAAT
TGAACTCAGGACCTCTAGAAAAGCAGCCAGTACTCTTAACCACTGAGCCACCTCATCAGCCTGA
CACAGCCTCCTTGACTGAACCATTTCATTTAACAAAGATCTTTAAAGAGAAGGTAAGGACACGC
TTTAACTATTTTGCCATGGAACAGTGTAACCCACCTAAATGGGTTGGCAAATGCTACGGTAAGG
CCAGGTGTAGAGGGCAGTGAGCATGGGCTGCACAAACAATTTGAGAATGAATGAGGGATGCAAA
GGAGACCTGAGCCAGTGCAGAGGTGGCGAGGGAAAGCCAGGGCCGGGAGGAGGGAGGAGGGGAG
CACACAGATAGCTCATGTGACATGAAATATAATTGTACCCACTTTATCCAAGAAACAACTGTGG
TGAAAAACAGAAAATTAGACTGTTTATAAGAAGCTAAAAAGAAAAGTATTTTCAGGAATAATTA
GAAACCTGGTACTCCATACATGGAAGTAAAATTTAAAAATTACACTTAACATGTTAGGAAAGTG
TTTCATTGGAAAAAGCCTTGGTGAAAAAATGATCATTAATCAGGAATGAAACAGTAACTAAGTT
CGTGGGTCATAAACAGCATAAAAGGAAGACAGACAGGAACCAATTTTTTTAATTGCTGGGGTTT
TTTCGCAAACAGTAATTACAAAGTGTAATTACAGTTTAATTACTTTACTATTGTATTTACTACC
CATAGTGCTGTGCTCTCAGAATATTTAGCTGAGCTTCATCTTGCCTGTTCTTGTTCCTCCAGTG
CCTTGCATAAGATCAATATATGTTGGTTGAATTGACAGCGAATTCTATACATTAGAGTCTCGTA
GTTAAGGTAGCAACACAGGCATGGAGAGAACATGGGTGGGACTGAAGGTAACCTGTGTGTCCAT
GTATCACGTCTAACAAGCACTGTTTACTGTGAAACGACAGCTCAAGAAGGAGACTGAGAGGCGG
TGGACGCTGTTGCCCGAGGAAAGCTCCCTGAGCTACAGGAGAGGAAACGAGTTCTGGTACCATA
GATACCCAAACACCACAACGGGCTGAAGAAAAGGCCTCATCTATCCTTGTGGGAGTGTTTTCTT
AAGGAAATTGTCACTTTCTCCTTCCTGATATTAGTTATCTTGACTTCGTAGTGTTCACAAATAC
TGGTTACAAACATACTCAGATTAGGCTCACTCCACAGTTTTGTTAAGAATAACAAACGTGTTTG
CTAGATGACTTGATATTGCTTCATGCCTTGATAACTAACACTTCTTTCCGCTGGGATGAATGTG
GTTTGGTACAGGCCAGAGGGTGGTACTTTGTTTCCTACCTGTGTGCATTTTATGTAAATAATGC
ATTTATAAAGTCTTCCACTGTACACAGAGTCAAGTACGGCTCCTAAAAAAAAATAGAATAACAA
TGCAGAATCCTGTCTCCATGCCTTTCCCCATTTCAAAGTCGTCTGGTCTACGAGCGAGTCACGG
GTCTTTAGCAAATATTTCCTACAGCTTTTTCTAGGAGCATTGCTAACTATGTGAGTGTTTAAAG
TCATCAGATCAACGGTATGCGCCACCTGTATTCTAAAGTTAATGTTTGCAATATTGAAAAGTAA
CCTGAGACACCTCACTCTAAAACATCTCATAAAAATGCCATTCCCCTACCATAGTGCCTCAAAG
AAAATGGGCAGTCCTTCCTAACATCTAATTACTAGTCCATTTCCTGATCTCCCTGTTGAGCCAA
TCAGTGTCTGCGTGTCCTCTGTTTGGTGGGCTTCCTGTGCCTAGAACAGACCCTCCCATTTTTC
TGTTGTTTTCAGGGTGTGCTGGTCGTCACATTCAGGAGTGAGCTGAGAGTTCATACATGGCTTG
CATGTGCTGAAGTAAATGTCCTGAAGCTTCTAGGAAATCGAAGTTGAGGCCAAAGGCTCAAGTT
AAACATCCTTAACCATGGCATTTCACGGTTGCATTTCCTCCTGCATCCCAGAACTCAGTCAGGC
CAACAGGCTGCTGCTGACGTGACATTTGACTGTTGAAGTGGTGACCACCAGATTGTCCCAGTGC
AATTCCTCCTGTTGTGGTTGTCTGTCTGTGGACTGACACTTGGGCAGTGTGGCTGACTTCTTTA
CCCACTGTTTTGTGTCTAGTCACATTGTTACCTGACAGCCTCTTCATTAAAGCCTACAAAACAA
GTGATTTTTCTACTCCTCAGACATTTGCTGAGCAGTATTCTGTAAGGGAGATGTCCCTTCATTA
GCTGGGAATGCATTAGAAGCAAGCTTGTGCTTAGCTCCTTTCCACTAACTAACCGGTTTAGACG
TTGTCTGTGTAATCTACTGTGAGTCTGTGCATTAGTCCCTTACAACCACCATCTCTGTGAACCC
TCCTGGCCTTGCATTCCCAGTCTCTGGGCGATTTCTCGCCTTCTCCCACATGGTACCTCAAGCT
CATCCTACACTTGCATTGCCCTAAACTCAGATGGAAACAGCTCTTCTCAAACTCCCTCCCCCCT
CTTTTTTTCTTTTCTTTTTTTCGGAGCTGAGGACTGAACTCAGGGCTGGCCCCTTTTTATAAGC
AGCTATGTAGAAACAAGATCTGGGCACTAACACACACTCCATGCAACTGGAGTGGCATTAACAA
GCGTTTCCAACCAACTTTA

hide sequence

RefSeq Acc Id:

XM_039085973 ⟹ XP_038941901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	47,908,525 - 47,914,860 (-)	NCBI
mRatBN7.2	10	47,409,029 - 47,415,610 (-)	NCBI

RefSeq Acc Id:

XR_005489814

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	47,896,517 - 47,914,841 (-)	NCBI
mRatBN7.2	10	47,395,650 - 47,415,610 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100478	(Get FASTA)	NCBI Sequence Viewer
	XP_006246754	(Get FASTA)	NCBI Sequence Viewer
	XP_017452768	(Get FASTA)	NCBI Sequence Viewer
	XP_038941901	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04724	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004291
	ENSRNOP00000004291.4
	ENSRNOP00000106817.1

RefSeq Acc Id:

NP_001100478 ⟸ NM_001107008

- UniProtKB:

D4A516 (UniProtKB/TrEMBL), A6HFB9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLASRKKVANSSRSQVLLMWKPDKIQNGPCNAEKQILTSRLLRDAETCRQNFRNFPYPDVAGPR
KALSQLRELCLKWLRPEVHSKEQILELLVLEQFLSILPGEVRTWVNSQYPENSEEVVALVEDLA
QILEEEAPQNSALPQEIPEEDPKHALETGWLNDLVTKESVTFNDVAVDITQEDWELMRPVEKEL
YKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEIVEGPSPEWETKAQACSPLKDFPKLKQ
DGTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECLSKYDLYRDNFEK
HTNLIIQFDTQSDSKTLLYNESKPTFTNVSSGGVVHGKILPGDKPYSCNVCGKKFRKYPSLLAH
RNNHAKDKSYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEK
PYKCNDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVHTGEKPYICNECG
KTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCTECGKAFAHSST
LIQHQTTHTGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIH
NGEKPFKCNTCGKAYRQGANLTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQHRRTHTGERPYKC
THCNKDFSQRTCLIQHQRIHTGERPYGCRICGKSFTQSTNLIQHQRVHMGARHRNGQI

hide sequence

RefSeq Acc Id:	XP_006246754 ⟸ XM_006246692
- Peptide Label:	isoform X1
- UniProtKB:	D4A516 (UniProtKB/TrEMBL), A6HFB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLASRKKVANSSRSQVLLMWKPDKIQNGPCNAEKQILTSRLLRDAETCRQNFRNFPYPDVAGPR KALSQLRELCLKWLRPEVHSKEQILELLVLEQFLSILPGEVRTWVNSQYPENSEEVVALVEDLA QILEEEAPQNSALPQEIPEEDPKHALETGWLNDLVTKESVTFNDVAVDITQEDWELMRPVEKEL YKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEIVEGPSPEWETKAQACSPLKDFPKLKQ DGTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECLSKYDLYRDNFEK HTNLIIQFDTQSDSKTLLYNESKPTFTNVSSGGVVHGKILPGDKPYSCNVCGKKFRKYPSLLAH RNNHAKDKSYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEK PYKCNDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVHTGEKPYICNECG KTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCTECGKAFAHSST LIQHQTTHTGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIH NGEKPFKCNTCGKAYRQGANLTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQHRRTHTGERPYKC THCNKDFSQRTCLIQHQRIHTGERPYGCRICGKSFTQSTNLIQHQRVHMGARHRNGQI hide sequence

RefSeq Acc Id:

XP_017452768 ⟸ XM_017597279

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRPVEKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEIVEGPSPEWETKAQACSPL
KDFPKLKQDGTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECLSKYD
LYRDNFEKHTNLIIQFDTQSDSKTLLYNESKPTFTNVSSGGVVHGKILPGDKPYSCNVCGKKFR
KYPSLLAHRNNHAKDKSYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIH
QRIHTGEKPYKCNDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVHTGEK
PYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCTECG
KAFAHSSTLIQHQTTHTGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVH
LTQHQRIHNGEKPFKCNTCGKAYRQGANLTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQHRRTH
TGERPYKCTHCNKDFSQRTCLIQHQRIHTGERPYGCRICGKSFTQSTNLIQHQRVHMGARHRNG
QI

hide sequence

Ensembl Acc Id:

ENSRNOP00000004291 ⟸ ENSRNOT00000004291

RefSeq Acc Id:	XP_038941901 ⟸ XM_039085973
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000106817 ⟸ ENSRNOT00000171706

Protein Domains

C2H2-type KRAB SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A516-F1-model_v2	AlphaFold	D4A516	1-762	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308617	AgrOrtholog
BioCyc Gene	G2FUF-24757	BioCyc
Ensembl Genes	ENSRNOG00000003215	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004291	ENTREZGENE
	ENSRNOT00000004291.7	UniProtKB/TrEMBL
	ENSRNOT00000171706.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_domain	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:303212	UniProtKB/TrEMBL
NCBI Gene	303212	ENTREZGENE
PANTHER	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	UniProtKB/TrEMBL
	GENE, 19965-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp287	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003215	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0ABK0L8Y8_RAT	UniProtKB/TrEMBL
	A6HFB9	ENTREZGENE, UniProtKB/TrEMBL
	D4A516	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp287	zinc finger protein 287	Znf287	zinc finger protein 287	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Znf287	zinc finger protein 287	Zfp287	zinc finger protein 287	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Zfp287	zinc finger protein 287	Zfp287_predicted	zinc finger protein 287 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp287_predicted	zinc finger protein 287 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar